Wall clock time and date at job start Mon Mar 30 2020 06:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47013 * 2 1 4 4 C 1.52991 * 109.47014 * 175.48712 * 3 2 1 5 5 C 1.53003 * 109.47716 * 294.47786 * 4 3 2 6 6 N 1.46499 * 109.47344 * 295.49330 * 3 2 1 7 7 N 1.40119 * 126.48835 * 300.02234 * 6 3 2 8 8 N 1.28676 * 108.93469 * 179.73723 * 7 6 3 9 9 C 1.34846 * 109.63009 * 359.97438 * 8 7 6 10 10 C 1.41498 * 126.01615 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99679 * 180.02562 * 10 9 8 12 12 C 1.39738 * 120.00027 * 0.02562 * 10 9 8 13 13 N 1.30987 * 119.99833 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99898 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46974 * 60.00398 * 14 12 10 16 16 H 1.48501 * 109.46939 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47231 * 300.00490 * 14 12 10 18 18 C 1.35018 * 126.49262 * 119.70878 * 6 3 2 19 19 C 1.50699 * 126.77070 * 0.21763 * 18 6 3 20 20 H 1.08995 * 109.47384 * 344.99805 * 19 18 6 21 21 C 1.53005 * 109.47110 * 105.00358 * 19 18 6 22 22 O 1.42905 * 109.46862 * 224.99693 * 19 18 6 23 23 C 1.42903 * 113.99836 * 90.00404 * 22 19 18 24 24 H 1.09002 * 109.47474 * 65.70781 * 1 2 3 25 25 H 1.09000 * 109.47023 * 185.70573 * 1 2 3 26 26 H 1.09003 * 109.47077 * 305.70657 * 1 2 3 27 27 H 1.09002 * 109.47044 * 240.00550 * 2 1 3 28 28 H 1.08996 * 109.47295 * 120.00733 * 2 1 3 29 29 H 1.09004 * 109.46851 * 55.49265 * 3 2 1 30 30 H 1.09004 * 109.47121 * 54.48036 * 4 3 2 31 31 H 1.09001 * 109.47366 * 174.47686 * 4 3 2 32 32 H 1.08995 * 109.46843 * 306.13088 * 5 4 3 33 33 H 1.09004 * 109.46634 * 66.12493 * 5 4 3 34 34 H 1.08994 * 109.47588 * 186.12516 * 5 4 3 35 35 H 0.96999 * 119.99304 * 179.97438 * 13 12 10 36 36 H 1.08995 * 109.47448 * 59.99486 * 21 19 18 37 37 H 1.08999 * 109.47181 * 180.02562 * 21 19 18 38 38 H 1.09005 * 109.46294 * 299.99648 * 21 19 18 39 39 H 1.08994 * 109.47002 * 179.97438 * 23 22 19 40 40 H 1.09007 * 109.46922 * 299.99945 * 23 22 19 41 41 H 1.09007 * 109.46829 * 59.99627 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5657 1.4440 0.1135 5 6 3.9765 0.8815 1.4758 6 7 1.6423 2.1011 -1.2467 7 7 1.9928 1.7082 -2.5452 8 7 1.4565 2.5209 -3.3864 9 6 0.7498 3.4584 -2.7231 10 6 0.0217 4.5209 -3.3091 11 1 -0.5119 5.2199 -2.6823 12 6 -0.0068 4.6655 -4.6986 13 7 0.6401 3.8173 -5.4588 14 14 -0.9686 6.0677 -5.4722 15 1 -0.4299 7.3639 -4.9875 16 1 -0.8408 5.9994 -6.9501 17 1 -2.4001 5.9540 -5.0937 18 6 0.8638 3.1982 -1.3624 19 6 0.2401 3.9844 -0.2382 20 1 0.2811 3.3995 0.6807 21 6 1.0079 5.2936 -0.0441 22 8 -1.1222 4.2742 -0.5581 23 6 -2.0474 3.2790 -0.1157 24 1 -0.3634 0.4228 -0.9367 25 1 -0.3633 -1.0226 0.1022 26 1 -0.3633 0.5998 0.8345 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6122 1.9791 0.8469 30 1 3.9895 0.8256 -0.6778 31 1 3.9364 2.4643 0.0150 32 1 3.4658 1.4327 2.2654 33 1 3.7015 -0.1718 1.5317 34 1 5.0545 0.9827 1.6007 35 1 0.6199 3.9175 -6.4234 36 1 0.9670 5.8785 -0.9630 37 1 0.5571 5.8621 0.7693 38 1 2.0471 5.0725 0.1999 39 1 -3.0588 3.5729 -0.3962 40 1 -1.8038 2.3239 -0.5811 41 1 -1.9852 3.1814 0.9682 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:13 Heat of formation + Delta-G solvation = 5.266447 kcal Electronic energy + Delta-G solvation = -21961.021278 eV Core-core repulsion = 18876.838720 eV Total energy + Delta-G solvation = -3084.182558 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.97447 -38.76180 -37.97182 -35.14780 -33.61211 -32.78439 -32.10823 -30.33288 -27.69523 -27.19178 -26.54129 -24.14150 -23.81511 -23.19054 -21.22608 -20.51747 -18.72319 -17.60200 -17.36212 -16.57319 -16.40344 -15.91313 -15.68326 -15.54348 -15.07032 -14.79880 -14.45411 -14.20176 -13.60500 -13.35907 -13.21809 -13.18280 -12.92201 -12.87942 -12.80500 -12.75654 -12.42898 -12.32392 -12.20218 -12.07164 -11.91428 -11.63054 -11.56303 -11.51061 -11.07073 -10.79183 -10.43395 -10.17416 -9.29810 -8.25206 -6.08996 1.03537 1.42847 1.46640 1.55256 1.99203 2.36548 2.39100 3.05417 3.52944 3.61778 3.84307 3.87411 4.00400 4.11869 4.25013 4.37357 4.41984 4.45317 4.52042 4.54979 4.64680 4.69658 4.82965 4.85984 4.88598 4.94231 4.97356 5.12031 5.13455 5.15436 5.16516 5.24182 5.34423 5.40202 5.42357 5.59637 5.63895 6.41873 6.55092 6.59350 6.98017 7.18810 8.37372 8.74117 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.020440 B = 0.007077 C = 0.006345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.519806 B = 3955.354936 C = 4411.699247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.149 3.851 4 C -0.125 4.125 5 C -0.139 4.139 6 N -0.343 5.343 7 N -0.160 5.160 8 N -0.292 5.292 9 C 0.128 3.872 10 C -0.460 4.460 11 H 0.091 0.909 12 C 0.018 3.982 13 N -0.830 5.830 14 Si 0.979 3.021 15 H -0.259 1.259 16 H -0.280 1.280 17 H -0.262 1.262 18 C -0.118 4.118 19 C 0.191 3.809 20 H 0.078 0.922 21 C -0.135 4.135 22 O -0.384 6.384 23 C 0.032 3.968 24 H 0.011 0.989 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.269 0.731 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.017 0.983 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.297 -2.771 17.429 17.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C 0.047 3.953 4 C -0.164 4.164 5 C -0.197 4.197 6 N -0.139 5.139 7 N -0.135 5.135 8 N -0.162 5.162 9 C -0.005 4.005 10 C -0.496 4.496 11 H 0.109 0.891 12 C -0.195 4.195 13 N -0.459 5.459 14 Si 0.801 3.199 15 H -0.184 1.184 16 H -0.205 1.205 17 H -0.187 1.187 18 C -0.253 4.253 19 C 0.131 3.869 20 H 0.096 0.904 21 C -0.193 4.193 22 O -0.302 6.302 23 C -0.065 4.065 24 H 0.030 0.970 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.136 0.864 29 H 0.129 0.871 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.036 0.964 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.507 -3.746 16.262 16.695 hybrid contribution -0.737 0.793 -0.555 1.217 sum -0.230 -2.953 15.707 15.984 Atomic orbital electron populations 1.21720 0.95693 1.02458 1.00398 1.21911 0.96299 0.94315 1.03752 1.21758 0.96592 0.94654 0.82271 1.21792 0.92879 1.01397 1.00345 1.21751 1.02167 1.01819 0.93939 1.49973 1.36235 1.20290 1.07404 1.81290 1.24965 1.22839 0.84421 1.75084 1.12044 1.04960 1.24075 1.19430 0.97361 0.95588 0.88076 1.18906 1.28801 1.10229 0.91703 0.89106 1.26737 0.95740 0.98976 0.98054 1.70196 1.35758 1.34703 1.05245 0.85321 0.79195 0.78647 0.76773 1.18378 1.20464 1.18673 1.22586 1.08481 0.96546 0.97654 1.20046 0.81529 0.94824 0.90541 0.90440 1.21768 0.99264 0.95766 1.02528 1.87999 1.15636 1.45266 1.81280 1.22848 0.93580 0.91194 0.98855 0.96977 0.90822 0.91139 0.93163 0.86414 0.87059 0.92784 0.93139 0.90858 0.90915 0.91437 0.92113 0.93464 0.89374 0.91197 0.89019 0.96384 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.73 71.98 0.70 -3.20 16 2 C -0.12 -3.25 5.42 30.60 0.17 -3.08 16 3 C 0.15 4.41 2.54 44.99 0.11 4.53 16 4 C -0.13 -3.34 5.67 30.59 0.17 -3.17 16 5 C -0.14 -2.30 9.53 71.98 0.69 -1.61 16 6 N -0.34 -14.73 2.82 -311.29 -0.88 -15.61 16 7 N -0.16 -8.60 13.62 37.02 0.50 -8.10 16 8 N -0.29 -18.05 10.56 -52.51 -0.55 -18.60 16 9 C 0.13 7.37 6.69 39.67 0.27 7.63 16 10 C -0.46 -26.63 8.69 23.44 0.20 -26.42 16 11 H 0.09 5.02 6.59 -2.91 -0.02 5.01 16 12 C 0.02 1.01 5.49 85.18 0.47 1.48 16 13 N -0.83 -50.89 11.92 21.80 0.26 -50.63 16 14 Si 0.98 43.33 29.56 68.60 2.03 45.36 16 15 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 16 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 17 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 18 C -0.12 -5.44 6.04 42.25 0.26 -5.19 16 19 C 0.19 6.86 2.88 29.85 0.09 6.94 16 20 H 0.08 2.22 6.30 -2.39 -0.02 2.20 16 21 C -0.14 -4.39 9.54 71.98 0.69 -3.70 16 22 O -0.38 -14.68 8.79 -148.98 -1.31 -15.99 16 23 C 0.03 0.95 10.81 113.37 1.23 2.17 16 24 H 0.01 0.41 7.90 -2.39 -0.02 0.39 16 25 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.12 2.06 6.52 -2.39 -0.02 2.04 16 29 H 0.11 2.71 6.52 -2.38 -0.02 2.70 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 1.01 6.79 -2.38 -0.02 0.99 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.27 15.33 8.30 -92.71 -0.77 14.56 16 36 H 0.05 1.83 7.87 -2.39 -0.02 1.81 16 37 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 41 H 0.07 1.48 8.09 -2.38 -0.02 1.46 16 Total: -1.00 -76.97 336.03 6.08 -70.89 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 1.00 Total: 16.30 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 5.03 Total: -23.62 kcal Atomic # 7 Polarization: -92.27 SS G_CDS: -0.67 Total: -92.94 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -1.31 Total: -15.99 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -76.97 6.08 -70.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.159 kcal (2) G-P(sol) polarization free energy of solvation -76.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds