Wall clock time and date at job start Mon Mar 30 2020 06:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47257 * 2 1 4 4 C 1.53006 * 109.46937 * 240.00324 * 2 1 3 5 5 O 1.45196 * 109.47572 * 120.00294 * 2 1 3 6 6 C 1.34644 * 116.99750 * 59.99709 * 5 2 1 7 7 O 1.21503 * 119.99901 * 359.72883 * 6 5 2 8 8 N 1.34777 * 119.99831 * 179.97438 * 6 5 2 9 9 C 1.49193 * 129.44383 * 359.67435 * 8 6 5 10 10 C 1.56751 * 99.23622 * 179.79071 * 9 8 6 11 11 H 1.08999 * 119.00659 * 180.99590 * 10 9 8 12 12 C 1.55996 * 106.22146 * 41.50158 * 10 9 8 13 13 C 1.49813 * 129.44624 * 179.97438 * 8 6 5 14 14 H 1.09002 * 117.54424 * 358.81970 * 13 8 6 15 15 C 1.54875 * 103.53272 * 224.04455 * 13 8 6 16 16 H 1.09000 * 114.45371 * 181.57362 * 15 13 8 17 17 C 1.52997 * 114.45480 * 48.13049 * 15 13 8 18 18 C 1.50695 * 109.47498 * 84.50389 * 17 15 13 19 19 H 1.07999 * 119.99886 * 0.02562 * 18 17 15 20 20 C 1.37877 * 120.00219 * 180.02562 * 18 17 15 21 21 N 1.31514 * 120.00306 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00000 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46722 * 90.00500 * 22 20 18 24 24 H 1.48497 * 109.47597 * 210.00432 * 22 20 18 25 25 H 1.48496 * 109.47384 * 330.00849 * 22 20 18 26 26 H 1.09007 * 109.47040 * 299.99803 * 1 2 3 27 27 H 1.08994 * 109.47761 * 59.99432 * 1 2 3 28 28 H 1.09005 * 109.47416 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47592 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46949 * 300.00360 * 3 2 1 31 31 H 1.08999 * 109.47084 * 60.00407 * 3 2 1 32 32 H 1.08996 * 109.47190 * 300.00101 * 4 2 1 33 33 H 1.09003 * 109.47272 * 59.99639 * 4 2 1 34 34 H 1.08996 * 109.47211 * 180.02562 * 4 2 1 35 35 H 1.08997 * 111.44450 * 297.37223 * 9 8 6 36 36 H 1.09001 * 111.44518 * 62.35387 * 9 8 6 37 37 H 1.08994 * 114.53503 * 188.40599 * 12 10 9 38 38 H 1.09000 * 114.53698 * 54.69425 * 12 10 9 39 39 H 1.08998 * 109.47238 * 204.50752 * 17 15 13 40 40 H 1.09000 * 109.47082 * 324.50354 * 17 15 13 41 41 H 0.96993 * 120.00586 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9471 -2.5081 0.5062 8 7 2.0681 -2.6659 2.4164 9 6 2.9287 -2.2252 3.5527 10 6 2.9533 -3.5560 4.3806 11 1 3.5027 -3.5830 5.3216 12 6 3.1145 -4.7109 3.3444 13 6 1.7964 -4.0896 2.7954 14 1 1.1584 -4.6745 2.1329 15 6 1.4705 -4.0063 4.3072 16 1 1.2671 -4.9679 4.7785 17 6 0.4595 -2.9196 4.6782 18 6 -0.9388 -3.4495 4.4921 19 1 -1.0913 -4.4606 4.1444 20 6 -2.0236 -2.6437 4.7658 21 7 -3.2440 -3.1064 4.6039 22 14 -1.7600 -0.8952 5.3679 23 1 -1.6861 0.0234 4.2035 24 1 -2.8925 -0.4965 6.2418 25 1 -0.4919 -0.8224 6.1371 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7488 -1.2494 33 1 1.6765 -0.2074 -2.1393 34 1 3.1299 -0.7216 -1.2492 35 1 3.9264 -1.9475 3.2126 36 1 2.4628 -1.4159 4.1149 37 1 3.0036 -5.7118 3.7613 38 1 3.9739 -4.6080 2.6819 39 1 0.6028 -2.6302 5.7193 40 1 0.6074 -2.0512 4.0361 41 1 -4.0072 -2.5397 4.7967 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535953058.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:19 Heat of formation + Delta-G solvation = -35.426016 kcal Electronic energy + Delta-G solvation = -21912.407603 eV Core-core repulsion = 18794.167736 eV Total energy + Delta-G solvation = -3118.239867 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.54485 -41.21964 -37.78414 -35.28160 -35.04247 -33.34111 -31.63838 -28.94546 -28.41530 -28.30391 -26.15962 -25.14162 -22.51912 -22.23928 -20.38817 -20.13645 -19.07461 -18.84389 -17.50249 -17.32985 -16.47918 -16.23391 -15.88033 -15.48695 -15.00517 -14.79687 -14.71984 -14.44812 -14.04933 -13.46038 -13.34844 -13.23300 -13.09358 -12.91042 -12.88399 -12.79875 -12.64482 -12.52846 -12.35844 -12.24531 -11.92849 -11.82957 -11.57463 -11.41454 -11.13201 -11.08322 -10.78407 -10.64620 -9.59295 -8.31443 -6.31968 1.00442 1.25992 1.27385 1.38539 1.79995 2.30353 2.86747 3.04427 3.36884 3.48495 3.69309 3.74018 3.75439 3.80638 3.91635 4.35935 4.40541 4.55441 4.56835 4.61143 4.71178 4.71977 4.75139 4.79178 4.84545 4.86678 4.90676 4.98508 5.07697 5.12476 5.13775 5.23519 5.25127 5.31970 5.34325 5.47663 5.62261 5.68421 6.27009 6.58616 6.75324 7.29364 7.30730 8.85999 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.014802 B = 0.008483 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.150674 B = 3299.832854 C = 4378.617836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.122 3.878 3 C -0.131 4.131 4 C -0.173 4.173 5 O -0.367 6.367 6 C 0.668 3.332 7 O -0.601 6.601 8 N -0.603 5.603 9 C 0.113 3.887 10 C -0.113 4.113 11 H 0.154 0.846 12 C -0.111 4.111 13 C 0.107 3.893 14 H 0.089 0.911 15 C -0.117 4.117 16 H 0.107 0.893 17 C -0.001 4.001 18 C -0.515 4.515 19 H 0.029 0.971 20 C 0.001 3.999 21 N -0.954 5.954 22 Si 0.941 3.059 23 H -0.283 1.283 24 H -0.280 1.280 25 H -0.238 1.238 26 H 0.044 0.956 27 H 0.099 0.901 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.128 0.872 38 H 0.084 0.916 39 H 0.023 0.977 40 H 0.009 0.991 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.375 6.687 -5.537 20.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.085 3.915 3 C -0.187 4.187 4 C -0.230 4.230 5 O -0.282 6.282 6 C 0.424 3.576 7 O -0.493 6.493 8 N -0.343 5.343 9 C -0.008 4.008 10 C -0.130 4.130 11 H 0.172 0.828 12 C -0.148 4.148 13 C 0.005 3.995 14 H 0.107 0.893 15 C -0.136 4.136 16 H 0.125 0.875 17 C -0.038 4.038 18 C -0.553 4.553 19 H 0.048 0.952 20 C -0.195 4.195 21 N -0.596 5.596 22 Si 0.765 3.235 23 H -0.209 1.209 24 H -0.206 1.206 25 H -0.161 1.161 26 H 0.064 0.936 27 H 0.117 0.883 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.088 0.912 37 H 0.146 0.854 38 H 0.102 0.898 39 H 0.041 0.959 40 H 0.028 0.972 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.939 6.737 -5.934 20.060 hybrid contribution -1.337 0.471 0.022 1.418 sum 16.602 7.208 -5.912 19.041 Atomic orbital electron populations 1.22504 0.95484 1.03077 1.03031 1.22474 0.93617 0.93383 0.81990 1.21863 1.02784 0.89897 1.04193 1.22420 1.01882 1.01818 0.96914 1.86282 1.71566 1.22680 1.47692 1.17471 0.78405 0.80678 0.81088 1.90857 1.42326 1.71400 1.44748 1.47945 1.52649 1.12994 1.20738 1.23125 0.94478 0.97636 0.85517 1.24640 0.96174 0.92323 0.99907 0.82836 1.24148 0.94796 0.98737 0.97165 1.23683 0.99966 0.80281 0.95563 0.89253 1.23860 0.94591 1.00039 0.95076 0.87524 1.19441 0.93021 0.95447 0.95901 1.21467 0.91629 0.99362 1.42855 0.95247 1.25972 0.94830 1.02945 0.95785 1.70071 0.99001 1.38678 1.51804 0.85788 0.79220 0.79722 0.78742 1.20875 1.20582 1.16122 0.93638 0.88253 0.93107 0.90227 0.87464 0.91975 0.92711 0.88637 0.91081 0.87958 0.91173 0.85355 0.89781 0.95906 0.97233 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.08 8.37 71.98 0.60 -5.48 16 2 C 0.12 3.54 1.13 -10.79 -0.01 3.53 16 3 C -0.13 -2.58 8.85 71.98 0.64 -1.94 16 4 C -0.17 -4.51 8.37 71.98 0.60 -3.91 16 5 O -0.37 -13.13 9.69 -55.54 -0.54 -13.67 16 6 C 0.67 27.70 8.08 129.79 1.05 28.75 16 7 O -0.60 -28.49 12.42 19.83 0.25 -28.24 16 8 N -0.60 -22.53 2.35 -919.00 -2.16 -24.69 16 9 C 0.11 3.22 6.63 87.17 0.58 3.80 16 10 C -0.11 -2.76 6.22 -11.74 -0.07 -2.84 16 11 H 0.15 2.68 8.14 -2.39 -0.02 2.66 16 12 C -0.11 -2.56 7.85 28.29 0.22 -2.33 16 13 C 0.11 3.86 6.14 41.90 0.26 4.12 16 14 H 0.09 3.72 8.14 -2.39 -0.02 3.70 16 15 C -0.12 -4.23 3.48 -13.70 -0.05 -4.28 16 16 H 0.11 3.74 7.86 -2.39 -0.02 3.72 16 17 C 0.00 -0.04 3.37 29.85 0.10 0.06 16 18 C -0.51 -30.86 9.66 25.60 0.25 -30.62 16 19 H 0.03 1.94 7.99 -2.91 -0.02 1.91 16 20 C 0.00 0.03 5.47 84.65 0.46 0.50 16 21 N -0.95 -63.00 13.96 21.45 0.30 -62.70 16 22 Si 0.94 47.03 27.47 68.60 1.88 48.92 16 23 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 24 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 25 H -0.24 -10.73 6.54 99.48 0.65 -10.08 16 26 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.05 2.12 5.87 -2.38 -0.01 2.10 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.83 5.89 -2.39 -0.01 1.82 16 33 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.10 2.25 8.14 -2.39 -0.02 2.24 16 36 H 0.07 2.16 7.09 -2.39 -0.02 2.14 16 37 H 0.13 2.41 7.86 -2.39 -0.02 2.39 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.02 1.04 7.20 -2.39 -0.02 1.03 16 40 H 0.01 0.47 5.09 -2.39 -0.01 0.46 16 41 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 Total: -1.00 -79.75 322.98 5.30 -74.45 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.95 Total: 16.58 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 4.63 Total: -10.64 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -1.86 Total: -87.40 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: -0.29 Total: -41.91 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.88 Total: 48.92 kcal Total: -79.75 5.30 -74.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535953058.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.023 kcal (2) G-P(sol) polarization free energy of solvation -79.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds