Wall clock time and date at job start Mon Mar 30 2020 08:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.54486 * 109.47234 * 2 1 4 4 C 1.53246 * 107.28255 * 60.89378 * 3 2 1 5 5 C 1.51982 * 107.93087 * 179.97438 * 3 2 1 6 6 C 1.52374 * 114.77913 * 158.57006 * 5 3 2 7 7 C 1.53806 * 107.85981 * 197.57535 * 6 5 3 8 8 C 1.52745 * 110.08782 * 179.38370 * 7 6 5 9 9 C 1.53165 * 109.34516 * 61.61311 * 8 7 6 10 10 N 1.46847 * 108.61363 * 305.41253 * 9 8 7 11 11 C 1.37043 * 120.50649 * 232.87037 * 10 9 8 12 12 H 1.08007 * 119.99748 * 152.51190 * 11 10 9 13 13 C 1.38811 * 120.00309 * 332.51523 * 11 10 9 14 14 N 1.31617 * 119.99825 * 342.58672 * 13 11 10 15 15 Si 1.86794 * 120.00209 * 162.58488 * 13 11 10 16 16 H 1.48498 * 109.47063 * 94.34985 * 15 13 11 17 17 H 1.48498 * 109.47448 * 214.35349 * 15 13 11 18 18 H 1.48504 * 109.47343 * 334.35377 * 15 13 11 19 19 C 1.46956 * 119.00558 * 53.07445 * 10 9 8 20 20 C 1.52734 * 111.05484 * 316.41026 * 6 5 3 21 21 C 1.53049 * 109.30987 * 53.53324 * 20 6 5 22 22 O 1.41968 * 107.60377 * 302.35374 * 3 2 1 23 23 H 1.09007 * 109.47014 * 59.99475 * 1 2 3 24 24 H 1.08998 * 109.47293 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46885 * 300.00071 * 1 2 3 26 26 H 1.09000 * 109.46885 * 239.99929 * 2 1 3 27 27 H 1.08997 * 109.47108 * 120.00467 * 2 1 3 28 28 H 1.08998 * 109.47011 * 177.43205 * 4 3 2 29 29 H 1.09007 * 109.46958 * 297.43146 * 4 3 2 30 30 H 1.08999 * 109.47438 * 57.43022 * 4 3 2 31 31 H 1.10003 * 108.90890 * 36.51934 * 5 3 2 32 32 H 1.10010 * 108.89034 * 280.56918 * 5 3 2 33 33 H 1.08979 * 108.88988 * 59.11201 * 7 6 5 34 34 H 1.08966 * 108.90668 * 299.72392 * 7 6 5 35 35 H 1.08932 * 109.96553 * 301.16164 * 8 7 6 36 36 H 1.09181 * 109.46735 * 181.28068 * 8 7 6 37 37 H 1.08971 * 109.64159 * 185.58080 * 9 8 7 38 38 H 1.09003 * 109.61295 * 65.17957 * 9 8 7 39 39 H 0.96998 * 120.00225 * 179.97438 * 14 13 11 40 40 H 1.09083 * 109.40697 * 67.16563 * 19 10 9 41 41 H 1.09002 * 108.60603 * 186.59697 * 19 10 9 42 42 H 1.09016 * 109.90327 * 173.53517 * 20 6 5 43 43 H 1.09111 * 109.60850 * 293.61813 * 20 6 5 44 44 H 1.09397 * 108.99643 * 180.02562 * 21 20 6 45 45 H 1.08717 * 109.95368 * 60.87302 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0450 1.4565 0.0000 4 6 1.5257 2.1230 1.2785 5 6 3.5643 1.4156 0.0006 6 6 4.2375 2.6857 -0.5047 7 6 5.6937 2.3390 -0.8583 8 6 6.4144 3.5777 -1.3869 9 6 6.4377 4.6545 -0.2979 10 7 5.0603 4.8996 0.1485 11 6 4.5499 6.1713 0.1641 12 1 3.4872 6.3281 0.0525 13 6 5.3988 7.2580 0.3235 14 7 6.6146 7.0797 0.7951 15 14 4.8158 8.9733 -0.1315 16 1 4.2781 9.6499 1.0761 17 1 5.9558 9.7567 -0.6716 18 1 3.7496 8.8770 -1.1608 19 6 4.2387 3.7611 0.5825 20 6 3.5446 3.2118 -1.7600 21 6 2.0481 3.3725 -1.4824 22 8 1.5054 2.1027 -1.1431 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.9072 3.1423 1.3375 29 1 0.4360 2.1433 1.2608 30 1 1.8645 1.5574 2.1465 31 1 3.8984 0.5699 -0.6184 32 1 3.9148 1.2153 1.0240 33 1 5.6958 1.5600 -1.6204 34 1 6.1972 1.9745 0.0367 35 1 5.9005 3.9592 -2.2684 36 1 7.4394 3.3152 -1.6559 37 1 6.8618 5.5739 -0.7009 38 1 7.0398 4.3112 0.5433 39 1 7.2080 7.8390 0.9061 40 1 4.6493 3.3487 1.5052 41 1 3.2232 4.1137 0.7626 42 1 3.9658 4.1778 -2.0392 43 1 3.6876 2.5065 -2.5801 44 1 1.5570 3.7490 -2.3845 45 1 1.8948 4.0862 -0.6768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016808824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:03:48 Heat of formation + Delta-G solvation = -45.363453 kcal Electronic energy + Delta-G solvation = -22771.713087 eV Core-core repulsion = 19788.875395 eV Total energy + Delta-G solvation = -2982.837692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.17235 -37.28687 -34.34637 -33.76610 -31.49496 -30.46412 -29.84680 -27.98368 -26.47269 -25.21384 -23.58576 -22.98399 -22.00780 -20.66977 -19.16546 -17.60957 -16.68803 -15.84271 -15.66771 -14.81456 -14.49131 -14.35991 -14.07045 -13.79824 -13.66770 -13.40382 -12.96643 -12.62349 -12.37070 -12.26049 -12.03498 -11.72074 -11.54095 -11.33914 -11.21403 -11.03532 -10.90300 -10.84719 -10.65632 -10.55059 -10.29383 -10.22361 -10.04805 -9.86238 -9.60374 -9.46777 -9.26287 -8.83406 -8.43162 -6.63577 -5.77413 -3.18908 3.37110 3.44843 3.46735 4.04216 4.49799 4.76900 5.01441 5.11361 5.23033 5.35503 5.40081 5.41121 5.45474 5.59038 5.68349 5.72806 5.77994 5.80497 5.88766 5.91806 5.97962 6.00935 6.11131 6.14280 6.15684 6.26422 6.29480 6.33691 6.40192 6.46661 6.49760 6.67675 6.69766 6.72176 6.84532 6.93402 6.98235 7.01715 7.43293 7.69662 7.80468 7.81108 8.46639 9.23407 9.87555 10.43754 11.30839 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025729 B = 0.006212 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.002833 B = 4506.046899 C = 5001.010522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C 0.129 3.871 4 C -0.181 4.181 5 C -0.128 4.128 6 C -0.069 4.069 7 C -0.097 4.097 8 C -0.143 4.143 9 C 0.171 3.829 10 N -0.588 5.588 11 C -0.250 4.250 12 H 0.064 0.936 13 C 0.003 3.997 14 N -0.902 5.902 15 Si 0.898 3.102 16 H -0.288 1.288 17 H -0.290 1.290 18 H -0.279 1.279 19 C 0.157 3.843 20 C -0.133 4.133 21 C 0.065 3.935 22 O -0.378 6.378 23 H 0.062 0.938 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.015 0.985 39 H 0.253 0.747 40 H 0.013 0.987 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.053 0.947 44 H 0.083 0.917 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.221 -12.212 -2.624 14.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C 0.089 3.911 4 C -0.238 4.238 5 C -0.166 4.166 6 C -0.070 4.070 7 C -0.135 4.135 8 C -0.182 4.182 9 C 0.045 3.955 10 N -0.310 5.310 11 C -0.379 4.379 12 H 0.081 0.919 13 C -0.196 4.196 14 N -0.546 5.546 15 Si 0.728 3.272 16 H -0.215 1.215 17 H -0.216 1.216 18 H -0.204 1.204 19 C 0.031 3.969 20 C -0.170 4.170 21 C -0.011 4.011 22 O -0.297 6.297 23 H 0.081 0.919 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.033 0.967 39 H 0.063 0.937 40 H 0.031 0.969 41 H 0.073 0.927 42 H 0.107 0.893 43 H 0.072 0.928 44 H 0.101 0.899 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.224 -12.160 -2.684 14.397 hybrid contribution 0.172 1.044 0.024 1.058 sum -7.052 -11.116 -2.660 13.431 Atomic orbital electron populations 1.21743 0.95598 1.00692 1.02528 1.21926 0.96561 0.94571 1.01817 1.21180 0.92114 0.91984 0.85805 1.22630 1.01577 1.02244 0.97366 1.22024 0.94286 0.98349 1.01964 1.20780 0.94595 0.94710 0.96959 1.21592 0.95060 0.97325 0.99511 1.22155 0.98124 0.97170 1.00790 1.20748 0.85906 0.96299 0.92526 1.44042 1.10709 1.02004 1.74294 1.19162 0.92705 0.82302 1.43765 0.91856 1.24999 0.96986 0.97917 0.99672 1.70045 1.07864 1.29831 1.46909 0.86348 0.77741 0.84787 0.78321 1.21535 1.21605 1.20435 1.21010 0.95358 0.88147 0.92399 1.22016 0.95365 1.02705 0.96940 1.22417 0.93913 0.84794 0.99978 1.87334 1.62537 1.33627 1.46223 0.91869 0.93536 0.92660 0.91824 0.91327 0.91468 0.92022 0.92053 0.92305 0.91647 0.93888 0.92995 0.92496 0.93684 0.89689 0.96707 0.93726 0.96900 0.92698 0.89284 0.92821 0.89875 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.38 37.16 0.35 -1.27 16 2 C -0.11 -1.30 4.92 -25.95 -0.13 -1.43 16 3 C 0.13 1.79 0.78 -90.23 -0.07 1.72 16 4 C -0.18 -2.46 7.87 37.28 0.29 -2.17 16 5 C -0.13 -1.89 3.67 -27.57 -0.10 -1.99 16 6 C -0.07 -1.18 0.48 -154.59 -0.07 -1.25 16 7 C -0.10 -1.68 4.43 -26.44 -0.12 -1.79 16 8 C -0.14 -2.76 5.71 -26.78 -0.15 -2.91 16 9 C 0.17 4.06 5.30 -3.77 -0.02 4.04 16 10 N -0.59 -14.35 2.40 -172.48 -0.41 -14.77 16 11 C -0.25 -6.70 9.56 -15.01 -0.14 -6.84 16 12 H 0.06 1.67 7.87 -52.48 -0.41 1.26 16 13 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 14 N -0.90 -26.03 11.19 55.49 0.62 -25.41 16 15 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 C 0.16 3.25 4.60 -3.83 -0.02 3.23 16 20 C -0.13 -2.26 4.19 -26.84 -0.11 -2.37 16 21 C 0.07 1.05 6.51 37.18 0.24 1.29 16 22 O -0.38 -5.86 9.01 -35.23 -0.32 -6.18 16 23 H 0.06 0.76 7.56 -51.93 -0.39 0.36 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.58 6.36 -51.93 -0.33 0.25 16 26 H 0.06 0.75 8.05 -51.93 -0.42 0.33 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.04 4.95 -51.93 -0.26 0.78 16 29 H 0.06 0.79 6.41 -51.93 -0.33 0.45 16 30 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 31 H 0.06 0.82 7.52 -51.36 -0.39 0.44 16 32 H 0.06 0.94 7.80 -51.35 -0.40 0.54 16 33 H 0.04 0.67 8.01 -51.94 -0.42 0.25 16 34 H 0.05 0.90 8.14 -51.95 -0.42 0.48 16 35 H 0.06 1.11 6.57 -51.97 -0.34 0.76 16 36 H 0.04 0.79 8.16 -51.83 -0.42 0.37 16 37 H 0.08 2.26 6.06 -51.95 -0.31 1.95 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.01 0.28 8.01 -51.88 -0.42 -0.13 16 41 H 0.05 1.14 4.17 -51.93 -0.22 0.92 16 42 H 0.09 1.74 6.31 -51.92 -0.33 1.41 16 43 H 0.05 0.87 8.13 -51.87 -0.42 0.45 16 44 H 0.08 1.21 8.18 -51.70 -0.42 0.79 16 45 H 0.05 0.95 6.11 -52.09 -0.32 0.63 16 LS Contribution 321.04 15.07 4.84 4.84 Total: -1.00 -28.22 321.04 -8.24 -36.46 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -7.80 Total: 0.30 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -0.14 Total: -11.75 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.21 Total: -40.18 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.32 Total: -6.18 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.22 -8.24 -36.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016808824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.907 kcal (2) G-P(sol) polarization free energy of solvation -28.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds