Wall clock time and date at job start Mon Mar 30 2020 08:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.54486 * 109.47234 * 2 1 4 4 C 1.53246 * 107.28255 * 60.89378 * 3 2 1 5 5 C 1.51982 * 107.93087 * 179.97438 * 3 2 1 6 6 C 1.52374 * 114.77913 * 158.57006 * 5 3 2 7 7 C 1.53806 * 107.85981 * 197.57535 * 6 5 3 8 8 C 1.52745 * 110.08782 * 179.38370 * 7 6 5 9 9 C 1.53165 * 109.34516 * 61.61311 * 8 7 6 10 10 N 1.46847 * 108.61363 * 305.41253 * 9 8 7 11 11 C 1.37043 * 120.50649 * 232.87037 * 10 9 8 12 12 H 1.08007 * 119.99748 * 152.51190 * 11 10 9 13 13 C 1.38811 * 120.00309 * 332.51523 * 11 10 9 14 14 N 1.31617 * 119.99825 * 342.58672 * 13 11 10 15 15 Si 1.86794 * 120.00209 * 162.58488 * 13 11 10 16 16 H 1.48498 * 109.47063 * 94.34985 * 15 13 11 17 17 H 1.48498 * 109.47448 * 214.35349 * 15 13 11 18 18 H 1.48504 * 109.47343 * 334.35377 * 15 13 11 19 19 C 1.46956 * 119.00558 * 53.07445 * 10 9 8 20 20 C 1.52734 * 111.05484 * 316.41026 * 6 5 3 21 21 C 1.53049 * 109.30987 * 53.53324 * 20 6 5 22 22 O 1.41968 * 107.60377 * 302.35374 * 3 2 1 23 23 H 1.09007 * 109.47014 * 59.99475 * 1 2 3 24 24 H 1.08998 * 109.47293 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46885 * 300.00071 * 1 2 3 26 26 H 1.09000 * 109.46885 * 239.99929 * 2 1 3 27 27 H 1.08997 * 109.47108 * 120.00467 * 2 1 3 28 28 H 1.08998 * 109.47011 * 177.43205 * 4 3 2 29 29 H 1.09007 * 109.46958 * 297.43146 * 4 3 2 30 30 H 1.08999 * 109.47438 * 57.43022 * 4 3 2 31 31 H 1.10003 * 108.90890 * 36.51934 * 5 3 2 32 32 H 1.10010 * 108.89034 * 280.56918 * 5 3 2 33 33 H 1.08979 * 108.88988 * 59.11201 * 7 6 5 34 34 H 1.08966 * 108.90668 * 299.72392 * 7 6 5 35 35 H 1.08932 * 109.96553 * 301.16164 * 8 7 6 36 36 H 1.09181 * 109.46735 * 181.28068 * 8 7 6 37 37 H 1.08971 * 109.64159 * 185.58080 * 9 8 7 38 38 H 1.09003 * 109.61295 * 65.17957 * 9 8 7 39 39 H 0.96998 * 120.00225 * 179.97438 * 14 13 11 40 40 H 1.09083 * 109.40697 * 67.16563 * 19 10 9 41 41 H 1.09002 * 108.60603 * 186.59697 * 19 10 9 42 42 H 1.09016 * 109.90327 * 173.53517 * 20 6 5 43 43 H 1.09111 * 109.60850 * 293.61813 * 20 6 5 44 44 H 1.09397 * 108.99643 * 180.02562 * 21 20 6 45 45 H 1.08717 * 109.95368 * 60.87302 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0450 1.4565 0.0000 4 6 1.5257 2.1230 1.2785 5 6 3.5643 1.4156 0.0006 6 6 4.2375 2.6857 -0.5047 7 6 5.6937 2.3390 -0.8583 8 6 6.4144 3.5777 -1.3869 9 6 6.4377 4.6545 -0.2979 10 7 5.0603 4.8996 0.1485 11 6 4.5499 6.1713 0.1641 12 1 3.4872 6.3281 0.0525 13 6 5.3988 7.2580 0.3235 14 7 6.6146 7.0797 0.7951 15 14 4.8158 8.9733 -0.1315 16 1 4.2781 9.6499 1.0761 17 1 5.9558 9.7567 -0.6716 18 1 3.7496 8.8770 -1.1608 19 6 4.2387 3.7611 0.5825 20 6 3.5446 3.2118 -1.7600 21 6 2.0481 3.3725 -1.4824 22 8 1.5054 2.1027 -1.1431 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.9072 3.1423 1.3375 29 1 0.4360 2.1433 1.2608 30 1 1.8645 1.5574 2.1465 31 1 3.8984 0.5699 -0.6184 32 1 3.9148 1.2153 1.0240 33 1 5.6958 1.5600 -1.6204 34 1 6.1972 1.9745 0.0367 35 1 5.9005 3.9592 -2.2684 36 1 7.4394 3.3152 -1.6559 37 1 6.8618 5.5739 -0.7009 38 1 7.0398 4.3112 0.5433 39 1 7.2080 7.8390 0.9061 40 1 4.6493 3.3487 1.5052 41 1 3.2232 4.1137 0.7626 42 1 3.9658 4.1778 -2.0392 43 1 3.6876 2.5065 -2.5801 44 1 1.5570 3.7490 -2.3845 45 1 1.8948 4.0862 -0.6768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016808824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:03:48 Heat of formation + Delta-G solvation = -59.952537 kcal Electronic energy + Delta-G solvation = -22772.345718 eV Core-core repulsion = 19788.875395 eV Total energy + Delta-G solvation = -2983.470322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.48361 -38.77686 -35.58677 -35.39263 -33.13286 -32.34903 -30.92067 -29.24078 -27.90536 -27.09938 -24.76152 -24.28916 -23.74092 -22.16477 -20.42537 -19.14886 -18.53439 -17.10355 -16.96038 -16.70298 -15.76985 -15.73153 -15.49010 -15.33218 -15.20244 -14.68724 -14.30761 -14.09306 -14.00885 -13.55982 -13.29833 -13.11224 -12.88467 -12.78460 -12.69557 -12.47650 -12.40207 -12.29899 -12.10655 -11.90604 -11.87810 -11.79379 -11.57728 -11.47702 -11.04274 -10.96720 -10.67543 -10.50673 -10.11527 -8.64802 -7.86182 -5.30136 1.44539 1.46630 1.56035 2.50861 2.89576 3.28416 3.58136 3.74981 3.88211 3.91643 4.03285 4.14376 4.20561 4.37919 4.45583 4.47438 4.51723 4.57165 4.68902 4.72330 4.76147 4.78697 4.83855 4.89540 4.97249 5.03024 5.05717 5.09532 5.16364 5.17711 5.21899 5.23763 5.35211 5.38246 5.44491 5.49664 5.53743 5.59091 5.63117 5.67081 5.79295 6.40136 6.61714 7.16575 7.88920 8.39911 9.19952 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025729 B = 0.006212 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.002833 B = 4506.046899 C = 5001.010522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C 0.121 3.879 4 C -0.179 4.179 5 C -0.125 4.125 6 C -0.062 4.062 7 C -0.094 4.094 8 C -0.132 4.132 9 C 0.177 3.823 10 N -0.602 5.602 11 C -0.254 4.254 12 H 0.063 0.937 13 C -0.050 4.050 14 N -0.935 5.935 15 Si 0.961 3.039 16 H -0.288 1.288 17 H -0.293 1.293 18 H -0.269 1.269 19 C 0.160 3.840 20 C -0.126 4.126 21 C 0.070 3.930 22 O -0.379 6.379 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.051 0.949 38 H -0.011 1.011 39 H 0.248 0.752 40 H 0.000 1.000 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.450 -14.244 -3.434 16.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C 0.082 3.918 4 C -0.236 4.236 5 C -0.163 4.163 6 C -0.064 4.064 7 C -0.132 4.132 8 C -0.171 4.171 9 C 0.051 3.949 10 N -0.325 5.325 11 C -0.384 4.384 12 H 0.081 0.919 13 C -0.245 4.245 14 N -0.582 5.582 15 Si 0.789 3.211 16 H -0.215 1.215 17 H -0.219 1.219 18 H -0.194 1.194 19 C 0.035 3.965 20 C -0.164 4.164 21 C -0.007 4.007 22 O -0.299 6.299 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.008 0.992 39 H 0.057 0.943 40 H 0.018 0.982 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.115 0.885 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.478 -14.219 -3.499 16.920 hybrid contribution 0.534 1.647 0.329 1.762 sum -7.944 -12.573 -3.170 15.206 Atomic orbital electron populations 1.21722 0.95059 1.01693 1.01896 1.21931 0.97010 0.92655 1.02862 1.21378 0.91702 0.93426 0.85291 1.22614 1.02011 1.00919 0.98044 1.21989 0.94696 0.97108 1.02502 1.20672 0.95323 0.94651 0.95754 1.21585 0.94468 0.96829 1.00282 1.21984 0.99721 0.96556 0.98843 1.20560 0.85239 0.96231 0.92863 1.44251 1.11149 1.02375 1.74725 1.19447 0.92786 0.83641 1.42544 0.91917 1.25708 0.97236 1.01308 1.00231 1.70196 1.08983 1.30424 1.48571 0.85366 0.77222 0.80516 0.78011 1.21464 1.21932 1.19410 1.21095 0.94193 0.87984 0.93209 1.21920 0.95781 1.01533 0.97166 1.22319 0.93504 0.84965 0.99906 1.87352 1.62611 1.33048 1.46866 0.93222 0.91758 0.92574 0.91439 0.89604 0.93986 0.91309 0.90642 0.90484 0.91164 0.90910 0.93063 0.92618 0.91855 0.93090 0.99250 0.94254 0.98177 0.93163 0.92086 0.91251 0.88491 0.94677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.38 71.98 0.68 -2.07 16 2 C -0.11 -2.13 4.92 31.10 0.15 -1.98 16 3 C 0.12 3.07 0.78 -10.54 -0.01 3.07 16 4 C -0.18 -4.57 7.87 72.06 0.57 -4.00 16 5 C -0.12 -3.33 3.67 30.05 0.11 -3.22 16 6 C -0.06 -2.05 0.48 -52.23 -0.03 -2.08 16 7 C -0.09 -3.04 4.43 30.78 0.14 -2.90 16 8 C -0.13 -4.98 5.71 30.56 0.17 -4.81 16 9 C 0.18 8.65 5.30 86.37 0.46 9.11 16 10 N -0.60 -30.10 2.40 -699.61 -1.68 -31.78 16 11 C -0.25 -13.94 9.56 84.02 0.80 -13.14 16 12 H 0.06 3.38 7.87 -2.91 -0.02 3.36 16 13 C -0.05 -2.79 4.91 84.86 0.42 -2.37 16 14 N -0.94 -55.85 11.19 21.65 0.24 -55.61 16 15 Si 0.96 45.19 29.59 68.60 2.03 47.22 16 16 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 17 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 C 0.16 6.68 4.60 86.27 0.40 7.07 16 20 C -0.13 -4.12 4.19 30.52 0.13 -3.99 16 21 C 0.07 2.15 6.51 72.00 0.47 2.62 16 22 O -0.38 -10.94 9.01 -148.96 -1.34 -12.28 16 23 H 0.05 1.06 7.56 -2.38 -0.02 1.05 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 1.03 6.36 -2.39 -0.02 1.02 16 26 H 0.07 1.32 8.05 -2.39 -0.02 1.30 16 27 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 28 H 0.04 1.28 4.95 -2.39 -0.01 1.27 16 29 H 0.07 1.64 6.41 -2.38 -0.02 1.62 16 30 H 0.07 1.68 8.13 -2.39 -0.02 1.66 16 31 H 0.08 1.82 7.52 -1.85 -0.01 1.81 16 32 H 0.07 1.83 7.80 -1.85 -0.01 1.81 16 33 H 0.07 1.98 8.01 -2.40 -0.02 1.96 16 34 H 0.05 1.67 8.14 -2.40 -0.02 1.65 16 35 H 0.06 2.12 6.57 -2.42 -0.02 2.10 16 36 H 0.06 2.14 8.16 -2.29 -0.02 2.12 16 37 H 0.05 2.82 6.06 -2.40 -0.01 2.81 16 38 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.00 0.02 8.01 -2.34 -0.02 0.00 16 41 H 0.05 2.12 4.17 -2.39 -0.01 2.11 16 42 H 0.06 2.35 6.31 -2.38 -0.02 2.34 16 43 H 0.07 2.05 8.13 -2.33 -0.02 2.03 16 44 H 0.10 2.69 8.18 -2.18 -0.02 2.67 16 45 H 0.03 1.22 6.11 -2.54 -0.02 1.20 16 Total: -1.00 -61.73 321.04 4.67 -57.06 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.96 Total: 14.09 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 4.45 Total: -18.70 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -1.43 Total: -87.39 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -1.34 Total: -12.28 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -61.73 4.67 -57.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016808824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.889 kcal (2) G-P(sol) polarization free energy of solvation -61.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds