Wall clock time and date at job start Mon Mar 30 2020 06:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46590 * 2 1 4 4 C 1.53005 * 109.46689 * 175.47306 * 3 2 1 5 5 C 1.53007 * 109.47122 * 294.45259 * 4 3 2 6 6 N 1.46501 * 109.47546 * 295.47256 * 3 2 1 7 7 N 1.40122 * 126.49017 * 300.03128 * 6 3 2 8 8 N 1.28668 * 108.93573 * 179.97438 * 7 6 3 9 9 C 1.34848 * 109.63370 * 359.72313 * 8 7 6 10 10 C 1.41493 * 126.02238 * 180.28114 * 9 8 7 11 11 H 1.07995 * 119.99758 * 180.19498 * 10 9 8 12 12 C 1.39739 * 119.99783 * 0.18894 * 10 9 8 13 13 N 1.30977 * 120.00100 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99550 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47453 * 59.99961 * 14 12 10 16 16 H 1.48500 * 109.46890 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47194 * 299.99713 * 14 12 10 18 18 C 1.35016 * 126.49363 * 119.99697 * 6 3 2 19 19 C 1.50699 * 126.76967 * 0.03051 * 18 6 3 20 20 H 1.08998 * 109.47662 * 14.99512 * 19 18 6 21 21 C 1.53002 * 109.47081 * 254.99084 * 19 18 6 22 22 O 1.42907 * 109.47202 * 134.99894 * 19 18 6 23 23 C 1.42900 * 113.99517 * 269.99744 * 22 19 18 24 24 H 1.09002 * 109.47111 * 185.22252 * 1 2 3 25 25 H 1.08995 * 109.47578 * 305.22533 * 1 2 3 26 26 H 1.09006 * 109.47091 * 65.22776 * 1 2 3 27 27 H 1.08995 * 109.47439 * 240.00507 * 2 1 3 28 28 H 1.09002 * 109.46901 * 119.99740 * 2 1 3 29 29 H 1.09005 * 109.47210 * 55.47333 * 3 2 1 30 30 H 1.08988 * 109.47251 * 54.45676 * 4 3 2 31 31 H 1.09008 * 109.46713 * 174.45699 * 4 3 2 32 32 H 1.08999 * 109.46966 * 305.99243 * 5 4 3 33 33 H 1.09000 * 109.46613 * 65.98733 * 5 4 3 34 34 H 1.09000 * 109.46776 * 185.98913 * 5 4 3 35 35 H 0.97000 * 120.00374 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.47222 * 300.00697 * 21 19 18 37 37 H 1.09002 * 109.46967 * 60.00559 * 21 19 18 38 38 H 1.08998 * 109.47086 * 180.02562 * 21 19 18 39 39 H 1.09006 * 109.47296 * 300.00003 * 23 22 19 40 40 H 1.09001 * 109.47283 * 179.97438 * 23 22 19 41 41 H 1.08999 * 109.47550 * 59.99805 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5657 1.4441 0.1139 5 6 3.9760 0.8822 1.4766 6 7 1.6426 2.1010 -1.2469 7 7 1.9934 1.7079 -2.5453 8 7 1.4616 2.5234 -3.3865 9 6 0.7530 3.4599 -2.7237 10 6 0.0235 4.5211 -3.3100 11 1 -0.5092 5.2210 -2.6834 12 6 -0.0073 4.6636 -4.6997 13 7 0.6394 3.8152 -5.4596 14 14 -0.9699 6.0651 -5.4736 15 1 -0.4299 7.3618 -4.9920 16 1 -0.8447 5.9946 -6.9517 17 1 -2.4007 5.9525 -5.0927 18 6 0.8686 3.2012 -1.3627 19 6 0.2472 3.9894 -0.2386 20 1 0.7185 3.7114 0.7040 21 6 -1.2506 3.6848 -0.1693 22 8 0.4387 5.3860 -0.4734 23 6 1.6449 5.9092 0.0863 24 1 -0.3633 -1.0234 0.0935 25 1 -0.3634 0.5927 0.8394 26 1 -0.3633 0.4306 -0.9332 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6118 1.9793 0.8467 30 1 3.9897 0.8253 -0.6769 31 1 3.9364 2.4644 0.0150 32 1 3.4670 1.4354 2.2659 33 1 3.6988 -0.1704 1.5339 34 1 5.0544 0.9813 1.6006 35 1 0.6176 3.9138 -6.4243 36 1 -1.7219 3.9628 -1.1120 37 1 -1.3968 2.6196 0.0097 38 1 -1.7002 4.2552 0.6434 39 1 1.6379 5.7626 1.1664 40 1 1.7165 6.9740 -0.1357 41 1 2.5008 5.3902 -0.3451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545042.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:16 Heat of formation + Delta-G solvation = 5.196451 kcal Electronic energy + Delta-G solvation = -21930.149033 eV Core-core repulsion = 18845.963440 eV Total energy + Delta-G solvation = -3084.185594 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.97579 -38.76929 -37.97250 -35.15268 -33.61966 -32.70368 -32.18493 -30.33336 -27.62368 -27.21212 -26.56786 -24.18567 -23.78281 -23.19303 -21.18403 -20.55755 -18.71627 -17.59162 -17.39239 -16.61076 -16.32450 -15.90734 -15.72022 -15.57543 -15.05523 -14.76292 -14.49535 -14.17673 -13.59947 -13.40129 -13.23575 -13.14616 -12.93000 -12.86487 -12.77718 -12.73763 -12.42651 -12.32797 -12.19474 -12.05376 -11.89686 -11.65165 -11.57530 -11.51037 -11.07243 -10.79688 -10.44375 -10.17688 -9.30013 -8.25297 -6.09173 1.03374 1.42838 1.46608 1.55238 1.99010 2.36482 2.38960 3.04851 3.53157 3.61569 3.84912 3.86901 4.00533 4.11727 4.26361 4.37498 4.43460 4.45435 4.52219 4.53671 4.65025 4.70820 4.82892 4.86641 4.87068 4.96443 4.98277 5.10073 5.13224 5.15451 5.18160 5.27054 5.34787 5.39351 5.43567 5.59603 5.63745 6.41291 6.54683 6.59085 6.97843 7.18627 8.37207 8.74014 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.020241 B = 0.007050 C = 0.006347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.970582 B = 3970.419900 C = 4410.326825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C 0.149 3.851 4 C -0.126 4.126 5 C -0.139 4.139 6 N -0.343 5.343 7 N -0.159 5.159 8 N -0.292 5.292 9 C 0.128 3.872 10 C -0.460 4.460 11 H 0.091 0.909 12 C 0.018 3.982 13 N -0.830 5.830 14 Si 0.979 3.021 15 H -0.262 1.262 16 H -0.279 1.279 17 H -0.259 1.259 18 C -0.118 4.118 19 C 0.191 3.809 20 H 0.078 0.922 21 C -0.135 4.135 22 O -0.385 6.385 23 C 0.033 3.967 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.014 0.986 27 H 0.049 0.951 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.269 0.731 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.651 -2.059 17.493 17.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C 0.047 3.953 4 C -0.165 4.165 5 C -0.196 4.196 6 N -0.139 5.139 7 N -0.135 5.135 8 N -0.162 5.162 9 C -0.004 4.004 10 C -0.497 4.497 11 H 0.109 0.891 12 C -0.195 4.195 13 N -0.459 5.459 14 Si 0.801 3.199 15 H -0.187 1.187 16 H -0.205 1.205 17 H -0.184 1.184 18 C -0.253 4.253 19 C 0.131 3.869 20 H 0.095 0.905 21 C -0.193 4.193 22 O -0.303 6.303 23 C -0.063 4.063 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.033 0.967 27 H 0.068 0.932 28 H 0.135 0.865 29 H 0.130 0.870 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 1.393 -3.079 16.322 16.668 hybrid contribution -0.375 1.040 -0.541 1.231 sum 1.019 -2.038 15.781 15.945 Atomic orbital electron populations 1.21733 0.95476 1.02477 1.00748 1.21899 0.96513 0.94079 1.03690 1.21762 0.96399 0.94856 0.82266 1.21801 0.93092 1.01151 1.00426 1.21752 1.02132 1.01911 0.93850 1.49973 1.35957 1.20559 1.07416 1.81289 1.24702 1.23043 0.84474 1.75080 1.12076 1.04924 1.24080 1.19430 0.97477 0.95502 0.88039 1.18902 1.28879 1.10209 0.91661 0.89123 1.26734 0.95803 0.98909 0.98049 1.70188 1.35760 1.34685 1.05257 0.85320 0.79282 0.78573 0.76762 1.18664 1.20459 1.18380 1.22585 1.08270 0.96815 0.97624 1.20052 0.96003 0.79816 0.91076 0.90467 1.21783 0.92904 1.01845 1.02790 1.88000 1.40966 1.22524 1.78766 1.22819 0.86186 0.99706 0.97638 0.90925 0.90820 0.96696 0.93198 0.86487 0.87046 0.92765 0.93526 0.90874 0.90779 0.91478 0.92100 0.93530 0.90987 0.89422 0.91514 0.88863 0.96727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.73 71.98 0.70 -3.19 16 2 C -0.12 -3.20 5.42 30.60 0.17 -3.04 16 3 C 0.15 4.42 2.54 44.99 0.11 4.53 16 4 C -0.13 -3.39 5.67 30.60 0.17 -3.22 16 5 C -0.14 -2.31 9.53 71.98 0.69 -1.62 16 6 N -0.34 -14.75 2.81 -311.26 -0.88 -15.63 16 7 N -0.16 -8.61 13.62 37.02 0.50 -8.10 16 8 N -0.29 -18.05 10.56 -52.51 -0.55 -18.61 16 9 C 0.13 7.37 6.69 39.67 0.27 7.64 16 10 C -0.46 -26.64 8.65 23.44 0.20 -26.44 16 11 H 0.09 5.02 6.56 -2.91 -0.02 5.00 16 12 C 0.02 1.02 5.49 85.18 0.47 1.49 16 13 N -0.83 -50.88 11.92 21.79 0.26 -50.62 16 14 Si 0.98 43.32 29.56 68.60 2.03 45.35 16 15 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 16 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 18 C -0.12 -5.46 6.03 42.26 0.26 -5.21 16 19 C 0.19 6.86 2.87 29.85 0.09 6.95 16 20 H 0.08 2.22 6.30 -2.39 -0.02 2.20 16 21 C -0.14 -4.37 9.54 71.98 0.69 -3.69 16 22 O -0.39 -14.77 8.81 -148.98 -1.31 -16.09 16 23 C 0.03 0.99 10.81 113.37 1.23 2.22 16 24 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.01 0.51 7.89 -2.38 -0.02 0.49 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.12 2.04 6.52 -2.39 -0.02 2.02 16 29 H 0.11 2.72 6.52 -2.38 -0.02 2.70 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.03 6.78 -2.39 -0.02 1.01 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.27 15.33 8.30 -92.71 -0.77 14.56 16 36 H 0.05 1.81 7.79 -2.39 -0.02 1.79 16 37 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.07 1.50 8.09 -2.38 -0.02 1.48 16 40 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -77.07 335.89 6.08 -70.99 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 1.00 Total: 16.28 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 5.03 Total: -23.57 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -0.67 Total: -92.96 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -1.31 Total: -16.09 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -77.07 6.08 -70.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545042.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.189 kcal (2) G-P(sol) polarization free energy of solvation -77.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds