Wall clock time and date at job start Mon Mar 30 2020 06:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 113.99920 * 2 1 4 4 C 1.53004 * 109.46993 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47206 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46885 * 55.00605 * 5 4 3 7 7 C 1.52995 * 109.47314 * 295.00515 * 5 4 3 8 8 N 1.46499 * 109.47034 * 175.00234 * 5 4 3 9 9 N 1.40122 * 126.49274 * 60.03031 * 8 5 4 10 10 N 1.28669 * 108.93534 * 179.97438 * 9 8 5 11 11 C 1.34844 * 109.63509 * 359.97438 * 10 9 8 12 12 C 1.41488 * 126.02145 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00479 * 179.74848 * 12 11 10 14 14 C 1.39745 * 120.00123 * 0.02562 * 12 11 10 15 15 N 1.30983 * 119.99866 * 359.72068 * 14 12 11 16 16 Si 1.86798 * 119.99961 * 179.72636 * 14 12 11 17 17 H 1.48493 * 109.47326 * 90.00156 * 16 14 12 18 18 H 1.48506 * 109.46545 * 209.99906 * 16 14 12 19 19 H 1.48498 * 109.47210 * 329.99617 * 16 14 12 20 20 C 1.35024 * 126.49116 * 240.31703 * 8 5 4 21 21 C 1.50698 * 126.77495 * 359.97438 * 20 8 5 22 22 C 1.52999 * 109.47402 * 120.19359 * 21 20 8 23 23 C 1.53002 * 109.47368 * 240.20096 * 21 20 8 24 24 H 1.09001 * 109.46657 * 60.00317 * 1 2 3 25 25 H 1.08995 * 109.47132 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47240 * 300.00287 * 1 2 3 27 27 H 1.08999 * 109.47433 * 59.99471 * 3 2 1 28 28 H 1.08998 * 109.46903 * 299.99595 * 3 2 1 29 29 H 1.09007 * 109.46636 * 60.00346 * 4 3 2 30 30 H 1.08993 * 109.47348 * 300.00306 * 4 3 2 31 31 H 1.09003 * 109.47640 * 59.99683 * 7 5 4 32 32 H 1.09003 * 109.47398 * 179.97438 * 7 5 4 33 33 H 1.09000 * 109.47218 * 299.99886 * 7 5 4 34 34 H 0.97000 * 120.00385 * 179.97438 * 15 14 12 35 35 H 1.09008 * 109.46787 * 0.19616 * 21 20 8 36 36 H 1.09004 * 109.46244 * 60.00189 * 22 21 20 37 37 H 1.08993 * 109.47274 * 180.02562 * 22 21 20 38 38 H 1.08998 * 109.47559 * 300.00342 * 22 21 20 39 39 H 1.09006 * 109.47090 * 59.99599 * 23 21 20 40 40 H 1.08993 * 109.47312 * 179.97438 * 23 21 20 41 41 H 1.09004 * 109.46535 * 299.99968 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 1 3.7669 3.1545 0.8414 7 6 3.8088 3.2954 -1.3078 8 7 5.6134 2.4688 0.1209 9 7 6.4743 1.8084 -0.7657 10 7 7.6819 1.9191 -0.3355 11 6 7.6912 2.6289 0.8110 12 6 8.8343 2.9561 1.5778 13 1 8.7297 3.5359 2.4829 14 6 10.0996 2.5340 1.1609 15 7 10.2266 1.8308 0.0632 16 14 11.6097 2.9725 2.1693 17 1 11.8595 1.9087 3.1748 18 1 12.7867 3.0914 1.2716 19 1 11.3833 4.2659 2.8627 20 6 6.3789 2.9762 1.1107 21 6 5.9049 3.7675 2.3024 22 6 6.2918 3.0342 3.5883 23 6 6.5576 5.1512 2.2882 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.8574 0.6435 -0.8892 30 1 3.8568 0.6438 0.8908 31 1 2.7258 3.3799 -1.3979 32 1 4.2518 4.2914 -1.3081 33 1 4.1997 2.7233 -2.1492 34 1 11.1049 1.5380 -0.2264 35 1 4.8212 3.8765 2.2584 36 1 7.3755 2.9252 3.6322 37 1 5.9486 3.6063 4.4502 38 1 5.8268 2.0485 3.5985 39 1 6.2818 5.6736 1.3721 40 1 6.2144 5.7237 3.1498 41 1 7.6413 5.0422 2.3321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:57 Heat of formation + Delta-G solvation = 2.247458 kcal Electronic energy + Delta-G solvation = -21099.200315 eV Core-core repulsion = 18014.886843 eV Total energy + Delta-G solvation = -3084.313471 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.95426 -39.11812 -37.04172 -36.38392 -34.98303 -32.27763 -30.44645 -29.83320 -27.81101 -27.26302 -27.00546 -25.29344 -23.32312 -23.20540 -21.16184 -20.14987 -18.82906 -17.58157 -17.20504 -16.81098 -16.68222 -16.07666 -15.58770 -15.47027 -15.08763 -15.02928 -14.53114 -14.11256 -13.76596 -13.60775 -13.19929 -12.98470 -12.90651 -12.87040 -12.75080 -12.72462 -12.39368 -12.34239 -12.12360 -12.03051 -11.93381 -11.83140 -11.40067 -11.33998 -11.11364 -10.62062 -10.59170 -10.21863 -9.25766 -8.24010 -6.09912 1.06930 1.45228 1.46273 1.58568 1.94964 2.36553 2.40654 2.81858 3.60989 3.62138 3.86923 3.95073 4.05371 4.15423 4.17502 4.22275 4.39324 4.48990 4.55425 4.56296 4.65770 4.68104 4.80339 4.86878 4.88233 4.91813 4.98417 5.01881 5.09585 5.16835 5.19371 5.26712 5.36350 5.56689 5.59588 5.61490 5.84231 6.23270 6.48482 6.53756 6.98686 7.17322 8.37812 8.75842 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.026495 B = 0.004952 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.529749 B = 5653.121495 C = 6035.502250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.424 6.424 3 C 0.072 3.928 4 C -0.116 4.116 5 C 0.155 3.845 6 H 0.122 0.878 7 C -0.152 4.152 8 N -0.357 5.357 9 N -0.173 5.173 10 N -0.289 5.289 11 C 0.113 3.887 12 C -0.469 4.469 13 H 0.101 0.899 14 C 0.018 3.982 15 N -0.832 5.832 16 Si 0.977 3.023 17 H -0.269 1.269 18 H -0.283 1.283 19 H -0.248 1.248 20 C -0.077 4.077 21 C 0.007 3.993 22 C -0.139 4.139 23 C -0.138 4.138 24 H 0.054 0.946 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.112 0.888 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.269 0.731 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.037 0.963 39 H 0.040 0.960 40 H 0.084 0.916 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.532 5.162 5.306 19.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.344 6.344 3 C -0.005 4.005 4 C -0.155 4.155 5 C 0.053 3.947 6 H 0.140 0.860 7 C -0.210 4.210 8 N -0.151 5.151 9 N -0.147 5.147 10 N -0.157 5.157 11 C -0.020 4.020 12 C -0.506 4.506 13 H 0.119 0.881 14 C -0.195 4.195 15 N -0.461 5.461 16 Si 0.799 3.201 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.172 1.172 20 C -0.212 4.212 21 C -0.013 4.013 22 C -0.197 4.197 23 C -0.196 4.196 24 H 0.073 0.927 25 H 0.111 0.889 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.130 0.870 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.224 4.029 3.761 18.085 hybrid contribution 0.865 0.333 0.670 1.144 sum -16.359 4.362 4.431 17.500 Atomic orbital electron populations 1.22948 0.79015 1.03794 1.01279 1.87859 1.21951 1.28894 1.95701 1.22508 0.90818 0.84747 1.02379 1.21669 0.95500 0.95898 1.02450 1.21358 0.74640 0.97066 1.01682 0.86004 1.22144 1.03783 0.99866 0.95230 1.50035 1.07644 1.39371 1.18039 1.81347 0.95248 1.21169 1.16945 1.75051 1.10062 1.17766 1.12857 1.19500 0.92951 0.97300 0.92287 1.19001 0.89327 1.33333 1.08900 0.88126 1.26751 1.03410 0.93626 0.95713 1.70207 1.24844 1.29450 1.21602 0.85275 0.76716 0.79843 0.78223 1.19411 1.20800 1.17157 1.22320 0.91298 1.10496 0.97077 1.19376 0.99279 0.93546 0.89144 1.21802 1.02309 0.99367 0.96201 1.21800 1.01614 0.94686 1.01487 0.92695 0.88949 0.92623 0.90802 0.90696 0.92507 0.92964 0.86997 0.92601 0.93379 0.92176 0.89639 0.92933 0.89656 0.94362 0.94038 0.89704 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -10.35 10.70 -148.98 -1.59 -11.94 16 3 C 0.07 1.50 5.69 71.98 0.41 1.91 16 4 C -0.12 -3.46 5.32 30.60 0.16 -3.30 16 5 C 0.15 4.70 3.16 44.99 0.14 4.84 16 6 H 0.12 2.92 6.41 -2.39 -0.02 2.91 16 7 C -0.15 -3.98 9.22 71.98 0.66 -3.31 16 8 N -0.36 -15.66 3.29 -311.28 -1.02 -16.68 16 9 N -0.17 -9.46 13.62 37.02 0.50 -8.96 16 10 N -0.29 -17.82 10.56 -52.52 -0.55 -18.38 16 11 C 0.11 6.34 6.60 39.67 0.26 6.60 16 12 C -0.47 -25.70 7.69 23.44 0.18 -25.52 16 13 H 0.10 4.97 4.66 -2.91 -0.01 4.96 16 14 C 0.02 0.98 5.49 85.18 0.47 1.45 16 15 N -0.83 -50.28 11.92 21.80 0.26 -50.02 16 16 Si 0.98 41.36 29.56 68.60 2.03 43.38 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 18 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 20 C -0.08 -3.49 5.80 42.25 0.24 -3.24 16 21 C 0.01 0.24 3.05 -11.54 -0.04 0.21 16 22 C -0.14 -4.44 9.04 71.98 0.65 -3.79 16 23 C -0.14 -4.33 9.04 71.98 0.65 -3.68 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.08 1.24 6.56 -2.39 -0.02 1.22 16 29 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.11 1.88 6.56 -2.39 -0.02 1.86 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.27 15.09 8.30 -92.71 -0.77 14.32 16 35 H 0.09 2.30 6.46 -2.38 -0.02 2.28 16 36 H 0.05 1.96 5.76 -2.39 -0.01 1.95 16 37 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.05 1.91 5.73 -2.39 -0.01 1.90 16 Total: -1.00 -76.71 330.21 5.68 -71.02 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 1.02 Total: 17.77 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 5.05 Total: -26.19 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -0.81 Total: -94.04 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -1.59 Total: -11.94 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Total: -76.71 5.68 -71.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.272 kcal (2) G-P(sol) polarization free energy of solvation -76.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds