Wall clock time and date at job start Mon Mar 30 2020 06:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46795 * 2 1 4 4 H 1.08996 * 109.47030 * 54.48363 * 3 2 1 5 5 C 1.53001 * 109.46734 * 174.48016 * 3 2 1 6 6 O 1.42897 * 109.47444 * 296.50700 * 5 3 2 7 7 C 1.42900 * 114.00243 * 179.97438 * 6 5 3 8 8 N 1.46501 * 109.47398 * 294.47976 * 3 2 1 9 9 N 1.40119 * 126.49263 * 299.68939 * 8 3 2 10 10 N 1.28673 * 108.93691 * 179.87079 * 9 8 3 11 11 C 1.34842 * 109.62967 * 0.39432 * 10 9 8 12 12 C 1.41494 * 126.01954 * 179.78761 * 11 10 9 13 13 H 1.08000 * 119.99930 * 184.20442 * 12 11 10 14 14 C 1.39736 * 119.99955 * 4.19757 * 12 11 10 15 15 N 1.30984 * 120.00253 * 353.70990 * 14 12 11 16 16 Si 1.86801 * 120.00192 * 173.71335 * 14 12 11 17 17 H 1.48498 * 109.47098 * 94.97297 * 16 14 12 18 18 H 1.48496 * 109.47264 * 214.97670 * 16 14 12 19 19 H 1.48505 * 109.47094 * 334.98194 * 16 14 12 20 20 C 1.35020 * 126.48840 * 119.99863 * 8 3 2 21 21 C 1.50694 * 126.77428 * 359.97438 * 20 8 3 22 22 C 1.53001 * 109.46880 * 119.99893 * 21 20 8 23 23 C 1.52995 * 109.47189 * 239.99872 * 21 20 8 24 24 H 1.08992 * 109.46865 * 305.32229 * 1 2 3 25 25 H 1.08996 * 109.47267 * 65.32587 * 1 2 3 26 26 H 1.09001 * 109.46774 * 185.32363 * 1 2 3 27 27 H 1.09002 * 109.46980 * 240.00683 * 2 1 3 28 28 H 1.08992 * 109.47383 * 120.00080 * 2 1 3 29 29 H 1.09001 * 109.47521 * 56.51477 * 5 3 2 30 30 H 1.09007 * 109.46763 * 176.51059 * 5 3 2 31 31 H 1.08998 * 109.47341 * 300.00814 * 7 6 5 32 32 H 1.09002 * 109.46886 * 60.00832 * 7 6 5 33 33 H 1.09002 * 109.47125 * 180.02562 * 7 6 5 34 34 H 0.96995 * 120.00432 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.47091 * 0.02562 * 21 20 8 36 36 H 1.09000 * 109.46909 * 60.00316 * 22 21 20 37 37 H 1.09002 * 109.47159 * 179.97438 * 22 21 20 38 38 H 1.08996 * 109.47344 * 300.00134 * 22 21 20 39 39 H 1.09000 * 109.47174 * 60.00372 * 23 21 20 40 40 H 1.09002 * 109.47348 * 180.02562 * 23 21 20 41 41 H 1.09000 * 109.47471 * 300.00217 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5982 1.9841 0.8364 5 6 3.5637 1.4448 0.1388 6 8 3.9279 0.8832 1.4013 7 6 5.3373 0.8376 1.6323 8 7 1.6631 2.0938 -1.2570 9 7 2.0405 1.6972 -2.5468 10 7 1.5188 2.5052 -3.4016 11 6 0.8040 3.4485 -2.7555 12 6 0.0901 4.5105 -3.3593 13 1 -0.3957 5.2532 -2.7440 14 6 0.0139 4.5984 -4.7518 15 7 0.7030 3.7722 -5.4990 16 14 -1.0707 5.8943 -5.5480 17 1 -0.2548 7.0923 -5.8709 18 1 -1.6616 5.3469 -6.7955 19 1 -2.1578 6.2740 -4.6103 20 6 0.8912 3.1933 -1.3917 21 6 0.2506 3.9873 -0.2826 22 6 0.7649 5.4277 -0.3239 23 6 -1.2686 3.9828 -0.4638 24 1 -0.3633 0.5941 0.8384 25 1 -0.3633 0.4290 -0.9338 26 1 -0.3633 -1.0233 0.0954 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 4.0025 0.8512 -0.6632 30 1 3.9326 2.4686 0.0766 31 1 5.8125 0.2311 0.8613 32 1 5.7435 1.8487 1.6010 33 1 5.5311 0.3981 2.6108 34 1 0.6498 3.8329 -6.4656 35 1 0.5036 3.5389 0.6781 36 1 0.5123 5.8763 -1.2846 37 1 0.3013 6.0022 0.4781 38 1 1.8472 5.4309 -0.1948 39 1 -1.6350 2.9567 -0.4344 40 1 -1.7319 4.5575 0.3382 41 1 -1.5212 4.4315 -1.4246 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545771.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:24 Heat of formation + Delta-G solvation = 5.011472 kcal Electronic energy + Delta-G solvation = -21587.068225 eV Core-core repulsion = 18502.874610 eV Total energy + Delta-G solvation = -3084.193615 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.01201 -39.23082 -36.74926 -36.36349 -34.94666 -32.42482 -30.45689 -30.22040 -27.81018 -27.39940 -26.74676 -24.74953 -23.60823 -23.33124 -21.23226 -20.17294 -18.79661 -17.81372 -17.04262 -16.76087 -16.63361 -16.39786 -15.60875 -15.29898 -15.09775 -14.90254 -14.38424 -14.19862 -14.04578 -13.71755 -13.21928 -13.04393 -12.95664 -12.88150 -12.74449 -12.49363 -12.40773 -12.27731 -12.09817 -12.01787 -11.93071 -11.84677 -11.42105 -11.35246 -11.08867 -10.75954 -10.62050 -10.22290 -9.26023 -8.24891 -6.09266 1.04179 1.45227 1.46181 1.59185 1.78626 2.36410 2.40361 2.84509 3.49989 3.60531 3.81421 3.87650 4.03049 4.17841 4.27328 4.29746 4.40013 4.48376 4.52139 4.54267 4.56590 4.72364 4.78925 4.82878 4.90924 4.98134 4.98854 5.04073 5.13873 5.17476 5.24356 5.26599 5.37261 5.55371 5.59571 5.60595 5.83897 6.00405 6.46190 6.52627 6.98035 7.17555 8.36082 8.75116 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.023122 B = 0.005886 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.685067 B = 4756.185572 C = 4996.768508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C 0.159 3.841 4 H 0.117 0.883 5 C 0.070 3.930 6 O -0.393 6.393 7 C 0.025 3.975 8 N -0.351 5.351 9 N -0.170 5.170 10 N -0.284 5.284 11 C 0.115 3.885 12 C -0.468 4.468 13 H 0.100 0.900 14 C 0.020 3.980 15 N -0.830 5.830 16 Si 0.975 3.025 17 H -0.269 1.269 18 H -0.283 1.283 19 H -0.249 1.249 20 C -0.070 4.070 21 C 0.006 3.994 22 C -0.139 4.139 23 C -0.138 4.138 24 H 0.070 0.930 25 H 0.018 0.982 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.107 0.893 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.113 0.887 34 H 0.269 0.731 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.083 0.917 38 H 0.038 0.962 39 H 0.040 0.960 40 H 0.082 0.918 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.143 -1.355 15.642 15.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C 0.056 3.944 4 H 0.135 0.865 5 C -0.008 4.008 6 O -0.311 6.311 7 C -0.071 4.071 8 N -0.146 5.146 9 N -0.144 5.144 10 N -0.154 5.154 11 C -0.017 4.017 12 C -0.504 4.504 13 H 0.118 0.882 14 C -0.193 4.193 15 N -0.459 5.459 16 Si 0.797 3.203 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.172 1.172 20 C -0.205 4.205 21 C -0.015 4.015 22 C -0.197 4.197 23 C -0.195 4.195 24 H 0.089 0.911 25 H 0.037 0.963 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.126 0.874 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.131 0.869 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.101 0.899 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.928 -2.608 14.724 15.077 hybrid contribution -0.331 1.021 -0.716 1.290 sum 1.597 -1.588 14.007 14.187 Atomic orbital electron populations 1.21677 0.94985 1.02497 1.00816 1.21766 0.96763 0.93676 1.03326 1.21234 0.94478 0.95761 0.82896 0.86505 1.22467 0.94283 0.97601 0.86457 1.87751 1.25219 1.83199 1.34979 1.22996 0.79698 1.01301 1.03061 1.49762 1.36744 1.21105 1.07001 1.81358 1.25341 1.23529 0.84209 1.75054 1.11636 1.04921 1.23744 1.19445 0.98257 0.96037 0.87998 1.18974 1.31021 1.08914 0.91519 0.88192 1.26710 0.96231 0.98065 0.98286 1.70198 1.35189 1.34913 1.05602 0.85301 0.79011 0.78037 0.77966 1.19475 1.20824 1.17175 1.22214 1.06421 0.94782 0.97068 1.19363 0.95132 0.94284 0.92680 1.21812 0.99968 0.95060 1.02818 1.21784 0.93706 1.01292 1.02757 0.91083 0.96292 0.90861 0.93018 0.87429 0.93326 0.93722 0.93665 0.93548 0.86891 0.92150 0.90167 0.92747 0.89800 0.94249 0.94053 0.89894 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 9.74 71.98 0.70 -3.41 16 2 C -0.12 -3.46 5.51 30.60 0.17 -3.29 16 3 C 0.16 5.19 2.79 44.99 0.13 5.32 16 4 H 0.12 3.34 6.41 -2.39 -0.02 3.33 16 5 C 0.07 2.14 5.60 71.98 0.40 2.54 16 6 O -0.39 -9.94 10.08 -148.98 -1.50 -11.44 16 7 C 0.03 0.47 11.01 113.37 1.25 1.71 16 8 N -0.35 -15.22 2.86 -311.27 -0.89 -16.11 16 9 N -0.17 -9.06 13.62 37.02 0.50 -8.56 16 10 N -0.28 -17.15 10.57 -52.51 -0.56 -17.71 16 11 C 0.12 6.36 6.60 39.67 0.26 6.63 16 12 C -0.47 -25.21 7.67 23.43 0.18 -25.03 16 13 H 0.10 4.88 4.68 -2.91 -0.01 4.87 16 14 C 0.02 1.09 5.49 85.18 0.47 1.56 16 15 N -0.83 -49.30 11.95 21.79 0.26 -49.04 16 16 Si 0.97 40.83 29.56 68.60 2.03 42.86 16 17 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 18 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 20 C -0.07 -3.13 5.80 42.25 0.24 -2.89 16 21 C 0.01 0.21 3.05 -11.54 -0.04 0.18 16 22 C -0.14 -4.42 9.04 71.98 0.65 -3.77 16 23 C -0.14 -4.39 9.04 71.98 0.65 -3.74 16 24 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.02 0.68 7.92 -2.39 -0.02 0.66 16 26 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.11 2.60 7.63 -2.39 -0.02 2.58 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.11 1.47 8.14 -2.39 -0.02 1.46 16 34 H 0.27 14.84 8.30 -92.71 -0.77 14.07 16 35 H 0.08 2.30 6.46 -2.39 -0.02 2.29 16 36 H 0.05 2.00 5.66 -2.39 -0.01 1.99 16 37 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.05 1.99 5.83 -2.39 -0.01 1.97 16 Total: -1.00 -70.75 331.89 5.92 -64.83 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 1.01 Total: 19.36 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 5.07 Total: -24.18 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -0.68 Total: -91.42 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -1.50 Total: -11.44 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -70.75 5.92 -64.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545771.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.840 kcal (2) G-P(sol) polarization free energy of solvation -70.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds