Wall clock time and date at job start Mon Mar 30 2020 06:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42890 * 114.00178 * 2 1 4 4 H 1.09003 * 109.47210 * 329.99691 * 3 2 1 5 5 C 1.52998 * 109.47150 * 210.00025 * 3 2 1 6 6 C 1.50700 * 109.47454 * 89.99895 * 3 2 1 7 7 C 1.39010 * 126.77010 * 45.02184 * 6 3 2 8 8 C 1.41500 * 126.02095 * 359.94582 * 7 6 3 9 9 H 1.08000 * 120.00075 * 0.02562 * 8 7 6 10 10 C 1.39736 * 119.99623 * 179.97438 * 8 7 6 11 11 N 1.30980 * 120.00675 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99760 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46741 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47207 * 120.00071 * 12 10 8 15 15 H 1.48489 * 109.47358 * 240.00428 * 12 10 8 16 16 N 1.34840 * 107.96028 * 179.97438 * 7 6 3 17 17 N 1.28675 * 109.63393 * 359.74853 * 16 7 6 18 18 N 1.35017 * 126.77425 * 225.00112 * 6 3 2 19 19 C 1.46506 * 126.49322 * 359.97438 * 18 6 3 20 20 H 1.08998 * 109.46566 * 359.97438 * 19 18 6 21 21 C 1.52997 * 109.47289 * 119.99743 * 19 18 6 22 22 C 1.52992 * 109.46999 * 240.00211 * 19 18 6 23 23 C 1.52997 * 109.47482 * 59.99650 * 22 19 18 24 24 C 1.52996 * 109.47224 * 179.97438 * 22 19 18 25 25 H 1.09000 * 109.47636 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47446 * 300.00239 * 1 2 3 27 27 H 1.09004 * 109.47150 * 59.99996 * 1 2 3 28 28 H 1.09005 * 109.47256 * 299.99700 * 5 3 2 29 29 H 1.08995 * 109.47640 * 59.99788 * 5 3 2 30 30 H 1.09007 * 109.47216 * 180.02562 * 5 3 2 31 31 H 0.97003 * 120.00741 * 179.97438 * 11 10 8 32 32 H 1.09002 * 109.47153 * 179.97438 * 21 19 18 33 33 H 1.09001 * 109.46832 * 60.00146 * 21 19 18 34 34 H 1.09004 * 109.47261 * 300.00128 * 21 19 18 35 35 H 1.09001 * 109.47066 * 299.99819 * 22 19 18 36 36 H 1.09001 * 109.47289 * 60.00300 * 23 22 19 37 37 H 1.09004 * 109.47261 * 180.02562 * 23 22 19 38 38 H 1.09002 * 109.47153 * 300.00216 * 23 22 19 39 39 H 1.09004 * 109.47552 * 59.99646 * 24 22 19 40 40 H 1.09004 * 109.47298 * 179.97438 * 24 22 19 41 41 H 1.09001 * 109.46993 * 299.99360 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 3.3589 1.2631 -0.7212 6 6 2.2146 1.7643 1.4208 7 6 2.7451 1.0195 2.4677 8 6 3.1944 -0.3201 2.3918 9 1 3.1409 -0.8555 1.4553 10 6 3.7084 -0.9500 3.5283 11 7 3.7739 -0.3007 4.6640 12 14 4.3010 -2.7188 3.4283 13 1 4.1202 -3.2238 2.0435 14 1 5.7390 -2.7805 3.7935 15 1 3.5152 -3.5580 4.3682 16 7 2.7556 1.7982 3.5685 17 7 2.2807 2.9591 3.2814 18 7 1.9188 2.9802 1.9279 19 6 1.3363 4.1099 1.1993 20 1 1.1699 3.8252 0.1604 21 6 0.0032 4.4983 1.8419 22 6 2.2950 5.3009 1.2540 23 6 3.6281 4.9125 0.6114 24 6 1.6870 6.4805 0.4926 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 4.0242 0.5692 -0.2074 29 1 3.2112 0.9312 -1.7489 30 1 3.8025 2.2588 -0.7209 31 1 4.1304 -0.7381 5.4530 32 1 -0.4300 5.3391 1.3001 33 1 0.1700 4.7831 2.8808 34 1 -0.6799 3.6497 1.8029 35 1 2.4618 5.5857 2.2928 36 1 3.4614 4.6277 -0.4275 37 1 4.3113 5.7609 0.6508 38 1 4.0615 4.0720 1.1535 39 1 0.7371 6.7574 0.9500 40 1 2.3698 7.3292 0.5319 41 1 1.5206 6.1954 -0.5462 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544863.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:42 Heat of formation + Delta-G solvation = 29.285377 kcal Electronic energy + Delta-G solvation = -21986.161557 eV Core-core repulsion = 18903.020538 eV Total energy + Delta-G solvation = -3083.141019 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.14906 -37.24075 -36.89595 -33.26271 -32.16984 -31.31273 -29.23612 -28.49718 -26.87106 -25.88488 -24.99186 -23.56533 -22.49177 -21.07535 -19.29930 -18.89474 -16.96698 -15.99182 -15.72682 -14.91791 -14.72202 -14.43439 -14.38930 -14.07684 -13.49036 -13.08932 -12.87758 -12.62043 -12.26952 -12.23368 -11.99940 -11.81164 -11.65007 -11.46124 -11.15968 -11.10508 -11.06698 -10.78710 -10.72606 -10.66593 -10.56593 -10.23812 -10.05744 -9.62847 -9.18880 -9.09123 -8.67561 -8.35787 -7.31922 -6.27357 -4.02803 2.85953 3.22414 3.28034 3.34123 3.60566 4.23504 4.38769 4.48736 4.76783 5.02012 5.15354 5.32539 5.43810 5.50671 5.58858 5.64420 5.68165 5.74325 5.74456 5.84031 5.89477 5.93104 5.98400 6.02263 6.06641 6.13217 6.19661 6.29338 6.38443 6.39352 6.50589 6.55961 6.84395 7.03680 7.26102 7.37578 7.62110 7.94745 8.25519 8.68591 8.94976 9.22813 10.31029 10.69404 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.020830 B = 0.007089 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.923473 B = 3948.963731 C = 4455.411389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.362 6.362 3 C 0.195 3.805 4 H 0.040 0.960 5 C -0.140 4.140 6 C -0.154 4.154 7 C 0.173 3.827 8 C -0.433 4.433 9 H 0.091 0.909 10 C 0.070 3.930 11 N -0.779 5.779 12 Si 0.903 3.097 13 H -0.262 1.262 14 H -0.279 1.279 15 H -0.279 1.279 16 N -0.235 5.235 17 N -0.123 5.123 18 N -0.366 5.366 19 C 0.168 3.832 20 H 0.083 0.917 21 C -0.159 4.159 22 C -0.102 4.102 23 C -0.144 4.144 24 C -0.145 4.145 25 H 0.078 0.922 26 H 0.037 0.963 27 H 0.027 0.973 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.269 0.731 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.797 7.361 -10.483 13.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.135 3.865 4 H 0.058 0.942 5 C -0.198 4.198 6 C -0.285 4.285 7 C 0.044 3.956 8 C -0.469 4.469 9 H 0.109 0.891 10 C -0.148 4.148 11 N -0.406 5.406 12 Si 0.729 3.271 13 H -0.186 1.186 14 H -0.205 1.205 15 H -0.204 1.204 16 N -0.108 5.108 17 N -0.099 5.099 18 N -0.164 5.164 19 C 0.063 3.937 20 H 0.101 0.899 21 C -0.217 4.217 22 C -0.121 4.121 23 C -0.201 4.201 24 C -0.203 4.203 25 H 0.097 0.903 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.568 7.968 -8.933 12.812 hybrid contribution -0.084 -1.073 -0.872 1.385 sum -4.652 6.895 -9.805 12.858 Atomic orbital electron populations 1.22608 0.82625 1.01847 0.98805 1.88015 1.18231 1.27227 1.94464 1.19720 0.93976 0.83680 0.89135 0.94221 1.21803 0.96683 1.02399 0.98892 1.21752 1.20113 0.88765 0.97840 1.18927 0.96646 0.94747 0.85324 1.18768 1.37019 0.94347 0.96756 0.89119 1.25841 0.94741 0.99144 0.95124 1.70043 1.34185 1.36331 1.00007 0.86346 0.78473 0.83156 0.79172 1.18585 1.20454 1.20440 1.75139 1.14843 0.96986 1.23782 1.81417 1.19475 1.18207 0.90811 1.49469 1.48001 1.09277 1.09637 1.20993 0.92676 0.85267 0.94736 0.89939 1.22162 0.96005 1.01320 1.02243 1.21424 0.95264 0.94123 1.01334 1.21795 0.96426 1.01688 1.00232 1.21885 1.00850 0.97564 0.99992 0.90306 0.94480 0.95426 0.90400 0.93040 0.92137 0.92057 0.91424 0.91257 0.92572 0.89970 0.93129 0.93000 0.91807 0.92280 0.92485 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.81 101.05 1.09 1.72 16 2 O -0.36 -7.29 8.79 -35.23 -0.31 -7.60 16 3 C 0.19 3.74 2.87 -27.88 -0.08 3.66 16 4 H 0.04 0.67 6.31 -51.93 -0.33 0.34 16 5 C -0.14 -2.43 9.54 37.16 0.35 -2.07 16 6 C -0.15 -3.55 6.04 -80.91 -0.49 -4.04 16 7 C 0.17 4.77 6.69 -85.02 -0.57 4.20 16 8 C -0.43 -12.03 8.68 -37.78 -0.33 -12.36 16 9 H 0.09 2.45 6.58 -52.49 -0.35 2.10 16 10 C 0.07 1.90 5.49 -17.36 -0.10 1.81 16 11 N -0.78 -22.48 11.92 55.54 0.66 -21.82 16 12 Si 0.90 20.30 29.56 -169.99 -5.02 15.28 16 13 H -0.26 -5.77 7.11 56.52 0.40 -5.36 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 16 N -0.23 -6.83 10.56 32.05 0.34 -6.49 16 17 N -0.12 -3.15 13.62 60.35 0.82 -2.32 16 18 N -0.37 -7.84 2.52 -49.74 -0.13 -7.97 16 19 C 0.17 2.69 2.65 -67.93 -0.18 2.51 16 20 H 0.08 1.21 6.52 -51.93 -0.34 0.87 16 21 C -0.16 -2.28 9.12 37.16 0.34 -1.94 16 22 C -0.10 -1.46 2.63 -90.63 -0.24 -1.69 16 23 C -0.14 -2.13 9.03 37.16 0.34 -1.80 16 24 C -0.15 -1.53 8.84 37.16 0.33 -1.20 16 25 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.03 0.37 8.09 -51.93 -0.42 -0.05 16 28 H 0.08 1.53 7.86 -51.93 -0.41 1.13 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.27 7.15 8.30 -40.82 -0.34 6.81 16 32 H 0.07 0.74 6.43 -51.93 -0.33 0.40 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 1.19 7.60 -51.93 -0.39 0.80 16 39 H 0.06 0.57 6.43 -51.93 -0.33 0.23 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 334.37 15.07 5.04 5.04 Total: -1.00 -32.02 334.37 -4.82 -36.84 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.69 Total: 0.26 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: 0.47 Total: -11.21 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 1.70 Total: -38.60 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.31 Total: -7.60 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.02 -4.82 -36.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544863.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.123 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds