Wall clock time and date at job start Mon Mar 30 2020 06:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47480 * 2 1 4 4 C 1.52995 * 109.47106 * 180.02562 * 3 2 1 5 5 C 1.53009 * 109.46982 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47187 * 179.97438 * 5 4 3 7 7 N 1.40128 * 126.49137 * 90.02216 * 6 5 4 8 8 N 1.28674 * 108.93267 * 179.97438 * 7 6 5 9 9 C 1.34841 * 109.63425 * 0.02562 * 8 7 6 10 10 C 1.41491 * 126.01332 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99506 * 180.02562 * 10 9 8 12 12 C 1.39733 * 120.00597 * 0.02562 * 10 9 8 13 13 N 1.30988 * 120.00133 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00181 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46712 * 90.00496 * 14 12 10 16 16 H 1.48498 * 109.47089 * 210.00261 * 14 12 10 17 17 H 1.48496 * 109.47395 * 330.00492 * 14 12 10 18 18 C 1.35019 * 126.49264 * 270.02577 * 6 5 4 19 19 C 1.50697 * 126.77272 * 359.97438 * 18 6 5 20 20 H 1.09001 * 109.47344 * 345.02495 * 19 18 6 21 21 C 1.52998 * 109.47178 * 105.02639 * 19 18 6 22 22 O 1.42904 * 109.47211 * 225.02573 * 19 18 6 23 23 C 1.42893 * 114.00105 * 89.99798 * 22 19 18 24 24 H 1.09007 * 109.46919 * 59.99794 * 1 2 3 25 25 H 1.08993 * 109.47307 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47051 * 300.00522 * 1 2 3 27 27 H 1.09002 * 109.47051 * 239.99477 * 2 1 3 28 28 H 1.09007 * 109.46919 * 120.00206 * 2 1 3 29 29 H 1.08997 * 109.46968 * 59.99851 * 3 2 1 30 30 H 1.08995 * 109.46842 * 300.00260 * 3 2 1 31 31 H 1.08997 * 109.47332 * 60.00070 * 4 3 2 32 32 H 1.09002 * 109.47190 * 299.99603 * 4 3 2 33 33 H 1.08997 * 109.47034 * 59.99883 * 5 4 3 34 34 H 1.08995 * 109.46900 * 300.00216 * 5 4 3 35 35 H 0.97000 * 120.00361 * 179.97438 * 13 12 10 36 36 H 1.09001 * 109.47101 * 59.99707 * 21 19 18 37 37 H 1.08995 * 109.47261 * 179.97438 * 21 19 18 38 38 H 1.08999 * 109.47070 * 299.99980 * 21 19 18 39 39 H 1.08994 * 109.47408 * 180.02562 * 23 22 19 40 40 H 1.08998 * 109.47321 * 300.00815 * 23 22 19 41 41 H 1.09003 * 109.46825 * 60.00193 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 7 5.5451 2.8849 0.0000 7 7 6.3784 2.8858 -1.1265 8 7 7.6052 2.8860 -0.7384 9 6 7.6540 2.8847 0.6092 10 6 8.8279 2.8849 1.3991 11 1 8.7536 2.8834 2.4766 12 6 10.0832 2.8872 0.7853 13 7 10.1733 2.8897 -0.5214 14 14 11.6329 2.8869 1.8283 15 1 12.0449 1.4866 2.1021 16 1 12.7199 3.5893 1.1001 17 1 11.3659 3.5842 3.1119 18 6 6.3480 2.8839 1.0855 19 6 5.9141 2.8831 2.5286 20 1 4.8589 3.1491 2.5909 21 6 6.1249 1.4895 3.1238 22 8 6.6893 3.8355 3.2596 23 6 6.1206 5.1460 3.2916 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9329 0.9287 -0.8908 32 1 3.9337 0.9284 0.8892 33 1 3.7171 3.3982 0.8904 34 1 3.7164 3.3992 -0.8895 35 1 11.0447 2.8916 -0.9476 36 1 7.1801 1.2236 3.0615 37 1 5.8115 1.4891 4.1677 38 1 5.5336 0.7631 2.5663 39 1 6.7684 5.8094 3.8644 40 1 6.0222 5.5243 2.2741 41 1 5.1373 5.1040 3.7602 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:21 Heat of formation + Delta-G solvation = -1.723476 kcal Electronic energy + Delta-G solvation = -21084.931768 eV Core-core repulsion = 18000.446104 eV Total energy + Delta-G solvation = -3084.485664 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.93640 -38.77215 -37.43490 -35.44122 -34.57702 -33.09588 -31.34269 -30.36803 -27.58912 -27.21160 -26.58316 -24.18316 -23.51737 -22.05168 -21.90643 -20.64386 -19.00724 -17.44845 -17.30573 -16.67868 -16.50372 -16.23419 -15.82447 -15.51082 -15.02634 -14.69655 -14.38359 -14.16765 -14.09970 -13.38672 -13.29160 -13.09034 -12.94616 -12.84937 -12.76990 -12.73304 -12.34579 -12.14325 -12.05604 -11.89374 -11.81624 -11.71444 -11.56713 -11.40400 -11.11609 -10.84137 -10.45609 -10.25634 -9.35333 -8.26947 -6.11911 0.96586 1.43732 1.44572 1.58678 1.97486 2.35131 2.36780 3.05616 3.59341 3.74235 3.76484 3.97447 4.04414 4.13947 4.18591 4.38448 4.42221 4.45846 4.53993 4.54768 4.66524 4.79247 4.81300 4.87530 4.90212 4.96221 4.99075 5.03058 5.13347 5.18781 5.26833 5.31941 5.38730 5.43768 5.50149 5.50863 5.61201 6.38297 6.51433 6.57241 6.94302 7.16473 8.30701 8.72521 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.022895 B = 0.005245 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.661048 B = 5337.499214 C = 5854.588869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.106 4.106 4 C -0.124 4.124 5 C 0.122 3.878 6 N -0.356 5.356 7 N -0.168 5.168 8 N -0.289 5.289 9 C 0.126 3.874 10 C -0.458 4.458 11 H 0.093 0.907 12 C 0.018 3.982 13 N -0.830 5.830 14 Si 0.980 3.020 15 H -0.266 1.266 16 H -0.278 1.278 17 H -0.255 1.255 18 C -0.117 4.117 19 C 0.191 3.809 20 H 0.081 0.919 21 C -0.135 4.135 22 O -0.386 6.386 23 C 0.032 3.968 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.270 0.730 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.015 0.985 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.825 -1.620 8.288 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.144 4.144 4 C -0.163 4.163 5 C 0.001 3.999 6 N -0.152 5.152 7 N -0.144 5.144 8 N -0.158 5.158 9 C -0.006 4.006 10 C -0.495 4.495 11 H 0.111 0.889 12 C -0.195 4.195 13 N -0.459 5.459 14 Si 0.802 3.198 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.178 1.178 18 C -0.252 4.252 19 C 0.131 3.869 20 H 0.099 0.901 21 C -0.192 4.192 22 O -0.303 6.303 23 C -0.065 4.065 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.034 0.966 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.496 -1.639 6.595 17.841 hybrid contribution 0.795 0.163 0.529 0.969 sum -15.701 -1.476 7.124 17.305 Atomic orbital electron populations 1.21749 0.94631 1.02003 1.02263 1.21523 0.96772 0.96312 1.01802 1.21500 0.91673 0.97821 1.03410 1.21921 0.97683 0.94622 1.02081 1.21986 0.73592 0.99454 1.04910 1.49961 1.07544 1.52747 1.04943 1.81339 0.96109 1.27520 1.09426 1.75062 1.08874 1.18117 1.13780 1.19498 0.93228 1.00008 0.87848 1.18954 0.88587 1.47947 0.94024 0.88891 1.26766 1.03779 0.92971 0.96023 1.70196 1.25912 1.38594 1.11152 0.85238 0.76638 0.79023 0.78913 1.19114 1.20360 1.17816 1.22672 0.91020 1.19879 0.91662 1.20057 0.93479 0.90831 0.82504 0.90107 1.21765 1.02623 0.93393 1.01456 1.87998 1.50491 1.19782 1.72040 1.22835 0.99524 0.84270 0.99821 0.92542 0.92453 0.91937 0.92981 0.91991 0.89909 0.91109 0.93539 0.91758 0.87370 0.88759 0.92000 0.93474 0.89333 0.91148 0.88855 0.96591 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.25 16 2 C -0.13 -2.10 5.93 30.59 0.18 -1.92 16 3 C -0.11 -1.82 5.21 30.59 0.16 -1.66 16 4 C -0.12 -3.13 5.54 30.60 0.17 -2.96 16 5 C 0.12 3.56 6.26 86.38 0.54 4.10 16 6 N -0.36 -15.54 3.63 -331.64 -1.20 -16.75 16 7 N -0.17 -9.22 13.74 37.02 0.51 -8.72 16 8 N -0.29 -17.92 10.55 -52.52 -0.55 -18.48 16 9 C 0.13 7.30 6.69 39.67 0.27 7.56 16 10 C -0.46 -26.42 8.69 23.43 0.20 -26.22 16 11 H 0.09 5.11 6.58 -2.91 -0.02 5.09 16 12 C 0.02 1.00 5.49 85.18 0.47 1.46 16 13 N -0.83 -50.59 11.92 21.79 0.26 -50.33 16 14 Si 0.98 42.89 29.56 68.60 2.03 44.91 16 15 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 16 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.25 -10.60 7.11 99.48 0.71 -9.90 16 18 C -0.12 -5.43 6.04 42.25 0.26 -5.18 16 19 C 0.19 6.82 2.91 29.85 0.09 6.90 16 20 H 0.08 2.26 6.53 -2.39 -0.02 2.24 16 21 C -0.13 -4.30 9.54 71.98 0.69 -3.61 16 22 O -0.39 -14.63 8.79 -148.98 -1.31 -15.94 16 23 C 0.03 0.94 10.81 113.37 1.23 2.17 16 24 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.67 7.85 -2.39 -0.02 1.65 16 33 H 0.11 2.48 7.03 -2.39 -0.02 2.47 16 34 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.27 15.23 8.30 -92.71 -0.77 14.46 16 36 H 0.05 1.80 7.86 -2.39 -0.02 1.79 16 37 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.07 2.06 7.85 -2.39 -0.02 2.04 16 39 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.07 1.48 8.09 -2.39 -0.02 1.46 16 Total: -1.00 -76.50 340.36 5.68 -70.83 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.99 Total: 15.08 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: 4.96 Total: -20.61 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -0.99 Total: -94.27 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -1.31 Total: -15.94 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -76.50 5.68 -70.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.102 kcal (2) G-P(sol) polarization free energy of solvation -76.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds