Wall clock time and date at job start Mon Mar 30 2020 08:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.54516 * 109.47073 * 2 1 4 4 C 1.53308 * 107.22973 * 306.72375 * 3 2 1 5 5 C 1.51971 * 107.88556 * 187.73584 * 3 2 1 6 6 C 1.51846 * 115.38364 * 203.89830 * 5 3 2 7 7 C 1.54019 * 108.60165 * 159.75547 * 6 5 3 8 8 C 1.52870 * 109.37703 * 58.06918 * 7 6 5 9 9 C 1.53088 * 109.53085 * 62.03347 * 8 7 6 10 10 N 1.46885 * 109.19095 * 306.73104 * 9 8 7 11 11 C 1.37068 * 120.34895 * 230.84894 * 10 9 8 12 12 H 1.07997 * 120.00419 * 153.33409 * 11 10 9 13 13 C 1.38820 * 120.00134 * 333.33603 * 11 10 9 14 14 N 1.31615 * 119.99844 * 159.47874 * 13 11 10 15 15 Si 1.86800 * 119.99556 * 339.47480 * 13 11 10 16 16 H 1.48500 * 109.47039 * 94.28261 * 15 13 11 17 17 H 1.48501 * 109.46898 * 214.28389 * 15 13 11 18 18 H 1.48497 * 109.47423 * 334.28361 * 15 13 11 19 19 C 1.46822 * 119.02488 * 51.29759 * 10 9 8 20 20 C 1.52950 * 111.51518 * 41.08785 * 6 5 3 21 21 C 1.53055 * 109.05942 * 307.10590 * 20 6 5 22 22 O 1.41958 * 107.56556 * 64.99617 * 3 2 1 23 23 H 1.08998 * 109.47419 * 299.99482 * 1 2 3 24 24 H 1.08997 * 109.46966 * 60.00458 * 1 2 3 25 25 H 1.09010 * 109.46598 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47657 * 240.00065 * 2 1 3 27 27 H 1.08997 * 109.47372 * 119.99896 * 2 1 3 28 28 H 1.08999 * 109.47169 * 176.68312 * 4 3 2 29 29 H 1.08999 * 109.47293 * 296.69184 * 4 3 2 30 30 H 1.09008 * 109.46809 * 56.68454 * 4 3 2 31 31 H 1.10205 * 108.61860 * 326.21833 * 5 3 2 32 32 H 1.10116 * 108.60428 * 81.28630 * 5 3 2 33 33 H 1.08847 * 108.91030 * 178.06410 * 7 6 5 34 34 H 1.08818 * 108.96670 * 297.99706 * 7 6 5 35 35 H 1.09194 * 109.35979 * 181.78826 * 8 7 6 36 36 H 1.08946 * 109.83971 * 301.50480 * 8 7 6 37 37 H 1.09038 * 109.60302 * 66.76929 * 9 8 7 38 38 H 1.09078 * 109.53810 * 186.82926 * 9 8 7 39 39 H 0.97006 * 119.99459 * 179.97438 * 14 13 11 40 40 H 1.08541 * 110.21554 * 184.94732 * 19 10 9 41 41 H 1.09557 * 108.88382 * 65.84537 * 19 10 9 42 42 H 1.09015 * 109.61422 * 187.17776 * 20 6 5 43 43 H 1.09019 * 109.60938 * 67.01416 * 20 6 5 44 44 H 1.09266 * 109.16983 * 181.00386 * 21 20 6 45 45 H 1.08713 * 109.90358 * 300.59700 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0450 1.4568 0.0000 4 6 1.3709 2.1768 -1.1737 5 6 3.5517 1.4191 -0.1947 6 6 4.3056 2.6307 0.3245 7 6 5.7823 2.2416 0.5252 8 6 6.3610 1.7462 -0.8002 9 6 6.3101 2.8740 -1.8342 10 7 4.9394 3.3961 -1.9121 11 6 4.3141 3.5219 -3.1254 12 1 3.2366 3.4809 -3.1844 13 6 5.0660 3.7021 -4.2783 14 7 4.5442 3.4247 -5.4543 15 14 6.8184 4.3384 -4.1605 16 1 7.7607 3.1911 -4.1323 17 1 7.1146 5.1935 -5.3380 18 1 6.9728 5.1365 -2.9178 19 6 4.2554 3.7893 -0.6739 20 6 3.7569 3.0969 1.6739 21 6 2.2447 3.3010 1.5549 22 8 1.6485 2.0514 1.2265 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6641 3.2266 -1.1727 29 1 1.6809 1.7137 -2.1104 30 1 0.2881 2.1019 -1.0723 31 1 3.9480 0.5175 0.2998 32 1 3.7643 1.2988 -1.2684 33 1 6.3345 3.1160 0.8647 34 1 5.8417 1.4522 1.2719 35 1 7.3985 1.4405 -0.6504 36 1 5.7860 0.8932 -1.1589 37 1 6.9893 3.6736 -1.5371 38 1 6.6087 2.4881 -2.8097 39 1 5.0695 3.5510 -6.2600 40 1 3.2284 4.0699 -0.8855 41 1 4.7729 4.6528 -0.2418 42 1 4.2307 4.0372 1.9565 43 1 3.9643 2.3430 2.4335 44 1 1.8534 3.6514 2.5131 45 1 2.0305 4.0439 0.7907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016808830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:03:57 Heat of formation + Delta-G solvation = -38.594652 kcal Electronic energy + Delta-G solvation = -23068.822033 eV Core-core repulsion = 20086.277858 eV Total energy + Delta-G solvation = -2982.544175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.25286 -37.45241 -34.53851 -33.77670 -31.83233 -30.85432 -29.77996 -27.83090 -26.76609 -25.24770 -23.77202 -23.29068 -21.83262 -20.80767 -19.39169 -17.78450 -16.78174 -15.87758 -15.72563 -15.22089 -14.63629 -14.24316 -14.09404 -13.82852 -13.70532 -13.33862 -13.14221 -12.99889 -12.60359 -12.21063 -11.98703 -11.83263 -11.54811 -11.52953 -11.31608 -11.22530 -11.01724 -10.94955 -10.70039 -10.53763 -10.36430 -10.19898 -9.94831 -9.88332 -9.51524 -9.48951 -9.36288 -8.90193 -8.59939 -6.93834 -5.93665 -3.28543 3.33012 3.49263 3.51858 4.05005 4.54255 4.83023 4.95426 5.04571 5.15727 5.22132 5.32247 5.38597 5.42154 5.51829 5.58851 5.62136 5.68472 5.77195 5.84548 5.91594 5.96028 6.00937 6.07430 6.11472 6.15545 6.21755 6.27775 6.32366 6.33835 6.38775 6.42286 6.46449 6.56846 6.62532 6.66569 6.69495 6.78368 6.79829 6.90923 7.01683 7.79752 7.98140 8.34226 8.96465 9.74405 10.12053 11.22121 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022153 B = 0.007554 C = 0.006536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.628178 B = 3705.945427 C = 4283.208000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C 0.129 3.871 4 C -0.173 4.173 5 C -0.123 4.123 6 C -0.069 4.069 7 C -0.100 4.100 8 C -0.136 4.136 9 C 0.125 3.875 10 N -0.601 5.601 11 C -0.256 4.256 12 H 0.087 0.913 13 C 0.023 3.977 14 N -0.909 5.909 15 Si 0.882 3.118 16 H -0.291 1.291 17 H -0.305 1.305 18 H -0.271 1.271 19 C 0.160 3.840 20 C -0.143 4.143 21 C 0.066 3.934 22 O -0.378 6.378 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.022 0.978 38 H 0.070 0.930 39 H 0.261 0.739 40 H 0.064 0.936 41 H 0.015 0.985 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.954 -3.986 13.590 14.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C 0.089 3.911 4 C -0.231 4.231 5 C -0.161 4.161 6 C -0.071 4.071 7 C -0.138 4.138 8 C -0.175 4.175 9 C -0.001 4.001 10 N -0.324 5.324 11 C -0.384 4.384 12 H 0.105 0.895 13 C -0.176 4.176 14 N -0.552 5.552 15 Si 0.713 3.287 16 H -0.219 1.219 17 H -0.234 1.234 18 H -0.196 1.196 19 C 0.034 3.966 20 C -0.181 4.181 21 C -0.011 4.011 22 O -0.297 6.297 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.033 0.967 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.072 -4.074 13.494 14.427 hybrid contribution 1.439 0.552 -0.260 1.563 sum -1.633 -3.523 13.234 13.792 Atomic orbital electron populations 1.21817 0.95777 1.00762 1.02411 1.21909 0.96335 0.94670 1.01909 1.21302 0.93380 0.92408 0.83961 1.22598 1.00236 1.01685 0.98541 1.21850 0.93064 0.96911 1.04255 1.20777 0.94728 0.96894 0.94696 1.21675 0.95298 0.99843 0.96941 1.21982 0.99390 0.99957 0.96172 1.21307 0.87183 0.93648 0.97915 1.44288 1.12406 1.72881 1.02805 1.18954 0.92857 1.44508 0.82061 0.89513 1.25254 0.97575 0.99664 0.95113 1.69833 1.37649 1.50120 0.97598 0.86985 0.86215 0.79019 0.76519 1.21855 1.23370 1.19645 1.20970 0.97022 0.92362 0.86288 1.22185 0.96741 1.01578 0.97622 1.22343 0.92387 0.86364 1.00002 1.87376 1.67282 1.35600 1.39482 0.92250 0.92213 0.93530 0.90981 0.91990 0.92119 0.91001 0.92422 0.93135 0.88865 0.92643 0.93136 0.93149 0.91600 0.96059 0.91203 0.92878 0.91750 0.96696 0.91430 0.91661 0.89829 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.23 37.16 0.34 -1.52 16 2 C -0.11 -1.51 4.90 -25.94 -0.13 -1.64 16 3 C 0.13 1.97 0.82 -90.19 -0.07 1.90 16 4 C -0.17 -2.85 7.97 37.32 0.30 -2.55 16 5 C -0.12 -2.02 2.76 -27.84 -0.08 -2.10 16 6 C -0.07 -1.12 0.47 -154.58 -0.07 -1.19 16 7 C -0.10 -1.57 4.42 -26.27 -0.12 -1.69 16 8 C -0.14 -2.40 5.71 -26.75 -0.15 -2.55 16 9 C 0.12 2.71 4.20 -3.79 -0.02 2.69 16 10 N -0.60 -13.81 2.05 -172.47 -0.35 -14.17 16 11 C -0.26 -6.89 10.06 -15.00 -0.15 -7.05 16 12 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 13 C 0.02 0.64 5.22 -17.43 -0.09 0.55 16 14 N -0.91 -27.50 13.97 55.49 0.78 -26.72 16 15 Si 0.88 22.41 24.29 -169.99 -4.13 18.29 16 16 H -0.29 -7.19 6.69 56.52 0.38 -6.81 16 17 H -0.31 -7.94 7.11 56.52 0.40 -7.54 16 18 H -0.27 -6.81 6.44 56.52 0.36 -6.44 16 19 C 0.16 3.09 4.76 -3.86 -0.02 3.07 16 20 C -0.14 -1.96 4.81 -26.73 -0.13 -2.08 16 21 C 0.07 0.89 6.58 37.19 0.24 1.14 16 22 O -0.38 -5.73 9.31 -35.23 -0.33 -6.06 16 23 H 0.06 0.75 7.76 -51.93 -0.40 0.35 16 24 H 0.06 0.75 6.11 -51.93 -0.32 0.43 16 25 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 26 H 0.07 0.98 8.12 -51.93 -0.42 0.55 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.06 1.07 5.13 -51.93 -0.27 0.80 16 29 H 0.07 1.29 8.00 -51.93 -0.42 0.88 16 30 H 0.06 0.86 5.93 -51.92 -0.31 0.55 16 31 H 0.05 0.79 7.56 -51.24 -0.39 0.40 16 32 H 0.09 1.82 6.28 -51.29 -0.32 1.50 16 33 H 0.05 0.86 8.13 -52.01 -0.42 0.44 16 34 H 0.05 0.71 8.07 -52.03 -0.42 0.29 16 35 H 0.05 0.79 8.16 -51.82 -0.42 0.37 16 36 H 0.07 1.19 6.68 -51.96 -0.35 0.84 16 37 H 0.02 0.47 6.76 -51.91 -0.35 0.12 16 38 H 0.07 1.67 4.65 -51.89 -0.24 1.43 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.06 1.27 4.62 -52.19 -0.24 1.03 16 41 H 0.02 0.29 8.11 -51.61 -0.42 -0.13 16 42 H 0.07 0.86 8.05 -51.92 -0.42 0.44 16 43 H 0.06 0.86 8.11 -51.92 -0.42 0.44 16 44 H 0.08 0.95 8.16 -51.78 -0.42 0.53 16 45 H 0.05 0.74 6.10 -52.09 -0.32 0.42 16 LS Contribution 314.91 15.07 4.75 4.75 Total: -1.00 -29.10 314.91 -7.18 -36.28 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.75 Total: 0.65 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -0.14 Total: -13.02 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.42 Total: -40.89 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.33 Total: -6.06 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.13 Total: 18.29 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.10 -7.18 -36.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016808830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.314 kcal (2) G-P(sol) polarization free energy of solvation -29.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds