Wall clock time and date at job start Mon Mar 30 2020 06:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42890 * 114.00178 * 2 1 4 4 H 1.09003 * 109.47210 * 329.99691 * 3 2 1 5 5 C 1.52998 * 109.47150 * 210.00025 * 3 2 1 6 6 C 1.50700 * 109.47454 * 89.99895 * 3 2 1 7 7 C 1.39010 * 126.77010 * 45.02184 * 6 3 2 8 8 C 1.41500 * 126.02095 * 359.94582 * 7 6 3 9 9 H 1.08000 * 120.00075 * 0.02562 * 8 7 6 10 10 C 1.39736 * 119.99623 * 179.97438 * 8 7 6 11 11 N 1.30980 * 120.00675 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99760 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46741 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47207 * 120.00071 * 12 10 8 15 15 H 1.48489 * 109.47358 * 240.00428 * 12 10 8 16 16 N 1.34840 * 107.96028 * 179.97438 * 7 6 3 17 17 N 1.28675 * 109.63393 * 359.74853 * 16 7 6 18 18 N 1.35017 * 126.77425 * 225.00112 * 6 3 2 19 19 C 1.46506 * 126.49322 * 359.97438 * 18 6 3 20 20 H 1.08998 * 109.46566 * 359.97438 * 19 18 6 21 21 C 1.52997 * 109.47289 * 119.99743 * 19 18 6 22 22 C 1.52992 * 109.46999 * 240.00211 * 19 18 6 23 23 C 1.52997 * 109.47482 * 59.99650 * 22 19 18 24 24 C 1.52996 * 109.47224 * 179.97438 * 22 19 18 25 25 H 1.09000 * 109.47636 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47446 * 300.00239 * 1 2 3 27 27 H 1.09004 * 109.47150 * 59.99996 * 1 2 3 28 28 H 1.09005 * 109.47256 * 299.99700 * 5 3 2 29 29 H 1.08995 * 109.47640 * 59.99788 * 5 3 2 30 30 H 1.09007 * 109.47216 * 180.02562 * 5 3 2 31 31 H 0.97003 * 120.00741 * 179.97438 * 11 10 8 32 32 H 1.09002 * 109.47153 * 179.97438 * 21 19 18 33 33 H 1.09001 * 109.46832 * 60.00146 * 21 19 18 34 34 H 1.09004 * 109.47261 * 300.00128 * 21 19 18 35 35 H 1.09001 * 109.47066 * 299.99819 * 22 19 18 36 36 H 1.09001 * 109.47289 * 60.00300 * 23 22 19 37 37 H 1.09004 * 109.47261 * 180.02562 * 23 22 19 38 38 H 1.09002 * 109.47153 * 300.00216 * 23 22 19 39 39 H 1.09004 * 109.47552 * 59.99646 * 24 22 19 40 40 H 1.09004 * 109.47298 * 179.97438 * 24 22 19 41 41 H 1.09001 * 109.46993 * 299.99360 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 3.3589 1.2631 -0.7212 6 6 2.2146 1.7643 1.4208 7 6 2.7451 1.0195 2.4677 8 6 3.1944 -0.3201 2.3918 9 1 3.1409 -0.8555 1.4553 10 6 3.7084 -0.9500 3.5283 11 7 3.7739 -0.3007 4.6640 12 14 4.3010 -2.7188 3.4283 13 1 4.1202 -3.2238 2.0435 14 1 5.7390 -2.7805 3.7935 15 1 3.5152 -3.5580 4.3682 16 7 2.7556 1.7982 3.5685 17 7 2.2807 2.9591 3.2814 18 7 1.9188 2.9802 1.9279 19 6 1.3363 4.1099 1.1993 20 1 1.1699 3.8252 0.1604 21 6 0.0032 4.4983 1.8419 22 6 2.2950 5.3009 1.2540 23 6 3.6281 4.9125 0.6114 24 6 1.6870 6.4805 0.4926 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 4.0242 0.5692 -0.2074 29 1 3.2112 0.9312 -1.7489 30 1 3.8025 2.2588 -0.7209 31 1 4.1304 -0.7381 5.4530 32 1 -0.4300 5.3391 1.3001 33 1 0.1700 4.7831 2.8808 34 1 -0.6799 3.6497 1.8029 35 1 2.4618 5.5857 2.2928 36 1 3.4614 4.6277 -0.4275 37 1 4.3113 5.7609 0.6508 38 1 4.0615 4.0720 1.1535 39 1 0.7371 6.7574 0.9500 40 1 2.3698 7.3292 0.5319 41 1 1.5206 6.1954 -0.5462 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544863.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:41 Heat of formation + Delta-G solvation = 7.865212 kcal Electronic energy + Delta-G solvation = -21987.090405 eV Core-core repulsion = 18903.020538 eV Total energy + Delta-G solvation = -3084.069867 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.98723 -38.76700 -38.24732 -35.19680 -33.78118 -32.81233 -30.70826 -30.31877 -27.95535 -27.23381 -26.85513 -25.00641 -24.11496 -22.65332 -21.01423 -20.46669 -18.71637 -17.57322 -17.36972 -16.57385 -16.39220 -15.93298 -15.68650 -15.48068 -14.86614 -14.78390 -14.28497 -14.06712 -13.58627 -13.45053 -13.29422 -13.04482 -12.98905 -12.89206 -12.81841 -12.76996 -12.62254 -12.33373 -12.10910 -11.99619 -11.89933 -11.67976 -11.58477 -11.46046 -11.10842 -10.79077 -10.43886 -10.17604 -9.29627 -8.25351 -6.08926 1.03377 1.43009 1.43140 1.59165 1.99183 2.36622 2.39010 3.05319 3.52600 3.61779 3.83575 3.88821 4.01572 4.10808 4.23518 4.37751 4.44120 4.51407 4.53745 4.66166 4.71520 4.74428 4.78844 4.83819 4.87798 4.96242 4.97135 5.00118 5.10793 5.15011 5.23379 5.27429 5.35945 5.43038 5.45952 5.60424 5.64177 6.41827 6.55152 6.60021 6.98043 7.19114 8.37584 8.74303 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.020830 B = 0.007089 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.923473 B = 3948.963731 C = 4455.411389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.191 3.809 4 H 0.078 0.922 5 C -0.135 4.135 6 C -0.117 4.117 7 C 0.127 3.873 8 C -0.458 4.458 9 H 0.091 0.909 10 C 0.017 3.983 11 N -0.830 5.830 12 Si 0.978 3.022 13 H -0.253 1.253 14 H -0.274 1.274 15 H -0.275 1.275 16 N -0.292 5.292 17 N -0.159 5.159 18 N -0.342 5.342 19 C 0.149 3.851 20 H 0.112 0.888 21 C -0.153 4.153 22 C -0.097 4.097 23 C -0.141 4.141 24 C -0.136 4.136 25 H 0.093 0.907 26 H 0.015 0.985 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.269 0.731 32 H 0.113 0.887 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.014 0.986 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.142 8.422 -14.219 17.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C 0.131 3.869 4 H 0.095 0.905 5 C -0.193 4.193 6 C -0.252 4.252 7 C -0.005 4.005 8 C -0.495 4.495 9 H 0.109 0.891 10 C -0.195 4.195 11 N -0.459 5.459 12 Si 0.800 3.200 13 H -0.176 1.176 14 H -0.199 1.199 15 H -0.201 1.201 16 N -0.161 5.161 17 N -0.135 5.135 18 N -0.138 5.138 19 C 0.047 3.953 20 H 0.129 0.871 21 C -0.211 4.211 22 C -0.117 4.117 23 C -0.198 4.198 24 C -0.194 4.194 25 H 0.111 0.889 26 H 0.033 0.967 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.132 0.868 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.033 0.967 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.943 9.101 -12.661 16.687 hybrid contribution 0.196 -1.202 0.075 1.220 sum -5.747 7.898 -12.587 15.932 Atomic orbital electron populations 1.22823 0.80768 1.03265 0.99518 1.87999 1.20385 1.27523 1.94358 1.20047 0.95908 0.84363 0.86632 0.90452 1.21779 0.94877 1.02426 1.00219 1.22583 1.15371 0.88277 0.98987 1.19442 0.98791 0.95722 0.86565 1.18962 1.38391 0.95034 0.97085 0.89106 1.26734 0.94726 1.03581 0.94504 1.70201 1.36534 1.38352 1.00853 0.85216 0.77884 0.77479 0.79402 1.17595 1.19934 1.20059 1.75081 1.17214 0.98249 1.25599 1.81294 1.21740 1.17550 0.92892 1.49970 1.44910 1.10193 1.08756 1.21694 0.93815 0.84255 0.95539 0.87060 1.22145 0.94750 1.02652 1.01543 1.21392 0.94854 0.94844 1.00601 1.21776 0.96847 1.00502 1.00715 1.21839 1.01347 0.95740 1.00463 0.88852 0.96652 0.91533 0.93542 0.89442 0.91029 0.92138 0.86833 0.93400 0.93416 0.92730 0.90849 0.91365 0.96694 0.90994 0.91346 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 10.81 113.37 1.23 2.21 16 2 O -0.39 -14.76 8.79 -148.98 -1.31 -16.07 16 3 C 0.19 6.85 2.87 29.85 0.09 6.94 16 4 H 0.08 2.21 6.31 -2.39 -0.02 2.20 16 5 C -0.14 -4.37 9.54 71.98 0.69 -3.68 16 6 C -0.12 -5.41 6.04 42.25 0.26 -5.16 16 7 C 0.13 7.32 6.69 39.67 0.27 7.59 16 8 C -0.46 -26.51 8.68 23.44 0.20 -26.31 16 9 H 0.09 5.05 6.58 -2.91 -0.02 5.03 16 10 C 0.02 0.98 5.49 85.18 0.47 1.45 16 11 N -0.83 -50.88 11.92 21.79 0.26 -50.62 16 12 Si 0.98 43.35 29.56 68.60 2.03 45.37 16 13 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 14 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 15 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 16 N -0.29 -18.02 10.56 -52.51 -0.55 -18.57 16 17 N -0.16 -8.57 13.62 37.02 0.50 -8.07 16 18 N -0.34 -14.67 2.52 -311.29 -0.78 -15.46 16 19 C 0.15 4.40 2.65 44.99 0.12 4.52 16 20 H 0.11 2.70 6.52 -2.39 -0.02 2.69 16 21 C -0.15 -4.00 9.12 71.98 0.66 -3.34 16 22 C -0.10 -2.56 2.63 -10.80 -0.03 -2.59 16 23 C -0.14 -3.91 9.03 71.98 0.65 -3.26 16 24 C -0.14 -2.24 8.84 71.98 0.64 -1.60 16 25 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.07 1.49 8.09 -2.39 -0.02 1.47 16 28 H 0.05 1.80 7.86 -2.38 -0.02 1.78 16 29 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.07 2.11 8.14 -2.38 -0.02 2.10 16 31 H 0.27 15.23 8.30 -92.71 -0.77 14.46 16 32 H 0.11 1.94 6.43 -2.39 -0.02 1.92 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 37 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.01 0.53 7.60 -2.39 -0.02 0.51 16 39 H 0.07 1.02 6.43 -2.39 -0.02 1.01 16 40 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -77.10 334.37 6.37 -70.73 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 1.00 Total: 15.92 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 5.22 Total: -23.24 kcal Atomic # 7 Polarization: -92.14 SS G_CDS: -0.58 Total: -92.72 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -1.31 Total: -16.07 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -77.10 6.37 -70.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544863.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.596 kcal (2) G-P(sol) polarization free energy of solvation -77.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds