Wall clock time and date at job start Mon Mar 30 2020 06:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 114.00105 * 2 1 4 4 H 1.09001 * 109.46902 * 329.99606 * 3 2 1 5 5 C 1.52998 * 109.46995 * 209.99844 * 3 2 1 6 6 C 1.50697 * 109.47211 * 89.99798 * 3 2 1 7 7 C 1.39012 * 126.77183 * 45.02549 * 6 3 2 8 8 C 1.41491 * 126.02504 * 359.97438 * 7 6 3 9 9 H 1.08004 * 119.99506 * 0.03116 * 8 7 6 10 10 C 1.39733 * 120.00597 * 180.02562 * 8 7 6 11 11 N 1.30988 * 120.00133 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00181 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46712 * 90.00496 * 12 10 8 14 14 H 1.48498 * 109.47089 * 210.00261 * 12 10 8 15 15 H 1.48496 * 109.47395 * 330.00492 * 12 10 8 16 16 N 1.34841 * 107.96164 * 180.02562 * 7 6 3 17 17 N 1.28674 * 109.63425 * 359.97438 * 16 7 6 18 18 N 1.35019 * 126.77272 * 225.02573 * 6 3 2 19 19 C 1.46497 * 126.49264 * 359.97438 * 18 6 3 20 20 C 1.53009 * 109.47187 * 270.02577 * 19 18 6 21 21 C 1.52995 * 109.46982 * 179.97438 * 20 19 18 22 22 C 1.52998 * 109.47064 * 175.00088 * 21 20 19 23 23 C 1.53002 * 109.47378 * 294.99964 * 21 20 19 24 24 H 1.08994 * 109.47408 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47321 * 300.00815 * 1 2 3 26 26 H 1.09003 * 109.46825 * 60.00193 * 1 2 3 27 27 H 1.09001 * 109.47101 * 299.99640 * 5 3 2 28 28 H 1.08995 * 109.47261 * 59.99932 * 5 3 2 29 29 H 1.08999 * 109.47070 * 179.97438 * 5 3 2 30 30 H 0.97000 * 120.00361 * 179.97438 * 11 10 8 31 31 H 1.08997 * 109.47085 * 30.02486 * 19 18 6 32 32 H 1.08995 * 109.47521 * 150.02564 * 19 18 6 33 33 H 1.08997 * 109.47034 * 299.99940 * 20 19 18 34 34 H 1.09002 * 109.46831 * 60.00004 * 20 19 18 35 35 H 1.09002 * 109.47211 * 55.00022 * 21 20 19 36 36 H 1.09002 * 109.47160 * 59.99903 * 22 21 20 37 37 H 1.09002 * 109.47245 * 179.97438 * 22 21 20 38 38 H 1.08997 * 109.47240 * 300.00137 * 22 21 20 39 39 H 1.09002 * 109.46997 * 300.00189 * 23 21 20 40 40 H 1.09005 * 109.47232 * 60.00140 * 23 21 20 41 41 H 1.09002 * 109.47343 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 3.3589 1.2632 -0.7212 6 6 2.2145 1.7644 1.4208 7 6 2.7451 1.0196 2.4677 8 6 3.1950 -0.3197 2.3918 9 1 3.1420 -0.8549 1.4551 10 6 3.7080 -0.9501 3.5285 11 7 3.7719 -0.3013 4.6646 12 14 4.3026 -2.7181 3.4279 13 1 5.7442 -2.7359 3.0718 14 1 4.1093 -3.3809 4.7426 15 1 3.5272 -3.4429 2.3894 16 7 2.7545 1.7979 3.5688 17 7 2.2744 2.9570 3.2830 18 7 1.9183 2.9802 1.9280 19 6 1.3352 4.1096 1.1996 20 6 2.4552 4.9665 0.6059 21 6 1.8462 6.1456 -0.1554 22 6 2.9637 7.0699 -0.6428 23 6 1.0557 5.6235 -1.3569 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 4.0241 0.5693 -0.2073 28 1 3.2111 0.9313 -1.7488 29 1 3.8020 2.2591 -0.7216 30 1 4.1277 -0.7389 5.4537 31 1 0.6998 3.7352 0.3970 32 1 0.7389 4.7139 1.8831 33 1 3.0905 5.3409 1.4085 34 1 3.0515 4.3621 -0.0777 35 1 1.1792 6.6992 0.5055 36 1 3.6307 6.5162 -1.3037 37 1 2.5299 7.9097 -1.1855 38 1 3.5269 7.4418 0.2131 39 1 1.7227 5.0699 -2.0177 40 1 0.2595 4.9651 -1.0096 41 1 0.6222 6.4637 -1.8995 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:33 Heat of formation + Delta-G solvation = 23.260173 kcal Electronic energy + Delta-G solvation = -21444.995433 eV Core-core repulsion = 18361.593141 eV Total energy + Delta-G solvation = -3083.402292 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.05060 -37.23584 -36.94513 -33.59678 -32.68975 -31.41227 -28.52758 -28.50708 -27.26113 -25.89301 -25.10138 -23.53960 -22.49912 -20.20884 -20.03295 -18.96640 -17.13747 -15.94443 -15.70263 -15.25093 -14.69661 -14.66028 -14.34422 -14.13879 -13.72412 -13.42778 -12.90645 -12.76921 -12.58677 -12.31141 -11.94838 -11.84107 -11.65064 -11.40969 -11.17044 -11.14210 -11.04584 -10.86549 -10.80930 -10.68930 -10.58142 -10.35327 -10.10125 -9.67360 -9.19525 -9.12528 -8.69467 -8.39625 -7.34957 -6.28570 -4.04689 2.82793 3.22581 3.27219 3.32535 3.61741 4.22545 4.37045 4.48060 4.80015 4.83927 4.89933 5.15229 5.41068 5.44612 5.54798 5.60125 5.61757 5.63966 5.68462 5.73548 5.74680 5.80624 5.86867 5.96605 6.00533 6.05535 6.12692 6.14444 6.27321 6.29852 6.37378 6.43179 6.83175 7.01372 7.22421 7.32939 7.60670 7.93505 8.21936 8.66386 8.92884 9.20906 10.27299 10.68169 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.022829 B = 0.005936 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.189008 B = 4715.464756 C = 5286.373461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.363 6.363 3 C 0.196 3.804 4 H 0.041 0.959 5 C -0.139 4.139 6 C -0.155 4.155 7 C 0.173 3.827 8 C -0.433 4.433 9 H 0.091 0.909 10 C 0.070 3.930 11 N -0.779 5.779 12 Si 0.905 3.095 13 H -0.274 1.274 14 H -0.282 1.282 15 H -0.263 1.263 16 N -0.233 5.233 17 N -0.127 5.127 18 N -0.375 5.375 19 C 0.137 3.863 20 C -0.129 4.129 21 C -0.094 4.094 22 C -0.146 4.146 23 C -0.151 4.151 24 H 0.079 0.921 25 H 0.037 0.963 26 H 0.028 0.972 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.270 0.730 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.533 7.801 -12.149 15.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.136 3.864 4 H 0.059 0.941 5 C -0.197 4.197 6 C -0.285 4.285 7 C 0.043 3.957 8 C -0.469 4.469 9 H 0.109 0.891 10 C -0.149 4.149 11 N -0.405 5.405 12 Si 0.730 3.270 13 H -0.199 1.199 14 H -0.207 1.207 15 H -0.187 1.187 16 N -0.106 5.106 17 N -0.103 5.103 18 N -0.173 5.173 19 C 0.013 3.987 20 C -0.168 4.168 21 C -0.113 4.113 22 C -0.203 4.203 23 C -0.208 4.208 24 H 0.097 0.903 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.317 8.407 -10.584 14.189 hybrid contribution -0.065 -0.993 -0.875 1.325 sum -4.383 7.413 -11.459 14.334 Atomic orbital electron populations 1.22612 0.82599 1.01896 0.98812 1.88014 1.18263 1.27244 1.94458 1.19712 0.94028 0.83694 0.89009 0.94072 1.21783 0.96663 1.02288 0.98920 1.21781 1.20123 0.88689 0.97945 1.18943 0.96604 0.94776 0.85330 1.18732 1.37069 0.94300 0.96769 0.89096 1.25852 0.94709 0.99227 0.95084 1.70038 1.33986 1.36495 1.00021 0.86378 0.79463 0.83022 0.78128 1.19922 1.20722 1.18749 1.75119 1.14617 0.96986 1.23863 1.81462 1.19819 1.18391 0.90673 1.49444 1.48627 1.09612 1.09596 1.21417 0.95237 0.86843 0.95173 1.22065 0.98355 0.96263 1.00131 1.21068 0.97278 0.96032 0.96907 1.21818 0.98353 0.98983 1.01151 1.21924 1.00116 1.00923 0.97840 0.90270 0.94472 0.95395 0.90399 0.92978 0.92263 0.91944 0.90590 0.90047 0.91074 0.91381 0.91069 0.92665 0.92837 0.92630 0.92513 0.92546 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.81 101.05 1.09 1.71 16 2 O -0.36 -7.30 8.79 -35.23 -0.31 -7.61 16 3 C 0.20 3.76 2.91 -27.89 -0.08 3.68 16 4 H 0.04 0.69 6.53 -51.93 -0.34 0.35 16 5 C -0.14 -2.41 9.54 37.16 0.35 -2.05 16 6 C -0.15 -3.62 6.04 -80.90 -0.49 -4.11 16 7 C 0.17 4.83 6.69 -85.02 -0.57 4.26 16 8 C -0.43 -12.08 8.68 -37.78 -0.33 -12.41 16 9 H 0.09 2.45 6.58 -52.48 -0.35 2.10 16 10 C 0.07 1.90 5.49 -17.35 -0.10 1.81 16 11 N -0.78 -22.54 11.92 55.54 0.66 -21.88 16 12 Si 0.90 20.28 29.56 -169.99 -5.02 15.25 16 13 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 16 N -0.23 -6.89 10.55 32.05 0.34 -6.56 16 17 N -0.13 -3.36 13.74 60.35 0.83 -2.53 16 18 N -0.37 -8.29 3.63 -56.18 -0.20 -8.49 16 19 C 0.14 2.19 6.02 -4.04 -0.02 2.17 16 20 C -0.13 -1.79 5.01 -26.73 -0.13 -1.92 16 21 C -0.09 -0.98 2.92 -90.62 -0.26 -1.24 16 22 C -0.15 -1.39 9.19 37.16 0.34 -1.05 16 23 C -0.15 -1.41 8.95 37.16 0.33 -1.08 16 24 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.03 0.37 8.09 -51.93 -0.42 -0.05 16 27 H 0.08 1.53 7.86 -51.93 -0.41 1.12 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.95 7.86 -51.93 -0.41 0.55 16 30 H 0.27 7.20 8.30 -40.82 -0.34 6.86 16 31 H 0.08 1.07 5.46 -51.93 -0.28 0.79 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 0.99 7.86 -51.93 -0.41 0.58 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 336.42 15.07 5.07 5.07 Total: -1.00 -32.66 336.42 -5.24 -37.90 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -6.74 Total: -0.91 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 0.14 Total: -10.24 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 1.63 Total: -39.46 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.31 Total: -7.61 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.66 -5.24 -37.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.155 kcal (2) G-P(sol) polarization free energy of solvation -32.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds