Wall clock time and date at job start Mon Mar 30 2020 06:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47480 * 2 1 4 4 C 1.52995 * 109.47106 * 180.02562 * 3 2 1 5 5 C 1.53009 * 109.46982 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47187 * 179.97438 * 5 4 3 7 7 N 1.40128 * 126.49137 * 90.02216 * 6 5 4 8 8 N 1.28674 * 108.93267 * 179.97438 * 7 6 5 9 9 C 1.34841 * 109.63425 * 0.02562 * 8 7 6 10 10 C 1.41491 * 126.01332 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99506 * 180.02562 * 10 9 8 12 12 C 1.39733 * 120.00597 * 0.02562 * 10 9 8 13 13 N 1.30988 * 120.00133 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00181 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46712 * 90.00496 * 14 12 10 16 16 H 1.48498 * 109.47089 * 210.00261 * 14 12 10 17 17 H 1.48496 * 109.47395 * 330.00492 * 14 12 10 18 18 C 1.35019 * 126.49264 * 270.02577 * 6 5 4 19 19 C 1.50697 * 126.77272 * 359.97438 * 18 6 5 20 20 H 1.09001 * 109.47344 * 345.02495 * 19 18 6 21 21 C 1.52998 * 109.47178 * 105.02639 * 19 18 6 22 22 O 1.42904 * 109.47211 * 225.02573 * 19 18 6 23 23 C 1.42893 * 114.00105 * 89.99798 * 22 19 18 24 24 H 1.09007 * 109.46919 * 59.99794 * 1 2 3 25 25 H 1.08993 * 109.47307 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47051 * 300.00522 * 1 2 3 27 27 H 1.09002 * 109.47051 * 239.99477 * 2 1 3 28 28 H 1.09007 * 109.46919 * 120.00206 * 2 1 3 29 29 H 1.08997 * 109.46968 * 59.99851 * 3 2 1 30 30 H 1.08995 * 109.46842 * 300.00260 * 3 2 1 31 31 H 1.08997 * 109.47332 * 60.00070 * 4 3 2 32 32 H 1.09002 * 109.47190 * 299.99603 * 4 3 2 33 33 H 1.08997 * 109.47034 * 59.99883 * 5 4 3 34 34 H 1.08995 * 109.46900 * 300.00216 * 5 4 3 35 35 H 0.97000 * 120.00361 * 179.97438 * 13 12 10 36 36 H 1.09001 * 109.47101 * 59.99707 * 21 19 18 37 37 H 1.08995 * 109.47261 * 179.97438 * 21 19 18 38 38 H 1.08999 * 109.47070 * 299.99980 * 21 19 18 39 39 H 1.08994 * 109.47408 * 180.02562 * 23 22 19 40 40 H 1.08998 * 109.47321 * 300.00815 * 23 22 19 41 41 H 1.09003 * 109.46825 * 60.00193 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 7 5.5451 2.8849 0.0000 7 7 6.3784 2.8858 -1.1265 8 7 7.6052 2.8860 -0.7384 9 6 7.6540 2.8847 0.6092 10 6 8.8279 2.8849 1.3991 11 1 8.7536 2.8834 2.4766 12 6 10.0832 2.8872 0.7853 13 7 10.1733 2.8897 -0.5214 14 14 11.6329 2.8869 1.8283 15 1 12.0449 1.4866 2.1021 16 1 12.7199 3.5893 1.1001 17 1 11.3659 3.5842 3.1119 18 6 6.3480 2.8839 1.0855 19 6 5.9141 2.8831 2.5286 20 1 4.8589 3.1491 2.5909 21 6 6.1249 1.4895 3.1238 22 8 6.6893 3.8355 3.2596 23 6 6.1206 5.1460 3.2916 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9329 0.9287 -0.8908 32 1 3.9337 0.9284 0.8892 33 1 3.7171 3.3982 0.8904 34 1 3.7164 3.3992 -0.8895 35 1 11.0447 2.8916 -0.9476 36 1 7.1801 1.2236 3.0615 37 1 5.8115 1.4891 4.1677 38 1 5.5336 0.7631 2.5663 39 1 6.7684 5.8094 3.8644 40 1 6.0222 5.5243 2.2741 41 1 5.1373 5.1040 3.7602 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:22 Heat of formation + Delta-G solvation = 19.789222 kcal Electronic energy + Delta-G solvation = -21083.998907 eV Core-core repulsion = 18000.446104 eV Total energy + Delta-G solvation = -3083.552803 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.03825 -37.23664 -36.35044 -33.79386 -32.90322 -31.57794 -29.98707 -28.52239 -26.21491 -25.88724 -24.82936 -22.57097 -22.29433 -21.05261 -20.17121 -18.95401 -17.11966 -15.99563 -15.77694 -15.47586 -14.72796 -14.64415 -14.27929 -14.01730 -13.92762 -13.64686 -12.95932 -12.82243 -12.63770 -12.15036 -11.98121 -11.78301 -11.63844 -11.21870 -11.17382 -11.11439 -11.09399 -10.95817 -10.83297 -10.71741 -10.57352 -10.36945 -10.10608 -9.67684 -9.19974 -9.13036 -8.69906 -8.40527 -7.35373 -6.28890 -4.05041 2.82305 3.22385 3.27048 3.32375 3.61254 4.22319 4.36751 4.47990 4.75776 4.82446 4.99913 5.09200 5.35773 5.38332 5.44985 5.54887 5.60110 5.63014 5.68620 5.74198 5.76677 5.82802 5.87366 5.91120 5.95310 6.05360 6.12723 6.13849 6.23839 6.29342 6.36912 6.43275 6.83095 7.01013 7.21967 7.32509 7.60354 7.93334 8.21412 8.66097 8.92494 9.20564 10.26810 10.67844 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.022895 B = 0.005245 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.661048 B = 5337.499214 C = 5854.588869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.134 4.134 5 C 0.138 3.862 6 N -0.375 5.375 7 N -0.126 5.126 8 N -0.233 5.233 9 C 0.173 3.827 10 C -0.433 4.433 11 H 0.091 0.909 12 C 0.070 3.930 13 N -0.779 5.779 14 Si 0.905 3.095 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.263 1.263 18 C -0.156 4.156 19 C 0.195 3.805 20 H 0.042 0.958 21 C -0.139 4.139 22 O -0.363 6.363 23 C 0.038 3.962 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.270 0.730 36 H 0.077 0.923 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.249 -1.742 5.601 15.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.154 4.154 4 C -0.174 4.174 5 C 0.014 3.986 6 N -0.173 5.173 7 N -0.103 5.103 8 N -0.106 5.106 9 C 0.044 3.956 10 C -0.469 4.469 11 H 0.109 0.891 12 C -0.149 4.149 13 N -0.405 5.405 14 Si 0.730 3.270 15 H -0.199 1.199 16 H -0.207 1.207 17 H -0.187 1.187 18 C -0.286 4.286 19 C 0.135 3.865 20 H 0.059 0.941 21 C -0.197 4.197 22 O -0.280 6.280 23 C -0.059 4.059 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -13.853 -1.762 3.954 14.513 hybrid contribution 0.304 0.175 1.282 1.329 sum -13.549 -1.587 5.236 14.612 Atomic orbital electron populations 1.21775 0.96045 1.01414 1.01683 1.21520 0.95561 0.96937 1.02231 1.21544 0.94827 0.96964 1.02038 1.22019 0.95068 0.96866 1.03397 1.21351 0.77429 0.97204 1.02593 1.49439 1.05228 1.56609 1.06049 1.81462 0.96229 1.24501 1.08111 1.75119 1.07303 1.15658 1.12483 1.18943 0.91103 0.97877 0.87723 1.18736 0.87693 1.46496 0.93963 0.89082 1.25852 1.00448 0.93651 0.94920 1.70037 1.25302 1.36027 1.09160 0.86377 0.81131 0.78760 0.80722 1.19913 1.20718 1.18737 1.21786 0.91992 1.25515 0.89295 1.19716 0.91696 0.89568 0.85486 0.94059 1.21783 1.04253 0.94526 0.99089 1.88014 1.49151 1.18303 1.72515 1.22612 0.97127 0.85763 1.00410 0.92821 0.92939 0.92836 0.91955 0.91988 0.91970 0.91822 0.91090 0.91451 0.90797 0.89954 0.91936 0.90408 0.92965 0.92247 0.90271 0.94470 0.95389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.86 16 2 C -0.12 -1.20 5.93 -26.73 -0.16 -1.36 16 3 C -0.12 -1.19 5.21 -26.73 -0.14 -1.33 16 4 C -0.13 -1.85 5.54 -26.73 -0.15 -1.99 16 5 C 0.14 2.20 6.26 -4.04 -0.03 2.17 16 6 N -0.38 -8.30 3.63 -56.18 -0.20 -8.51 16 7 N -0.13 -3.35 13.74 60.35 0.83 -2.52 16 8 N -0.23 -6.89 10.55 32.05 0.34 -6.55 16 9 C 0.17 4.83 6.69 -85.02 -0.57 4.27 16 10 C -0.43 -12.09 8.69 -37.78 -0.33 -12.42 16 11 H 0.09 2.45 6.58 -52.48 -0.35 2.11 16 12 C 0.07 1.91 5.49 -17.35 -0.10 1.81 16 13 N -0.78 -22.54 11.92 55.54 0.66 -21.88 16 14 Si 0.90 20.28 29.56 -169.99 -5.02 15.25 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 18 C -0.16 -3.64 6.04 -80.90 -0.49 -4.13 16 19 C 0.20 3.76 2.91 -27.89 -0.08 3.68 16 20 H 0.04 0.69 6.53 -51.93 -0.34 0.35 16 21 C -0.14 -2.41 9.54 37.16 0.35 -2.05 16 22 O -0.36 -7.31 8.79 -35.23 -0.31 -7.62 16 23 C 0.04 0.62 10.81 101.05 1.09 1.71 16 24 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 33 H 0.07 1.03 7.03 -51.93 -0.37 0.66 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.27 7.20 8.30 -40.82 -0.34 6.86 16 36 H 0.08 1.53 7.86 -51.93 -0.41 1.12 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.96 7.85 -51.93 -0.41 0.55 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.03 0.37 8.09 -51.93 -0.42 -0.05 16 LS Contribution 340.36 15.07 5.13 5.13 Total: -1.00 -32.69 340.36 -5.70 -38.39 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -6.90 Total: -1.20 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -0.22 Total: -10.51 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 1.63 Total: -39.45 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.31 Total: -7.62 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.69 -5.70 -38.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.182 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds