Wall clock time and date at job start Mon Mar 30 2020 06:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47013 * 2 1 4 4 C 1.52991 * 109.47014 * 175.48712 * 3 2 1 5 5 C 1.53003 * 109.47716 * 294.47786 * 4 3 2 6 6 N 1.46499 * 109.47344 * 295.49330 * 3 2 1 7 7 N 1.40119 * 126.48835 * 300.02234 * 6 3 2 8 8 N 1.28676 * 108.93469 * 179.73723 * 7 6 3 9 9 C 1.34846 * 109.63009 * 359.97438 * 8 7 6 10 10 C 1.41498 * 126.01615 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99679 * 180.02562 * 10 9 8 12 12 C 1.39738 * 120.00027 * 0.02562 * 10 9 8 13 13 N 1.30987 * 119.99833 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99898 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46974 * 60.00398 * 14 12 10 16 16 H 1.48501 * 109.46939 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47231 * 300.00490 * 14 12 10 18 18 C 1.35018 * 126.49262 * 119.70878 * 6 3 2 19 19 C 1.50699 * 126.77070 * 0.21763 * 18 6 3 20 20 H 1.08995 * 109.47384 * 344.99805 * 19 18 6 21 21 C 1.53005 * 109.47110 * 105.00358 * 19 18 6 22 22 O 1.42905 * 109.46862 * 224.99693 * 19 18 6 23 23 C 1.42903 * 113.99836 * 90.00404 * 22 19 18 24 24 H 1.09002 * 109.47474 * 65.70781 * 1 2 3 25 25 H 1.09000 * 109.47023 * 185.70573 * 1 2 3 26 26 H 1.09003 * 109.47077 * 305.70657 * 1 2 3 27 27 H 1.09002 * 109.47044 * 240.00550 * 2 1 3 28 28 H 1.08996 * 109.47295 * 120.00733 * 2 1 3 29 29 H 1.09004 * 109.46851 * 55.49265 * 3 2 1 30 30 H 1.09004 * 109.47121 * 54.48036 * 4 3 2 31 31 H 1.09001 * 109.47366 * 174.47686 * 4 3 2 32 32 H 1.08995 * 109.46843 * 306.13088 * 5 4 3 33 33 H 1.09004 * 109.46634 * 66.12493 * 5 4 3 34 34 H 1.08994 * 109.47588 * 186.12516 * 5 4 3 35 35 H 0.96999 * 119.99304 * 179.97438 * 13 12 10 36 36 H 1.08995 * 109.47448 * 59.99486 * 21 19 18 37 37 H 1.08999 * 109.47181 * 180.02562 * 21 19 18 38 38 H 1.09005 * 109.46294 * 299.99648 * 21 19 18 39 39 H 1.08994 * 109.47002 * 179.97438 * 23 22 19 40 40 H 1.09007 * 109.46922 * 299.99945 * 23 22 19 41 41 H 1.09007 * 109.46829 * 59.99627 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5657 1.4440 0.1135 5 6 3.9765 0.8815 1.4758 6 7 1.6423 2.1011 -1.2467 7 7 1.9928 1.7082 -2.5452 8 7 1.4565 2.5209 -3.3864 9 6 0.7498 3.4584 -2.7231 10 6 0.0217 4.5209 -3.3091 11 1 -0.5119 5.2199 -2.6823 12 6 -0.0068 4.6655 -4.6986 13 7 0.6401 3.8173 -5.4588 14 14 -0.9686 6.0677 -5.4722 15 1 -0.4299 7.3639 -4.9875 16 1 -0.8408 5.9994 -6.9501 17 1 -2.4001 5.9540 -5.0937 18 6 0.8638 3.1982 -1.3624 19 6 0.2401 3.9844 -0.2382 20 1 0.2811 3.3995 0.6807 21 6 1.0079 5.2936 -0.0441 22 8 -1.1222 4.2742 -0.5581 23 6 -2.0474 3.2790 -0.1157 24 1 -0.3634 0.4228 -0.9367 25 1 -0.3633 -1.0226 0.1022 26 1 -0.3633 0.5998 0.8345 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6122 1.9791 0.8469 30 1 3.9895 0.8256 -0.6778 31 1 3.9364 2.4643 0.0150 32 1 3.4658 1.4327 2.2654 33 1 3.7015 -0.1718 1.5317 34 1 5.0545 0.9827 1.6007 35 1 0.6199 3.9175 -6.4234 36 1 0.9670 5.8785 -0.9630 37 1 0.5571 5.8621 0.7693 38 1 2.0471 5.0725 0.1999 39 1 -3.0588 3.5729 -0.3962 40 1 -1.8038 2.3239 -0.5811 41 1 -1.9852 3.1814 0.9682 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:14 Heat of formation + Delta-G solvation = 26.551144 kcal Electronic energy + Delta-G solvation = -21960.098305 eV Core-core repulsion = 18876.838720 eV Total energy + Delta-G solvation = -3083.259585 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.12756 -37.22832 -36.59182 -33.19527 -32.00006 -31.66014 -30.44590 -28.49648 -26.27683 -25.84892 -24.73978 -22.64744 -22.50155 -21.63825 -19.44871 -18.89831 -16.95615 -16.03212 -15.71677 -14.91350 -14.70876 -14.51553 -14.36586 -14.16695 -13.77814 -13.15491 -12.83340 -12.74769 -12.42229 -12.05950 -11.97772 -11.77310 -11.61671 -11.41371 -11.14898 -11.10953 -11.03375 -10.85437 -10.78918 -10.67636 -10.46735 -10.24055 -10.06954 -9.65862 -9.16375 -9.09067 -8.67375 -8.35453 -7.31838 -6.27114 -4.02717 2.86676 3.25615 3.27076 3.30488 3.60802 4.23348 4.38979 4.48808 4.77625 5.05391 5.14613 5.30602 5.41482 5.47829 5.48173 5.59896 5.64526 5.71701 5.75572 5.81630 5.86966 5.91583 5.98007 6.05682 6.09873 6.13374 6.20976 6.29431 6.37036 6.37958 6.47437 6.49056 6.83638 7.03685 7.26254 7.37647 7.62347 7.94783 8.25770 8.67640 8.95113 9.22634 10.31143 10.69614 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.020440 B = 0.007077 C = 0.006345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.519806 B = 3955.354936 C = 4411.699247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C 0.167 3.833 4 C -0.130 4.130 5 C -0.148 4.148 6 N -0.366 5.366 7 N -0.123 5.123 8 N -0.235 5.235 9 C 0.173 3.827 10 C -0.434 4.434 11 H 0.090 0.910 12 C 0.070 3.930 13 N -0.779 5.779 14 Si 0.905 3.095 15 H -0.269 1.269 16 H -0.283 1.283 17 H -0.269 1.269 18 C -0.155 4.155 19 C 0.195 3.805 20 H 0.040 0.960 21 C -0.139 4.139 22 O -0.362 6.362 23 C 0.037 3.963 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.270 0.730 36 H 0.077 0.923 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.038 0.962 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.299 -2.978 13.375 13.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C 0.063 3.937 4 C -0.169 4.169 5 C -0.206 4.206 6 N -0.164 5.164 7 N -0.099 5.099 8 N -0.108 5.108 9 C 0.044 3.956 10 C -0.470 4.470 11 H 0.108 0.892 12 C -0.148 4.148 13 N -0.406 5.406 14 Si 0.731 3.269 15 H -0.194 1.194 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.285 4.285 19 C 0.135 3.865 20 H 0.058 0.942 21 C -0.197 4.197 22 O -0.279 6.279 23 C -0.060 4.060 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.066 -3.892 12.177 12.828 hybrid contribution -0.941 0.972 0.398 1.410 sum 0.125 -2.921 12.574 12.910 Atomic orbital electron populations 1.21741 0.95650 1.01010 1.02223 1.21903 0.96471 0.95709 1.02791 1.21061 0.94931 0.93470 0.84280 1.21837 0.94618 1.02335 0.98118 1.21788 1.01194 1.01018 0.96604 1.49466 1.38881 1.21557 1.06516 1.81413 1.23221 1.22255 0.83044 1.75141 1.10040 1.03466 1.22116 1.18909 0.95923 0.94743 0.86001 1.18689 1.27778 1.09538 0.90966 0.89222 1.25839 0.94866 0.96421 0.97704 1.70030 1.33132 1.32189 1.05226 0.86443 0.80738 0.81973 0.77787 1.19382 1.20874 1.19357 1.21748 1.11529 0.97641 0.97587 1.19725 0.81626 0.94029 0.91147 0.94190 1.21784 0.98470 0.96777 1.02683 1.88015 1.15221 1.44156 1.80516 1.22638 0.93688 0.92988 0.96669 0.92130 0.92947 0.93325 0.90602 0.90987 0.89908 0.90665 0.91585 0.92779 0.92404 0.92507 0.91942 0.90377 0.93009 0.92282 0.90362 0.94305 0.95465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.73 37.16 0.36 -1.81 16 2 C -0.13 -1.87 5.42 -26.73 -0.14 -2.01 16 3 C 0.17 2.68 2.54 -67.93 -0.17 2.50 16 4 C -0.13 -1.87 5.67 -26.73 -0.15 -2.02 16 5 C -0.15 -1.54 9.53 37.16 0.35 -1.19 16 6 N -0.37 -7.86 2.82 -49.74 -0.14 -8.00 16 7 N -0.12 -3.16 13.62 60.35 0.82 -2.33 16 8 N -0.23 -6.84 10.56 32.05 0.34 -6.50 16 9 C 0.17 4.80 6.69 -85.01 -0.57 4.23 16 10 C -0.43 -12.06 8.69 -37.78 -0.33 -12.39 16 11 H 0.09 2.41 6.59 -52.49 -0.35 2.06 16 12 C 0.07 1.91 5.49 -17.35 -0.10 1.82 16 13 N -0.78 -22.50 11.92 55.54 0.66 -21.84 16 14 Si 0.90 20.35 29.56 -169.99 -5.02 15.32 16 15 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 18 C -0.15 -3.57 6.04 -80.91 -0.49 -4.06 16 19 C 0.19 3.74 2.88 -27.88 -0.08 3.66 16 20 H 0.04 0.67 6.30 -51.93 -0.33 0.35 16 21 C -0.14 -2.43 9.54 37.16 0.35 -2.08 16 22 O -0.36 -7.26 8.79 -35.23 -0.31 -7.57 16 23 C 0.04 0.61 10.81 101.05 1.09 1.70 16 24 H 0.06 1.11 7.90 -51.93 -0.41 0.70 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.07 0.81 6.52 -51.93 -0.34 0.47 16 29 H 0.08 1.21 6.52 -51.93 -0.34 0.88 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.55 6.79 -51.93 -0.35 0.19 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.27 7.22 8.30 -40.82 -0.34 6.88 16 36 H 0.08 1.54 7.87 -51.93 -0.41 1.14 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.03 0.37 8.09 -51.93 -0.42 -0.05 16 LS Contribution 336.03 15.07 5.06 5.06 Total: -1.00 -31.97 336.03 -5.18 -37.15 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.73 Total: 0.36 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 0.13 Total: -11.65 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 1.68 Total: -38.67 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.31 Total: -7.57 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.97 -5.18 -37.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.698 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds