Wall clock time and date at job start Mon Mar 30 2020 06:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47134 * 2 1 4 4 C 1.52992 * 109.47283 * 239.99773 * 2 1 3 5 5 O 1.45199 * 109.47172 * 119.99736 * 2 1 3 6 6 C 1.34639 * 117.00093 * 60.00341 * 5 2 1 7 7 O 1.21504 * 119.99788 * 359.97438 * 6 5 2 8 8 N 1.34778 * 119.99927 * 180.02562 * 6 5 2 9 9 C 1.49193 * 129.44768 * 359.97080 * 8 6 5 10 10 C 1.56749 * 99.23647 * 180.17378 * 9 8 6 11 11 H 1.08994 * 118.46581 * 178.69221 * 10 9 8 12 12 C 1.55152 * 101.77425 * 43.29678 * 10 9 8 13 13 C 1.49913 * 129.40905 * 180.02562 * 8 6 5 14 14 H 1.08998 * 117.62917 * 1.14917 * 13 8 6 15 15 C 1.55746 * 108.28498 * 221.48023 * 13 8 6 16 16 H 1.09000 * 114.55454 * 53.24282 * 15 13 8 17 17 C 1.52994 * 114.49401 * 186.92830 * 15 13 8 18 18 C 1.50705 * 109.47372 * 265.01869 * 17 15 13 19 19 H 1.07994 * 120.00059 * 359.97438 * 18 17 15 20 20 C 1.37880 * 119.99772 * 180.02562 * 18 17 15 21 21 N 1.31514 * 120.00004 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99705 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47589 * 89.99393 * 22 20 18 24 24 H 1.48500 * 109.46940 * 209.99953 * 22 20 18 25 25 H 1.48500 * 109.46796 * 329.99150 * 22 20 18 26 26 H 1.09001 * 109.47212 * 300.00066 * 1 2 3 27 27 H 1.08992 * 109.47355 * 60.00139 * 1 2 3 28 28 H 1.09001 * 109.46988 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47039 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.47091 * 299.99670 * 3 2 1 31 31 H 1.08995 * 109.47509 * 60.00030 * 3 2 1 32 32 H 1.09001 * 109.47385 * 299.99941 * 4 2 1 33 33 H 1.09003 * 109.47348 * 59.99880 * 4 2 1 34 34 H 1.09003 * 109.47569 * 179.97438 * 4 2 1 35 35 H 1.08998 * 111.44038 * 62.66202 * 9 8 6 36 36 H 1.09000 * 111.43950 * 297.68134 * 9 8 6 37 37 H 1.09001 * 114.45057 * 49.98191 * 12 10 9 38 38 H 1.09000 * 114.45581 * 183.38825 * 12 10 9 39 39 H 1.08998 * 109.47031 * 25.01717 * 17 15 13 40 40 H 1.08998 * 109.47231 * 145.01632 * 17 15 13 41 41 H 0.97001 * 119.99730 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9510 -2.5094 0.5041 8 7 2.0673 -2.6653 2.4173 9 6 2.9218 -2.2225 3.5572 10 6 2.9575 -3.5572 4.3783 11 1 3.5395 -3.5851 5.2994 12 6 3.1780 -4.6106 3.2607 13 6 1.7955 -4.0903 2.7954 14 1 1.1912 -4.6879 2.1130 15 6 1.5133 -4.1444 4.3261 16 1 0.7347 -3.4622 4.6675 17 6 1.3809 -5.5576 4.8971 18 6 -0.0741 -5.9474 4.9412 19 1 -0.8290 -5.2562 4.5968 20 6 -0.4416 -7.1862 5.4223 21 7 0.4776 -8.0278 5.8421 22 14 -2.2452 -7.6697 5.4762 23 1 -2.6192 -8.3298 4.1997 24 1 -2.4724 -8.6085 6.6042 25 1 -3.0777 -6.4550 5.6679 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 -1.7489 -1.2491 33 1 1.6766 -0.2075 -2.1392 34 1 3.1300 -0.7209 -1.2494 35 1 2.4479 -1.4196 4.1220 36 1 3.9178 -1.9349 3.2204 37 1 3.9984 -4.3816 2.5804 38 1 3.1778 -5.6438 3.6080 39 1 1.9256 -6.2578 4.2639 40 1 1.7944 -5.5822 5.9054 41 1 0.2191 -8.8994 6.1802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535953070.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:22 Heat of formation + Delta-G solvation = -18.301566 kcal Electronic energy + Delta-G solvation = -21062.738946 eV Core-core repulsion = 17945.241651 eV Total energy + Delta-G solvation = -3117.497295 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.14156 -40.02063 -36.59329 -34.19902 -33.39555 -32.03114 -28.79141 -27.51516 -27.42052 -27.22107 -24.26785 -23.99471 -21.90834 -21.08920 -19.14135 -18.16337 -17.60792 -16.46867 -16.34459 -16.01942 -15.01577 -14.78683 -14.53722 -14.41356 -13.77395 -13.67342 -13.07846 -12.58502 -12.49158 -12.29663 -12.19144 -11.94925 -11.88922 -11.79193 -11.59594 -11.48394 -11.26386 -11.04047 -10.88870 -10.58191 -10.49834 -10.32387 -9.94514 -9.84854 -9.58052 -9.47274 -8.98802 -8.45699 -8.20253 -6.04580 -4.06153 2.18770 3.08318 3.32263 3.38600 3.42498 3.98140 4.43182 4.65736 4.69097 4.75296 4.83862 4.87499 5.00021 5.14345 5.33380 5.35070 5.44032 5.46358 5.58669 5.65229 5.68858 5.79606 5.80056 5.86254 5.87134 5.98007 6.24540 6.26519 6.28237 6.35654 6.43227 6.49482 6.63697 6.67554 6.90910 7.57180 7.66241 7.87523 7.93351 8.35670 8.56754 8.98817 9.58128 11.06365 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027258 B = 0.004443 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.960566 B = 6300.180338 C = 6904.305528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.365 6.365 6 C 0.674 3.326 7 O -0.571 6.571 8 N -0.605 5.605 9 C 0.118 3.882 10 C -0.149 4.149 11 H 0.115 0.885 12 C -0.156 4.156 13 C 0.124 3.876 14 H 0.125 0.875 15 C -0.082 4.082 16 H 0.069 0.931 17 C 0.041 3.959 18 C -0.520 4.520 19 H 0.056 0.944 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.120 0.880 39 H 0.032 0.968 40 H 0.029 0.971 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.081 15.685 -8.822 18.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.240 4.240 5 O -0.280 6.280 6 C 0.429 3.571 7 O -0.461 6.461 8 N -0.346 5.346 9 C -0.004 4.004 10 C -0.167 4.167 11 H 0.133 0.867 12 C -0.194 4.194 13 C 0.023 3.977 14 H 0.143 0.857 15 C -0.101 4.101 16 H 0.087 0.913 17 C 0.004 3.996 18 C -0.558 4.558 19 H 0.074 0.926 20 C -0.142 4.142 21 N -0.534 5.534 22 Si 0.720 3.280 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.138 0.862 39 H 0.050 0.950 40 H 0.047 0.953 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.838 15.505 -9.194 18.948 hybrid contribution -0.969 -0.164 -0.015 0.983 sum 4.868 15.342 -9.208 18.544 Atomic orbital electron populations 1.22518 0.94092 1.05291 1.02199 1.22004 0.94377 0.91376 0.82390 1.21838 1.02085 0.92751 1.02925 1.22514 1.01379 1.03723 0.96396 1.86295 1.71787 1.23836 1.46099 1.17279 0.78632 0.80010 0.81132 1.90879 1.41657 1.70459 1.43078 1.48175 1.52269 1.13642 1.20492 1.22885 0.94187 0.97195 0.86142 1.24702 1.01261 0.92498 0.98231 0.86742 1.24445 0.96222 1.01216 0.97499 1.23761 0.98318 0.78038 0.97563 0.85744 1.23956 0.93123 1.00763 0.92300 0.91266 1.19100 0.97451 0.86727 0.96296 1.21215 0.92390 1.00277 1.41917 0.92555 1.24977 0.97448 0.96537 0.95280 1.69944 1.32733 1.07949 1.42824 0.86590 0.85369 0.78422 0.77645 1.20601 1.21242 1.19881 0.92241 0.91366 0.89188 0.91620 0.90322 0.91552 0.89235 0.91365 0.92348 0.90905 0.90844 0.92589 0.86197 0.94990 0.95316 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 8.37 37.15 0.31 -1.96 16 2 C 0.14 1.68 1.13 -90.63 -0.10 1.57 16 3 C -0.14 -1.25 8.85 37.16 0.33 -0.92 16 4 C -0.18 -2.18 8.37 37.15 0.31 -1.87 16 5 O -0.36 -5.61 9.69 -40.32 -0.39 -6.00 16 6 C 0.67 12.07 8.08 54.06 0.44 12.50 16 7 O -0.57 -11.35 12.42 -19.27 -0.24 -11.59 16 8 N -0.60 -10.55 3.38 -168.72 -0.57 -11.12 16 9 C 0.12 1.71 7.36 -0.52 0.00 1.71 16 10 C -0.15 -2.33 6.14 -91.91 -0.56 -2.89 16 11 H 0.11 1.61 8.14 -51.93 -0.42 1.18 16 12 C -0.16 -2.60 7.27 -31.31 -0.23 -2.82 16 13 C 0.12 2.33 6.10 -69.63 -0.42 1.91 16 14 H 0.12 2.55 8.14 -51.93 -0.42 2.12 16 15 C -0.08 -1.62 3.86 -94.27 -0.36 -1.98 16 16 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 17 C 0.04 0.98 4.49 -27.88 -0.13 0.86 16 18 C -0.52 -14.18 9.08 -34.44 -0.31 -14.50 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.90 -25.91 13.29 55.43 0.74 -25.18 16 22 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 1.39 5.88 -51.93 -0.31 1.08 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.32 5.88 -51.93 -0.31 1.02 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 38 H 0.12 2.14 5.47 -51.93 -0.28 1.86 16 39 H 0.03 0.79 5.80 -51.93 -0.30 0.49 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 327.20 15.07 4.93 4.93 Total: -1.00 -30.18 327.20 -8.04 -38.22 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.65 Total: 1.14 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -0.83 Total: -6.85 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.17 Total: -36.30 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.63 Total: -17.58 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.18 -8.04 -38.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535953070.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.916 kcal (2) G-P(sol) polarization free energy of solvation -30.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds