Wall clock time and date at job start Mon Mar 30 2020 06:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47257 * 2 1 4 4 C 1.53006 * 109.46937 * 240.00324 * 2 1 3 5 5 O 1.45196 * 109.47572 * 120.00294 * 2 1 3 6 6 C 1.34644 * 116.99750 * 59.99709 * 5 2 1 7 7 O 1.21503 * 119.99901 * 359.72883 * 6 5 2 8 8 N 1.34777 * 119.99831 * 179.97438 * 6 5 2 9 9 C 1.49193 * 129.44383 * 359.67435 * 8 6 5 10 10 C 1.56751 * 99.23622 * 179.79071 * 9 8 6 11 11 H 1.08999 * 119.00659 * 180.99590 * 10 9 8 12 12 C 1.55996 * 106.22146 * 41.50158 * 10 9 8 13 13 C 1.49813 * 129.44624 * 179.97438 * 8 6 5 14 14 H 1.09002 * 117.54424 * 358.81970 * 13 8 6 15 15 C 1.54875 * 103.53272 * 224.04455 * 13 8 6 16 16 H 1.09000 * 114.45371 * 181.57362 * 15 13 8 17 17 C 1.52997 * 114.45480 * 48.13049 * 15 13 8 18 18 C 1.50695 * 109.47498 * 84.50389 * 17 15 13 19 19 H 1.07999 * 119.99886 * 0.02562 * 18 17 15 20 20 C 1.37877 * 120.00219 * 180.02562 * 18 17 15 21 21 N 1.31514 * 120.00306 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00000 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46722 * 90.00500 * 22 20 18 24 24 H 1.48497 * 109.47597 * 210.00432 * 22 20 18 25 25 H 1.48496 * 109.47384 * 330.00849 * 22 20 18 26 26 H 1.09007 * 109.47040 * 299.99803 * 1 2 3 27 27 H 1.08994 * 109.47761 * 59.99432 * 1 2 3 28 28 H 1.09005 * 109.47416 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47592 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46949 * 300.00360 * 3 2 1 31 31 H 1.08999 * 109.47084 * 60.00407 * 3 2 1 32 32 H 1.08996 * 109.47190 * 300.00101 * 4 2 1 33 33 H 1.09003 * 109.47272 * 59.99639 * 4 2 1 34 34 H 1.08996 * 109.47211 * 180.02562 * 4 2 1 35 35 H 1.08997 * 111.44450 * 297.37223 * 9 8 6 36 36 H 1.09001 * 111.44518 * 62.35387 * 9 8 6 37 37 H 1.08994 * 114.53503 * 188.40599 * 12 10 9 38 38 H 1.09000 * 114.53698 * 54.69425 * 12 10 9 39 39 H 1.08998 * 109.47238 * 204.50752 * 17 15 13 40 40 H 1.09000 * 109.47082 * 324.50354 * 17 15 13 41 41 H 0.96993 * 120.00586 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9471 -2.5081 0.5062 8 7 2.0681 -2.6659 2.4164 9 6 2.9287 -2.2252 3.5527 10 6 2.9533 -3.5560 4.3806 11 1 3.5027 -3.5830 5.3216 12 6 3.1145 -4.7109 3.3444 13 6 1.7964 -4.0896 2.7954 14 1 1.1584 -4.6745 2.1329 15 6 1.4705 -4.0063 4.3072 16 1 1.2671 -4.9679 4.7785 17 6 0.4595 -2.9196 4.6782 18 6 -0.9388 -3.4495 4.4921 19 1 -1.0913 -4.4606 4.1444 20 6 -2.0236 -2.6437 4.7658 21 7 -3.2440 -3.1064 4.6039 22 14 -1.7600 -0.8952 5.3679 23 1 -1.6861 0.0234 4.2035 24 1 -2.8925 -0.4965 6.2418 25 1 -0.4919 -0.8224 6.1371 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7488 -1.2494 33 1 1.6765 -0.2074 -2.1393 34 1 3.1299 -0.7216 -1.2492 35 1 3.9264 -1.9475 3.2126 36 1 2.4628 -1.4159 4.1149 37 1 3.0036 -5.7118 3.7613 38 1 3.9739 -4.6080 2.6819 39 1 0.6028 -2.6302 5.7193 40 1 0.6074 -2.0512 4.0361 41 1 -4.0072 -2.5397 4.7967 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535953058.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:19 Heat of formation + Delta-G solvation = -14.296228 kcal Electronic energy + Delta-G solvation = -21911.491347 eV Core-core repulsion = 18794.167736 eV Total energy + Delta-G solvation = -3117.323611 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.18692 -39.85968 -36.36994 -33.92715 -32.90343 -31.92288 -29.68466 -27.69030 -27.31765 -27.18944 -24.32499 -23.76210 -21.01124 -20.84044 -19.07432 -18.68588 -17.60172 -16.72842 -16.18413 -15.87350 -14.95540 -14.52164 -14.46587 -14.04014 -13.61532 -13.51262 -13.30552 -12.54316 -12.41793 -12.40135 -12.10187 -12.07136 -11.76719 -11.64883 -11.46284 -11.33520 -11.09903 -11.07242 -10.96708 -10.79720 -10.41059 -10.12578 -10.05400 -9.73121 -9.64825 -9.14469 -9.06624 -8.47797 -8.18614 -5.98870 -3.95029 2.33982 3.30117 3.32817 3.39524 3.41737 4.12122 4.48954 4.56538 4.72998 4.84796 4.87750 4.97311 5.03565 5.12622 5.36831 5.50990 5.56436 5.62600 5.66098 5.74139 5.76484 5.86412 5.91601 5.97083 6.01344 6.02359 6.07693 6.21725 6.26000 6.38007 6.41781 6.53245 6.61571 6.71991 6.82721 7.23313 7.43648 7.84599 8.01477 8.58517 8.77165 9.06204 9.64178 11.14930 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.014802 B = 0.008483 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.150674 B = 3299.832854 C = 4378.617836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.181 4.181 5 O -0.365 6.365 6 C 0.680 3.320 7 O -0.566 6.566 8 N -0.594 5.594 9 C 0.121 3.879 10 C -0.146 4.146 11 H 0.113 0.887 12 C -0.144 4.144 13 C 0.136 3.864 14 H 0.123 0.877 15 C -0.099 4.099 16 H 0.102 0.898 17 C -0.008 4.008 18 C -0.510 4.510 19 H 0.071 0.929 20 C 0.067 3.933 21 N -0.904 5.904 22 Si 0.875 3.125 23 H -0.279 1.279 24 H -0.288 1.288 25 H -0.266 1.266 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.016 0.984 40 H 0.019 0.981 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.857 4.900 -6.180 16.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.238 4.238 5 O -0.281 6.281 6 C 0.435 3.565 7 O -0.455 6.455 8 N -0.335 5.335 9 C -0.001 4.001 10 C -0.165 4.165 11 H 0.131 0.869 12 C -0.182 4.182 13 C 0.034 3.966 14 H 0.141 0.859 15 C -0.118 4.118 16 H 0.121 0.879 17 C -0.045 4.045 18 C -0.548 4.548 19 H 0.089 0.911 20 C -0.134 4.134 21 N -0.543 5.543 22 Si 0.702 3.298 23 H -0.205 1.205 24 H -0.214 1.214 25 H -0.191 1.191 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.035 0.965 40 H 0.037 0.963 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.380 4.951 -6.605 16.581 hybrid contribution -0.148 1.100 0.305 1.151 sum 14.232 6.050 -6.300 16.698 Atomic orbital electron populations 1.22531 0.93859 1.05677 1.02213 1.21998 0.94576 0.91273 0.82245 1.21835 1.01846 0.92916 1.02972 1.22499 1.01100 1.03727 0.96465 1.86274 1.71666 1.23897 1.46213 1.17145 0.78497 0.80006 0.80813 1.90876 1.40800 1.70540 1.43284 1.47715 1.52628 1.12658 1.20451 1.22834 0.93646 0.97173 0.86464 1.24631 1.00399 0.93039 0.98408 0.86867 1.24228 0.97562 0.98152 0.98290 1.23474 0.96629 0.79816 0.96641 0.85932 1.23776 0.92421 1.01217 0.94384 0.87949 1.19548 0.94758 0.94247 0.95920 1.21043 0.88510 1.00988 1.44264 0.91104 1.24985 0.95173 0.97999 0.95201 1.69906 0.97887 1.36730 1.49795 0.86857 0.77889 0.85883 0.79146 1.20484 1.21438 1.19085 0.92094 0.91495 0.88903 0.91739 0.90365 0.91524 0.89288 0.91413 0.92513 0.91311 0.90066 0.87768 0.91821 0.96536 0.96305 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.02 8.37 37.15 0.31 -2.71 16 2 C 0.14 2.04 1.13 -90.62 -0.10 1.94 16 3 C -0.14 -1.57 8.85 37.16 0.33 -1.24 16 4 C -0.18 -2.45 8.37 37.16 0.31 -2.14 16 5 O -0.37 -6.59 9.69 -40.34 -0.39 -6.98 16 6 C 0.68 13.78 8.08 54.06 0.44 14.21 16 7 O -0.57 -12.62 12.42 -19.27 -0.24 -12.85 16 8 N -0.59 -11.20 2.35 -169.00 -0.40 -11.59 16 9 C 0.12 1.90 6.63 -0.52 0.00 1.89 16 10 C -0.15 -2.10 6.22 -92.08 -0.57 -2.67 16 11 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 12 C -0.14 -1.92 7.85 -30.29 -0.24 -2.16 16 13 C 0.14 2.45 6.14 -69.86 -0.43 2.02 16 14 H 0.12 2.37 8.14 -51.93 -0.42 1.95 16 15 C -0.10 -1.84 3.48 -95.11 -0.33 -2.18 16 16 H 0.10 1.84 7.86 -51.93 -0.41 1.43 16 17 C -0.01 -0.18 3.37 -27.89 -0.09 -0.27 16 18 C -0.51 -14.69 9.66 -34.44 -0.33 -15.02 16 19 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 20 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 21 N -0.90 -28.59 13.96 55.43 0.77 -27.82 16 22 Si 0.87 22.48 27.47 -169.99 -4.67 17.81 16 23 H -0.28 -7.19 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 26 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.09 1.82 5.87 -51.93 -0.30 1.52 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.45 5.89 -51.93 -0.31 1.14 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.35 7.09 -51.93 -0.37 0.99 16 37 H 0.10 1.20 7.86 -51.93 -0.41 0.79 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 40 H 0.02 0.46 5.09 -51.93 -0.26 0.20 16 41 H 0.26 7.77 8.31 -40.82 -0.34 7.44 16 LS Contribution 322.98 15.07 4.87 4.87 Total: -1.00 -33.67 322.98 -7.54 -41.21 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.67 Total: 1.78 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -0.81 Total: -6.41 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.38 Total: -39.41 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.63 Total: -19.84 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.67 Total: 17.81 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.67 -7.54 -41.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535953058.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.910 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds