Wall clock time and date at job start Mon Mar 30 2020 06:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 113.99920 * 2 1 4 4 C 1.53004 * 109.46993 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47206 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46885 * 55.00605 * 5 4 3 7 7 C 1.52995 * 109.47314 * 295.00515 * 5 4 3 8 8 N 1.46499 * 109.47034 * 175.00234 * 5 4 3 9 9 N 1.40122 * 126.49274 * 60.03031 * 8 5 4 10 10 N 1.28669 * 108.93534 * 179.97438 * 9 8 5 11 11 C 1.34844 * 109.63509 * 359.97438 * 10 9 8 12 12 C 1.41488 * 126.02145 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00479 * 179.74848 * 12 11 10 14 14 C 1.39745 * 120.00123 * 0.02562 * 12 11 10 15 15 N 1.30983 * 119.99866 * 359.72068 * 14 12 11 16 16 Si 1.86798 * 119.99961 * 179.72636 * 14 12 11 17 17 H 1.48493 * 109.47326 * 90.00156 * 16 14 12 18 18 H 1.48506 * 109.46545 * 209.99906 * 16 14 12 19 19 H 1.48498 * 109.47210 * 329.99617 * 16 14 12 20 20 C 1.35024 * 126.49116 * 240.31703 * 8 5 4 21 21 C 1.50698 * 126.77495 * 359.97438 * 20 8 5 22 22 C 1.52999 * 109.47402 * 120.19359 * 21 20 8 23 23 C 1.53002 * 109.47368 * 240.20096 * 21 20 8 24 24 H 1.09001 * 109.46657 * 60.00317 * 1 2 3 25 25 H 1.08995 * 109.47132 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47240 * 300.00287 * 1 2 3 27 27 H 1.08999 * 109.47433 * 59.99471 * 3 2 1 28 28 H 1.08998 * 109.46903 * 299.99595 * 3 2 1 29 29 H 1.09007 * 109.46636 * 60.00346 * 4 3 2 30 30 H 1.08993 * 109.47348 * 300.00306 * 4 3 2 31 31 H 1.09003 * 109.47640 * 59.99683 * 7 5 4 32 32 H 1.09003 * 109.47398 * 179.97438 * 7 5 4 33 33 H 1.09000 * 109.47218 * 299.99886 * 7 5 4 34 34 H 0.97000 * 120.00385 * 179.97438 * 15 14 12 35 35 H 1.09008 * 109.46787 * 0.19616 * 21 20 8 36 36 H 1.09004 * 109.46244 * 60.00189 * 22 21 20 37 37 H 1.08993 * 109.47274 * 180.02562 * 22 21 20 38 38 H 1.08998 * 109.47559 * 300.00342 * 22 21 20 39 39 H 1.09006 * 109.47090 * 59.99599 * 23 21 20 40 40 H 1.08993 * 109.47312 * 179.97438 * 23 21 20 41 41 H 1.09004 * 109.46535 * 299.99968 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 1 3.7669 3.1545 0.8414 7 6 3.8088 3.2954 -1.3078 8 7 5.6134 2.4688 0.1209 9 7 6.4743 1.8084 -0.7657 10 7 7.6819 1.9191 -0.3355 11 6 7.6912 2.6289 0.8110 12 6 8.8343 2.9561 1.5778 13 1 8.7297 3.5359 2.4829 14 6 10.0996 2.5340 1.1609 15 7 10.2266 1.8308 0.0632 16 14 11.6097 2.9725 2.1693 17 1 11.8595 1.9087 3.1748 18 1 12.7867 3.0914 1.2716 19 1 11.3833 4.2659 2.8627 20 6 6.3789 2.9762 1.1107 21 6 5.9049 3.7675 2.3024 22 6 6.2918 3.0342 3.5883 23 6 6.5576 5.1512 2.2882 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.8574 0.6435 -0.8892 30 1 3.8568 0.6438 0.8908 31 1 2.7258 3.3799 -1.3979 32 1 4.2518 4.2914 -1.3081 33 1 4.1997 2.7233 -2.1492 34 1 11.1049 1.5380 -0.2264 35 1 4.8212 3.8765 2.2584 36 1 7.3755 2.9252 3.6322 37 1 5.9486 3.6063 4.4502 38 1 5.8268 2.0485 3.5985 39 1 6.2818 5.6736 1.3721 40 1 6.2144 5.7237 3.1498 41 1 7.6413 5.0422 2.3321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:58 Heat of formation + Delta-G solvation = 24.199102 kcal Electronic energy + Delta-G solvation = -21098.248420 eV Core-core repulsion = 18014.886843 eV Total energy + Delta-G solvation = -3083.361577 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.11061 -38.13205 -35.65445 -34.82017 -33.12004 -30.69652 -28.65881 -28.52616 -26.45494 -26.39315 -25.16661 -23.98501 -21.73360 -21.66145 -19.44940 -18.52524 -17.16287 -16.27960 -16.19299 -15.61394 -14.86490 -14.81212 -14.16784 -14.10051 -13.68979 -13.45166 -13.02460 -12.81101 -12.49822 -12.14664 -11.88585 -11.73598 -11.46948 -11.42461 -11.32853 -11.13183 -11.08373 -10.94556 -10.82921 -10.68384 -10.50647 -10.15814 -9.79925 -9.73860 -9.55670 -9.22978 -8.74006 -8.37778 -7.30726 -6.30651 -4.09159 2.87576 3.19083 3.23711 3.25653 3.43599 3.85218 4.17646 4.38571 4.85975 4.99605 5.10004 5.18967 5.19402 5.29291 5.34479 5.40602 5.49698 5.54564 5.57099 5.62828 5.79356 5.92128 5.95315 6.08511 6.18118 6.24540 6.36044 6.40140 6.47967 6.57152 6.60187 6.81962 6.99716 7.05869 7.17942 7.22951 7.48502 7.63096 8.22590 8.49412 8.90612 9.15648 10.29785 10.66280 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.026495 B = 0.004952 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.529749 B = 5653.121495 C = 6035.502250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.065 3.935 4 C -0.125 4.125 5 C 0.169 3.831 6 H 0.089 0.911 7 C -0.160 4.160 8 N -0.372 5.372 9 N -0.131 5.131 10 N -0.230 5.230 11 C 0.157 3.843 12 C -0.450 4.450 13 H 0.086 0.914 14 C 0.073 3.927 15 N -0.777 5.777 16 Si 0.901 3.099 17 H -0.273 1.273 18 H -0.281 1.281 19 H -0.265 1.265 20 C -0.108 4.108 21 C 0.012 3.988 22 C -0.143 4.143 23 C -0.143 4.143 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.270 0.730 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.043 0.957 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.637 3.030 3.052 15.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.012 4.012 4 C -0.163 4.163 5 C 0.064 3.936 6 H 0.107 0.893 7 C -0.218 4.218 8 N -0.168 5.168 9 N -0.107 5.107 10 N -0.102 5.102 11 C 0.027 3.973 12 C -0.486 4.486 13 H 0.103 0.897 14 C -0.146 4.146 15 N -0.404 5.404 16 Si 0.727 3.273 17 H -0.199 1.199 18 H -0.206 1.206 19 H -0.189 1.189 20 C -0.239 4.239 21 C -0.009 4.009 22 C -0.201 4.201 23 C -0.201 4.201 24 H 0.058 0.942 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.261 1.913 1.548 14.472 hybrid contribution 0.268 0.969 1.325 1.663 sum -13.994 2.881 2.872 14.573 Atomic orbital electron populations 1.22725 0.81290 1.02635 0.99826 1.87908 1.19448 1.28163 1.95385 1.22566 0.93915 0.84563 1.00165 1.21818 0.92381 0.97235 1.04904 1.20745 0.78046 0.95698 0.99080 0.89350 1.22174 1.00870 1.01155 0.97567 1.49508 1.05471 1.42189 1.19626 1.81468 0.95234 1.18647 1.15315 1.75097 1.08466 1.15522 1.11073 1.18900 0.90738 0.95832 0.91795 1.18600 0.88866 1.32845 1.08301 0.89657 1.25779 1.00055 0.93978 0.94758 1.70019 1.24385 1.26899 1.19068 0.86439 0.81238 0.79557 0.80103 1.19884 1.20621 1.18928 1.21412 0.92215 1.13467 0.96786 1.19052 0.97152 0.93608 0.91087 1.21849 1.03940 0.99077 0.95258 1.21854 1.03355 0.95168 0.99733 0.94154 0.89742 0.94188 0.93337 0.92837 0.89745 0.90680 0.91698 0.92118 0.91063 0.91901 0.93195 0.90407 0.93843 0.93653 0.93701 0.93845 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -5.17 10.70 -35.23 -0.38 -5.55 16 3 C 0.06 0.78 5.69 37.16 0.21 0.99 16 4 C -0.12 -1.92 5.32 -26.73 -0.14 -2.06 16 5 C 0.17 2.75 3.16 -67.93 -0.21 2.53 16 6 H 0.09 1.27 6.41 -51.93 -0.33 0.94 16 7 C -0.16 -2.27 9.22 37.15 0.34 -1.92 16 8 N -0.37 -8.16 3.29 -49.74 -0.16 -8.32 16 9 N -0.13 -3.42 13.62 60.35 0.82 -2.60 16 10 N -0.23 -6.71 10.56 32.05 0.34 -6.37 16 11 C 0.16 4.28 6.60 -85.02 -0.56 3.72 16 12 C -0.45 -11.98 7.69 -37.78 -0.29 -12.27 16 13 H 0.09 2.09 4.66 -52.49 -0.24 1.84 16 14 C 0.07 1.94 5.49 -17.35 -0.10 1.84 16 15 N -0.78 -22.15 11.92 55.54 0.66 -21.49 16 16 Si 0.90 19.58 29.56 -169.99 -5.02 14.56 16 17 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 20 C -0.11 -2.47 5.80 -80.90 -0.47 -2.94 16 21 C 0.01 0.22 3.05 -91.77 -0.28 -0.06 16 22 C -0.14 -2.50 9.04 37.16 0.34 -2.16 16 23 C -0.14 -2.48 9.04 37.16 0.34 -2.14 16 24 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.56 6.56 -51.93 -0.34 0.22 16 29 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.06 0.69 6.56 -51.93 -0.34 0.35 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.27 7.12 8.30 -40.82 -0.34 6.78 16 35 H 0.05 0.81 6.46 -51.92 -0.34 0.47 16 36 H 0.08 1.51 5.76 -51.93 -0.30 1.21 16 37 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 1.51 5.73 -51.93 -0.30 1.21 16 LS Contribution 330.21 15.07 4.98 4.98 Total: -1.00 -32.02 330.21 -4.88 -36.90 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.40 Total: 0.97 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 0.29 Total: -13.08 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 1.66 Total: -38.78 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.38 Total: -5.55 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.02 -4.88 -36.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.100 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds