Wall clock time and date at job start Mon Mar 30 2020 06:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 114.00105 * 2 1 4 4 H 1.09001 * 109.46902 * 329.99606 * 3 2 1 5 5 C 1.52998 * 109.46995 * 209.99844 * 3 2 1 6 6 C 1.50697 * 109.47211 * 89.99798 * 3 2 1 7 7 C 1.39012 * 126.77183 * 45.02549 * 6 3 2 8 8 C 1.41491 * 126.02504 * 359.97438 * 7 6 3 9 9 H 1.08004 * 119.99506 * 0.03116 * 8 7 6 10 10 C 1.39733 * 120.00597 * 180.02562 * 8 7 6 11 11 N 1.30988 * 120.00133 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00181 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46712 * 90.00496 * 12 10 8 14 14 H 1.48498 * 109.47089 * 210.00261 * 12 10 8 15 15 H 1.48496 * 109.47395 * 330.00492 * 12 10 8 16 16 N 1.34841 * 107.96164 * 180.02562 * 7 6 3 17 17 N 1.28674 * 109.63425 * 359.97438 * 16 7 6 18 18 N 1.35019 * 126.77272 * 225.02573 * 6 3 2 19 19 C 1.46497 * 126.49264 * 359.97438 * 18 6 3 20 20 C 1.53009 * 109.47187 * 270.02577 * 19 18 6 21 21 C 1.52995 * 109.46982 * 179.97438 * 20 19 18 22 22 C 1.52998 * 109.47064 * 175.00088 * 21 20 19 23 23 C 1.53002 * 109.47378 * 294.99964 * 21 20 19 24 24 H 1.08994 * 109.47408 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47321 * 300.00815 * 1 2 3 26 26 H 1.09003 * 109.46825 * 60.00193 * 1 2 3 27 27 H 1.09001 * 109.47101 * 299.99640 * 5 3 2 28 28 H 1.08995 * 109.47261 * 59.99932 * 5 3 2 29 29 H 1.08999 * 109.47070 * 179.97438 * 5 3 2 30 30 H 0.97000 * 120.00361 * 179.97438 * 11 10 8 31 31 H 1.08997 * 109.47085 * 30.02486 * 19 18 6 32 32 H 1.08995 * 109.47521 * 150.02564 * 19 18 6 33 33 H 1.08997 * 109.47034 * 299.99940 * 20 19 18 34 34 H 1.09002 * 109.46831 * 60.00004 * 20 19 18 35 35 H 1.09002 * 109.47211 * 55.00022 * 21 20 19 36 36 H 1.09002 * 109.47160 * 59.99903 * 22 21 20 37 37 H 1.09002 * 109.47245 * 179.97438 * 22 21 20 38 38 H 1.08997 * 109.47240 * 300.00137 * 22 21 20 39 39 H 1.09002 * 109.46997 * 300.00189 * 23 21 20 40 40 H 1.09005 * 109.47232 * 60.00140 * 23 21 20 41 41 H 1.09002 * 109.47343 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 3.3589 1.2632 -0.7212 6 6 2.2145 1.7644 1.4208 7 6 2.7451 1.0196 2.4677 8 6 3.1950 -0.3197 2.3918 9 1 3.1420 -0.8549 1.4551 10 6 3.7080 -0.9501 3.5285 11 7 3.7719 -0.3013 4.6646 12 14 4.3026 -2.7181 3.4279 13 1 5.7442 -2.7359 3.0718 14 1 4.1093 -3.3809 4.7426 15 1 3.5272 -3.4429 2.3894 16 7 2.7545 1.7979 3.5688 17 7 2.2744 2.9570 3.2830 18 7 1.9183 2.9802 1.9280 19 6 1.3352 4.1096 1.1996 20 6 2.4552 4.9665 0.6059 21 6 1.8462 6.1456 -0.1554 22 6 2.9637 7.0699 -0.6428 23 6 1.0557 5.6235 -1.3569 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 4.0241 0.5693 -0.2073 28 1 3.2111 0.9313 -1.7488 29 1 3.8020 2.2591 -0.7216 30 1 4.1277 -0.7389 5.4537 31 1 0.6998 3.7352 0.3970 32 1 0.7389 4.7139 1.8831 33 1 3.0905 5.3409 1.4085 34 1 3.0515 4.3621 -0.0777 35 1 1.1792 6.6992 0.5055 36 1 3.6307 6.5162 -1.3037 37 1 2.5299 7.9097 -1.1855 38 1 3.5269 7.4418 0.2131 39 1 1.7227 5.0699 -2.0177 40 1 0.2595 4.9651 -1.0096 41 1 0.6222 6.4637 -1.8995 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:33 Heat of formation + Delta-G solvation = 1.528729 kcal Electronic energy + Delta-G solvation = -21445.937779 eV Core-core repulsion = 18361.593141 eV Total energy + Delta-G solvation = -3084.344638 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.94645 -38.77557 -38.01470 -35.41798 -34.39235 -32.98288 -30.37549 -29.94323 -27.99761 -27.23730 -26.97304 -24.97379 -24.12002 -22.12989 -20.97768 -20.63890 -19.02723 -17.45013 -17.33110 -16.61393 -16.38231 -16.07818 -15.83362 -15.53110 -14.99399 -14.71577 -14.35044 -14.20717 -13.90422 -13.32802 -13.27052 -13.14225 -12.91506 -12.89442 -12.79329 -12.73287 -12.42541 -12.32894 -12.05952 -11.92500 -11.80079 -11.59439 -11.54915 -11.49647 -11.11063 -10.83677 -10.45754 -10.24724 -9.35206 -8.26753 -6.11704 0.96639 1.43902 1.44731 1.58842 1.96994 2.35261 2.36932 3.05262 3.59542 3.71553 3.78921 3.94328 4.01773 4.07224 4.13923 4.34674 4.43913 4.51135 4.54470 4.66088 4.70619 4.75837 4.83485 4.87026 4.88333 4.95721 5.04381 5.08267 5.09448 5.13335 5.26688 5.29518 5.41927 5.43350 5.47671 5.54109 5.61349 6.38088 6.51166 6.57409 6.94466 7.16664 8.30788 8.72715 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.022829 B = 0.005936 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.189008 B = 4715.464756 C = 5286.373461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.192 3.808 4 H 0.080 0.920 5 C -0.135 4.135 6 C -0.117 4.117 7 C 0.127 3.873 8 C -0.458 4.458 9 H 0.093 0.907 10 C 0.018 3.982 11 N -0.830 5.830 12 Si 0.980 3.020 13 H -0.266 1.266 14 H -0.278 1.278 15 H -0.255 1.255 16 N -0.289 5.289 17 N -0.169 5.169 18 N -0.355 5.355 19 C 0.122 3.878 20 C -0.119 4.119 21 C -0.087 4.087 22 C -0.146 4.146 23 C -0.150 4.150 24 H 0.093 0.907 25 H 0.015 0.985 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.270 0.730 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.703 8.268 -15.654 18.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.132 3.868 4 H 0.098 0.902 5 C -0.192 4.192 6 C -0.252 4.252 7 C -0.005 4.005 8 C -0.494 4.494 9 H 0.111 0.889 10 C -0.195 4.195 11 N -0.459 5.459 12 Si 0.802 3.198 13 H -0.191 1.191 14 H -0.204 1.204 15 H -0.178 1.178 16 N -0.158 5.158 17 N -0.144 5.144 18 N -0.152 5.152 19 C 0.001 3.999 20 C -0.158 4.158 21 C -0.106 4.106 22 C -0.203 4.203 23 C -0.207 4.207 24 H 0.112 0.888 25 H 0.034 0.966 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.514 8.949 -14.084 17.574 hybrid contribution 0.147 -0.946 -0.001 0.958 sum -5.367 8.003 -14.084 17.065 Atomic orbital electron populations 1.22837 0.80723 1.03333 0.99577 1.87998 1.20436 1.27503 1.94339 1.20045 0.96022 0.84397 0.86350 0.90231 1.21765 0.94849 1.02323 1.00306 1.22662 1.15278 0.88048 0.99192 1.19496 0.98727 0.95813 0.86514 1.18947 1.38408 0.94885 0.97202 0.88899 1.26767 0.94617 1.03743 0.94417 1.70197 1.36220 1.38562 1.00884 0.85235 0.79068 0.77262 0.78220 1.19125 1.20367 1.17833 1.75062 1.16939 0.98179 1.25656 1.81341 1.22379 1.17931 0.92772 1.49959 1.45698 1.10691 1.08804 1.22025 0.96436 0.85609 0.95806 1.21979 0.97224 0.97120 0.99499 1.21036 0.97673 0.94599 0.97257 1.21818 0.98063 0.99380 1.01029 1.21931 0.99946 1.01679 0.97188 0.88818 0.96597 0.91452 0.93423 0.89327 0.91202 0.92005 0.87438 0.88942 0.93446 0.91760 0.90375 0.92683 0.90980 0.93438 0.92330 0.92312 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 10.81 113.37 1.23 2.16 16 2 O -0.39 -14.63 8.79 -148.98 -1.31 -15.94 16 3 C 0.19 6.86 2.91 29.85 0.09 6.94 16 4 H 0.08 2.25 6.53 -2.39 -0.02 2.23 16 5 C -0.13 -4.32 9.54 71.98 0.69 -3.63 16 6 C -0.12 -5.42 6.04 42.25 0.26 -5.16 16 7 C 0.13 7.32 6.69 39.67 0.27 7.58 16 8 C -0.46 -26.36 8.68 23.43 0.20 -26.16 16 9 H 0.09 5.10 6.58 -2.91 -0.02 5.08 16 10 C 0.02 0.99 5.49 85.18 0.47 1.46 16 11 N -0.83 -50.59 11.92 21.79 0.26 -50.33 16 12 Si 0.98 42.88 29.56 68.60 2.03 44.91 16 13 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 14 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 15 H -0.25 -10.61 7.11 99.48 0.71 -9.90 16 16 N -0.29 -17.94 10.55 -52.52 -0.55 -18.49 16 17 N -0.17 -9.26 13.74 37.02 0.51 -8.75 16 18 N -0.36 -15.59 3.63 -331.64 -1.20 -16.79 16 19 C 0.12 3.64 6.02 86.38 0.52 4.16 16 20 C -0.12 -3.07 5.01 30.60 0.15 -2.91 16 21 C -0.09 -1.54 2.92 -10.80 -0.03 -1.57 16 22 C -0.15 -2.38 9.19 71.98 0.66 -1.72 16 23 C -0.15 -2.15 8.95 71.98 0.64 -1.50 16 24 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 25 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.07 1.48 8.09 -2.39 -0.02 1.46 16 27 H 0.05 1.83 7.86 -2.39 -0.02 1.81 16 28 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.07 2.06 7.86 -2.39 -0.02 2.04 16 30 H 0.27 15.23 8.30 -92.71 -0.77 14.46 16 31 H 0.11 2.57 5.46 -2.39 -0.01 2.56 16 32 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.71 7.86 -2.39 -0.02 1.69 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 0.81 6.56 -2.38 -0.02 0.80 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -76.30 336.42 5.87 -70.44 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 1.00 Total: 15.31 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: 5.14 Total: -20.35 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -0.99 Total: -94.36 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -1.31 Total: -15.94 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -76.30 5.87 -70.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.968 kcal (2) G-P(sol) polarization free energy of solvation -76.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds