Wall clock time and date at job start Mon Mar 30 2020 06:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00543 * 2 1 4 4 H 1.09002 * 109.46772 * 29.99427 * 3 2 1 5 5 C 1.52994 * 109.47367 * 149.99808 * 3 2 1 6 6 C 1.50699 * 109.46621 * 270.00144 * 3 2 1 7 7 C 1.39015 * 126.77391 * 315.01990 * 6 3 2 8 8 C 1.41489 * 126.02087 * 0.02562 * 7 6 3 9 9 H 1.08001 * 120.00051 * 353.82572 * 8 7 6 10 10 C 1.39734 * 120.00161 * 173.82341 * 8 7 6 11 11 N 1.30981 * 120.00149 * 5.87804 * 10 8 7 12 12 Si 1.86805 * 119.99985 * 185.87585 * 10 8 7 13 13 H 1.48501 * 109.47100 * 94.98637 * 12 10 8 14 14 H 1.48502 * 109.46873 * 214.98310 * 12 10 8 15 15 H 1.48497 * 109.47028 * 334.98152 * 12 10 8 16 16 N 1.34847 * 107.95779 * 179.97438 * 7 6 3 17 17 N 1.28663 * 109.63666 * 0.02562 * 16 7 6 18 18 N 1.35024 * 126.77161 * 134.70849 * 6 3 2 19 19 C 1.46500 * 126.49298 * 359.97438 * 18 6 3 20 20 H 1.09000 * 109.46692 * 0.02562 * 19 18 6 21 21 C 1.53005 * 109.47144 * 119.99633 * 19 18 6 22 22 C 1.52992 * 109.47209 * 240.00033 * 19 18 6 23 23 C 1.52995 * 109.47290 * 59.99705 * 22 19 18 24 24 C 1.52998 * 109.47363 * 180.02562 * 22 19 18 25 25 H 1.08995 * 109.46992 * 59.99828 * 1 2 3 26 26 H 1.09005 * 109.46904 * 300.00252 * 1 2 3 27 27 H 1.08997 * 109.47395 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47123 * 60.00455 * 5 3 2 29 29 H 1.09001 * 109.46749 * 179.97438 * 5 3 2 30 30 H 1.08997 * 109.47254 * 299.99983 * 5 3 2 31 31 H 0.97006 * 120.00735 * 179.97438 * 11 10 8 32 32 H 1.09004 * 109.46709 * 60.00188 * 21 19 18 33 33 H 1.09001 * 109.47277 * 179.97438 * 21 19 18 34 34 H 1.08997 * 109.47193 * 300.00306 * 21 19 18 35 35 H 1.09000 * 109.47373 * 299.99680 * 22 19 18 36 36 H 1.09007 * 109.47200 * 60.00323 * 23 22 19 37 37 H 1.09003 * 109.47512 * 179.97438 * 23 22 19 38 38 H 1.09001 * 109.47368 * 300.00450 * 23 22 19 39 39 H 1.09004 * 109.47069 * 300.00103 * 24 22 19 40 40 H 1.09008 * 109.47282 * 59.99756 * 24 22 19 41 41 H 1.08997 * 109.47479 * 179.97438 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 3.3589 1.2631 0.7212 6 6 2.2146 1.7641 -1.4208 7 6 2.7443 1.0189 -2.4680 8 6 3.1931 -0.3208 -2.3922 9 1 3.2331 -0.8236 -1.4372 10 6 3.5846 -0.9932 -3.5528 11 7 3.6463 -0.3510 -4.6926 12 14 4.0201 -2.8083 -3.4787 13 1 2.8280 -3.6184 -3.8364 14 1 5.1180 -3.0934 -4.4372 15 1 4.4607 -3.1559 -2.1039 16 7 2.7540 1.7973 -3.5691 17 7 2.2750 2.9567 -3.2831 18 7 1.9138 2.9783 -1.9293 19 6 1.3239 4.1054 -1.2028 20 1 1.1567 3.8204 -0.1641 21 6 2.2768 5.3013 -1.2559 22 6 -0.0096 4.4867 -1.8486 23 6 -0.9624 3.2908 -1.7955 24 6 -0.6254 5.6642 -1.0903 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 4.0242 0.5692 0.2074 29 1 3.8025 2.2588 0.7208 30 1 3.2111 0.9312 1.7489 31 1 3.9185 -0.8176 -5.4983 32 1 2.4445 5.5863 -2.2946 33 1 1.8377 6.1401 -0.7157 34 1 3.2268 5.0296 -0.7958 35 1 0.1581 4.7717 -2.8873 36 1 -1.1301 3.0057 -0.7568 37 1 -1.9126 3.5626 -2.2553 38 1 -0.5235 2.4522 -2.3361 39 1 -0.7930 5.3796 -0.0515 40 1 0.0536 6.5161 -1.1285 41 1 -1.5752 5.9361 -1.5507 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:38 Heat of formation + Delta-G solvation = 7.952395 kcal Electronic energy + Delta-G solvation = -22040.261441 eV Core-core repulsion = 18956.195354 eV Total energy + Delta-G solvation = -3084.066087 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.98788 -38.75719 -38.25404 -35.19498 -33.85102 -32.71472 -30.75701 -30.33310 -27.95298 -27.22750 -26.86884 -25.01812 -24.10870 -22.64494 -21.04347 -20.43946 -18.73039 -17.57670 -17.38408 -16.59192 -16.38103 -15.90894 -15.64930 -15.50118 -14.92517 -14.76561 -14.21575 -14.14211 -13.59138 -13.41482 -13.24630 -13.13963 -13.04447 -12.89737 -12.83044 -12.73493 -12.64590 -12.31265 -12.10685 -12.00636 -11.91137 -11.74339 -11.55752 -11.48145 -11.08561 -10.78325 -10.43385 -10.17468 -9.29171 -8.25815 -6.08623 1.03484 1.42748 1.44046 1.57581 1.99366 2.36252 2.39348 3.05986 3.51768 3.60800 3.80542 3.90307 4.02192 4.09534 4.22168 4.36210 4.44411 4.49947 4.54257 4.66502 4.71350 4.74170 4.76979 4.83917 4.87581 4.92676 4.96846 4.99560 5.11196 5.15823 5.20969 5.25886 5.34946 5.41326 5.44601 5.60271 5.64025 6.42318 6.55106 6.59154 6.98156 7.18953 8.37427 8.73978 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.021253 B = 0.007136 C = 0.006371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.161648 B = 3922.967733 C = 4393.663459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.190 3.810 4 H 0.078 0.922 5 C -0.135 4.135 6 C -0.117 4.117 7 C 0.127 3.873 8 C -0.457 4.457 9 H 0.089 0.911 10 C 0.018 3.982 11 N -0.830 5.830 12 Si 0.978 3.022 13 H -0.271 1.271 14 H -0.278 1.278 15 H -0.253 1.253 16 N -0.292 5.292 17 N -0.159 5.159 18 N -0.342 5.342 19 C 0.149 3.851 20 H 0.112 0.888 21 C -0.153 4.153 22 C -0.098 4.098 23 C -0.139 4.139 24 C -0.136 4.136 25 H 0.017 0.983 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.269 0.731 32 H 0.047 0.953 33 H 0.113 0.887 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.011 0.989 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.080 7.813 13.705 17.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.130 3.870 4 H 0.096 0.904 5 C -0.193 4.193 6 C -0.252 4.252 7 C -0.005 4.005 8 C -0.494 4.494 9 H 0.107 0.893 10 C -0.195 4.195 11 N -0.459 5.459 12 Si 0.800 3.200 13 H -0.197 1.197 14 H -0.203 1.203 15 H -0.177 1.177 16 N -0.162 5.162 17 N -0.135 5.135 18 N -0.138 5.138 19 C 0.047 3.953 20 H 0.129 0.871 21 C -0.211 4.211 22 C -0.118 4.118 23 C -0.197 4.197 24 C -0.193 4.193 25 H 0.036 0.964 26 H 0.084 0.916 27 H 0.110 0.890 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.131 0.869 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.030 0.970 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.876 8.492 12.145 16.782 hybrid contribution 0.126 -1.241 -0.066 1.249 sum -7.750 7.251 12.079 16.079 Atomic orbital electron populations 1.22841 0.80836 1.03189 0.99596 1.88002 1.20327 1.27440 1.94353 1.20050 0.95890 0.84430 0.86614 0.90447 1.21771 0.94885 1.02379 1.00291 1.22591 1.14960 0.88509 0.99105 1.19429 0.98913 0.95585 0.86565 1.18890 1.40866 0.94748 0.94921 0.89266 1.26719 0.93964 1.04133 0.94648 1.70201 1.37471 1.38168 1.00078 0.85258 0.78061 0.77523 0.79144 1.19681 1.20302 1.17682 1.75077 1.17230 0.98177 1.25705 1.81290 1.21777 1.17558 0.92832 1.49975 1.44673 1.10473 1.08713 1.21695 0.93548 0.84687 0.95380 0.87073 1.22143 0.98777 0.97388 1.02752 1.21402 0.93010 0.97174 1.00185 1.21763 0.99099 0.96864 1.01949 1.21836 1.01113 0.95899 1.00497 0.96423 0.91597 0.89018 0.93516 0.91082 0.89389 0.92132 0.93411 0.86897 0.93034 0.92712 0.91145 0.91320 0.96981 0.90684 0.90846 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 10.81 113.37 1.23 2.18 16 2 O -0.38 -14.68 8.89 -148.98 -1.32 -16.01 16 3 C 0.19 6.83 2.87 29.85 0.09 6.92 16 4 H 0.08 2.21 6.30 -2.39 -0.02 2.20 16 5 C -0.14 -4.37 9.54 71.98 0.69 -3.68 16 6 C -0.12 -5.38 6.04 42.25 0.26 -5.13 16 7 C 0.13 7.33 6.68 39.67 0.27 7.60 16 8 C -0.46 -26.48 8.62 23.43 0.20 -26.28 16 9 H 0.09 4.95 6.54 -2.91 -0.02 4.93 16 10 C 0.02 1.03 5.49 85.18 0.47 1.50 16 11 N -0.83 -50.88 11.95 21.79 0.26 -50.62 16 12 Si 0.98 43.43 29.56 68.60 2.03 45.45 16 13 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 14 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 15 H -0.25 -10.64 7.11 99.48 0.71 -9.93 16 16 N -0.29 -18.03 10.58 -52.51 -0.56 -18.59 16 17 N -0.16 -8.55 13.62 37.02 0.50 -8.05 16 18 N -0.34 -14.66 2.52 -311.28 -0.78 -15.44 16 19 C 0.15 4.39 2.65 44.99 0.12 4.51 16 20 H 0.11 2.70 6.51 -2.39 -0.02 2.68 16 21 C -0.15 -3.93 9.11 71.98 0.66 -3.28 16 22 C -0.10 -2.60 2.64 -10.80 -0.03 -2.62 16 23 C -0.14 -3.93 9.04 71.98 0.65 -3.28 16 24 C -0.14 -2.24 8.84 71.98 0.64 -1.60 16 25 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.07 1.48 8.09 -2.38 -0.02 1.46 16 27 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.05 1.80 7.65 -2.39 -0.02 1.79 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.27 15.27 8.30 -92.70 -0.77 14.50 16 32 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.11 1.90 6.43 -2.39 -0.02 1.88 16 34 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.01 0.43 7.60 -2.39 -0.02 0.41 16 39 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.07 1.04 6.43 -2.38 -0.02 1.02 16 41 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -77.00 334.18 6.35 -70.65 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 1.00 Total: 15.76 kcal Atomic # 6 Polarization: -28.38 SS G_CDS: 5.22 Total: -23.16 kcal Atomic # 7 Polarization: -92.12 SS G_CDS: -0.58 Total: -92.70 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -1.32 Total: -16.01 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -77.00 6.35 -70.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.603 kcal (2) G-P(sol) polarization free energy of solvation -77.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds