Wall clock time and date at job start Mon Mar 30 2020 06:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46590 * 2 1 4 4 C 1.53005 * 109.46689 * 175.47306 * 3 2 1 5 5 C 1.53007 * 109.47122 * 294.45259 * 4 3 2 6 6 N 1.46501 * 109.47546 * 295.47256 * 3 2 1 7 7 N 1.40122 * 126.49017 * 300.03128 * 6 3 2 8 8 N 1.28668 * 108.93573 * 179.97438 * 7 6 3 9 9 C 1.34848 * 109.63370 * 359.72313 * 8 7 6 10 10 C 1.41493 * 126.02238 * 180.28114 * 9 8 7 11 11 H 1.07995 * 119.99758 * 180.19498 * 10 9 8 12 12 C 1.39739 * 119.99783 * 0.18894 * 10 9 8 13 13 N 1.30977 * 120.00100 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99550 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47453 * 59.99961 * 14 12 10 16 16 H 1.48500 * 109.46890 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47194 * 299.99713 * 14 12 10 18 18 C 1.35016 * 126.49363 * 119.99697 * 6 3 2 19 19 C 1.50699 * 126.76967 * 0.03051 * 18 6 3 20 20 H 1.08998 * 109.47662 * 14.99512 * 19 18 6 21 21 C 1.53002 * 109.47081 * 254.99084 * 19 18 6 22 22 O 1.42907 * 109.47202 * 134.99894 * 19 18 6 23 23 C 1.42900 * 113.99517 * 269.99744 * 22 19 18 24 24 H 1.09002 * 109.47111 * 185.22252 * 1 2 3 25 25 H 1.08995 * 109.47578 * 305.22533 * 1 2 3 26 26 H 1.09006 * 109.47091 * 65.22776 * 1 2 3 27 27 H 1.08995 * 109.47439 * 240.00507 * 2 1 3 28 28 H 1.09002 * 109.46901 * 119.99740 * 2 1 3 29 29 H 1.09005 * 109.47210 * 55.47333 * 3 2 1 30 30 H 1.08988 * 109.47251 * 54.45676 * 4 3 2 31 31 H 1.09008 * 109.46713 * 174.45699 * 4 3 2 32 32 H 1.08999 * 109.46966 * 305.99243 * 5 4 3 33 33 H 1.09000 * 109.46613 * 65.98733 * 5 4 3 34 34 H 1.09000 * 109.46776 * 185.98913 * 5 4 3 35 35 H 0.97000 * 120.00374 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.47222 * 300.00697 * 21 19 18 37 37 H 1.09002 * 109.46967 * 60.00559 * 21 19 18 38 38 H 1.08998 * 109.47086 * 180.02562 * 21 19 18 39 39 H 1.09006 * 109.47296 * 300.00003 * 23 22 19 40 40 H 1.09001 * 109.47283 * 179.97438 * 23 22 19 41 41 H 1.08999 * 109.47550 * 59.99805 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5657 1.4441 0.1139 5 6 3.9760 0.8822 1.4766 6 7 1.6426 2.1010 -1.2469 7 7 1.9934 1.7079 -2.5453 8 7 1.4616 2.5234 -3.3865 9 6 0.7530 3.4599 -2.7237 10 6 0.0235 4.5211 -3.3100 11 1 -0.5092 5.2210 -2.6834 12 6 -0.0073 4.6636 -4.6997 13 7 0.6394 3.8152 -5.4596 14 14 -0.9699 6.0651 -5.4736 15 1 -0.4299 7.3618 -4.9920 16 1 -0.8447 5.9946 -6.9517 17 1 -2.4007 5.9525 -5.0927 18 6 0.8686 3.2012 -1.3627 19 6 0.2472 3.9894 -0.2386 20 1 0.7185 3.7114 0.7040 21 6 -1.2506 3.6848 -0.1693 22 8 0.4387 5.3860 -0.4734 23 6 1.6449 5.9092 0.0863 24 1 -0.3633 -1.0234 0.0935 25 1 -0.3634 0.5927 0.8394 26 1 -0.3633 0.4306 -0.9332 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6118 1.9793 0.8467 30 1 3.9897 0.8253 -0.6769 31 1 3.9364 2.4644 0.0150 32 1 3.4670 1.4354 2.2659 33 1 3.6988 -0.1704 1.5339 34 1 5.0544 0.9813 1.6006 35 1 0.6176 3.9138 -6.4243 36 1 -1.7219 3.9628 -1.1120 37 1 -1.3968 2.6196 0.0097 38 1 -1.7002 4.2552 0.6434 39 1 1.6379 5.7626 1.1664 40 1 1.7165 6.9740 -0.1357 41 1 2.5008 5.3902 -0.3451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545042.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:16 Heat of formation + Delta-G solvation = 26.523586 kcal Electronic energy + Delta-G solvation = -21929.224219 eV Core-core repulsion = 18845.963440 eV Total energy + Delta-G solvation = -3083.260780 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.12685 -37.23247 -36.58896 -33.19883 -32.05798 -31.53783 -30.51928 -28.49140 -26.20267 -25.86672 -24.76791 -22.67191 -22.49008 -21.62970 -19.41191 -18.93252 -16.94802 -16.00162 -15.77595 -14.87775 -14.67634 -14.51679 -14.37529 -14.21374 -13.75366 -13.14153 -12.92110 -12.68170 -12.39941 -12.08257 -11.97326 -11.77480 -11.63447 -11.35066 -11.14730 -11.08827 -11.04947 -10.84523 -10.78400 -10.66260 -10.45845 -10.27899 -10.06166 -9.65988 -9.16522 -9.09418 -8.67500 -8.35575 -7.31902 -6.27152 -4.02802 2.86643 3.25587 3.27047 3.30484 3.60848 4.23306 4.38890 4.48626 4.77811 5.05025 5.15545 5.30929 5.41357 5.47347 5.48894 5.60361 5.64494 5.73767 5.75596 5.82717 5.87979 5.90094 5.97876 6.05286 6.12838 6.13013 6.20874 6.29679 6.36823 6.38340 6.47485 6.52000 6.84456 7.03653 7.26214 7.37599 7.62206 7.94616 8.25749 8.67435 8.95060 9.22537 10.31131 10.69567 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.020241 B = 0.007050 C = 0.006347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.970582 B = 3970.419900 C = 4410.326825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C 0.167 3.833 4 C -0.131 4.131 5 C -0.148 4.148 6 N -0.366 5.366 7 N -0.123 5.123 8 N -0.235 5.235 9 C 0.173 3.827 10 C -0.434 4.434 11 H 0.090 0.910 12 C 0.070 3.930 13 N -0.779 5.779 14 Si 0.905 3.095 15 H -0.269 1.269 16 H -0.283 1.283 17 H -0.269 1.269 18 C -0.155 4.155 19 C 0.195 3.805 20 H 0.040 0.960 21 C -0.140 4.140 22 O -0.362 6.362 23 C 0.038 3.962 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.270 0.730 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.027 0.973 40 H 0.078 0.922 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.170 -2.340 13.430 13.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C 0.062 3.938 4 C -0.170 4.170 5 C -0.206 4.206 6 N -0.164 5.164 7 N -0.099 5.099 8 N -0.108 5.108 9 C 0.044 3.956 10 C -0.470 4.470 11 H 0.108 0.892 12 C -0.148 4.148 13 N -0.406 5.406 14 Si 0.731 3.269 15 H -0.194 1.194 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.285 4.285 19 C 0.135 3.865 20 H 0.058 0.942 21 C -0.198 4.198 22 O -0.280 6.280 23 C -0.059 4.059 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.046 0.954 40 H 0.097 0.903 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.868 -3.304 12.228 12.803 hybrid contribution -0.610 1.204 0.412 1.411 sum 1.258 -2.101 12.640 12.875 Atomic orbital electron populations 1.21743 0.95498 1.01030 1.02413 1.21894 0.96609 0.95558 1.02739 1.21065 0.94810 0.93604 0.84272 1.21847 0.94747 1.02209 0.98158 1.21788 1.01170 1.01073 0.96556 1.49467 1.38719 1.21711 1.06525 1.81412 1.22978 1.22442 0.83092 1.75137 1.10078 1.03426 1.22123 1.18909 0.96028 0.94666 0.85968 1.18685 1.27834 1.09536 0.90922 0.89236 1.25836 0.94924 0.96360 0.97700 1.70023 1.33139 1.32173 1.05235 0.86443 0.80628 0.82091 0.77784 1.19353 1.20873 1.19384 1.21746 1.11450 0.97769 0.97546 1.19723 0.94839 0.80377 0.91570 0.94214 1.21806 0.94442 1.00513 1.03037 1.88015 1.39542 1.22539 1.77864 1.22607 0.88405 0.99252 0.95612 0.93008 0.93130 0.91996 0.90634 0.91036 0.89907 0.90637 0.91785 0.92808 0.92328 0.92527 0.91934 0.90388 0.92132 0.93042 0.95420 0.90313 0.94484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.73 37.16 0.36 -1.80 16 2 C -0.13 -1.85 5.42 -26.73 -0.14 -1.99 16 3 C 0.17 2.68 2.54 -67.93 -0.17 2.50 16 4 C -0.13 -1.88 5.67 -26.73 -0.15 -2.04 16 5 C -0.15 -1.55 9.53 37.16 0.35 -1.19 16 6 N -0.37 -7.86 2.81 -49.73 -0.14 -8.00 16 7 N -0.12 -3.15 13.62 60.35 0.82 -2.33 16 8 N -0.23 -6.84 10.56 32.05 0.34 -6.51 16 9 C 0.17 4.80 6.69 -85.01 -0.57 4.23 16 10 C -0.43 -12.07 8.65 -37.78 -0.33 -12.39 16 11 H 0.09 2.41 6.56 -52.49 -0.34 2.06 16 12 C 0.07 1.92 5.49 -17.36 -0.10 1.82 16 13 N -0.78 -22.50 11.92 55.54 0.66 -21.83 16 14 Si 0.90 20.34 29.56 -169.99 -5.02 15.32 16 15 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 C -0.15 -3.57 6.03 -80.90 -0.49 -4.06 16 19 C 0.19 3.74 2.87 -27.88 -0.08 3.66 16 20 H 0.04 0.67 6.30 -51.93 -0.33 0.34 16 21 C -0.14 -2.44 9.54 37.16 0.35 -2.08 16 22 O -0.36 -7.30 8.81 -35.23 -0.31 -7.61 16 23 C 0.04 0.63 10.81 101.05 1.09 1.72 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 1.12 7.89 -51.93 -0.41 0.72 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.07 0.80 6.52 -51.93 -0.34 0.47 16 29 H 0.08 1.21 6.52 -51.93 -0.34 0.88 16 30 H 0.07 1.18 8.14 -51.94 -0.42 0.76 16 31 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.55 6.78 -51.93 -0.35 0.20 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.27 7.22 8.30 -40.82 -0.34 6.88 16 36 H 0.08 1.54 7.79 -51.93 -0.40 1.13 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.03 0.37 8.09 -51.93 -0.42 -0.05 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 335.89 15.07 5.06 5.06 Total: -1.00 -32.00 335.89 -5.18 -37.17 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.72 Total: 0.36 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 0.13 Total: -11.63 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 1.68 Total: -38.68 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.31 Total: -7.61 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.00 -5.18 -37.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545042.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.694 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds