Wall clock time and date at job start Mon Mar 30 2020 08:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.54516 * 109.47073 * 2 1 4 4 C 1.53308 * 107.22973 * 306.72375 * 3 2 1 5 5 C 1.51971 * 107.88556 * 187.73584 * 3 2 1 6 6 C 1.51846 * 115.38364 * 203.89830 * 5 3 2 7 7 C 1.54019 * 108.60165 * 159.75547 * 6 5 3 8 8 C 1.52870 * 109.37703 * 58.06918 * 7 6 5 9 9 C 1.53088 * 109.53085 * 62.03347 * 8 7 6 10 10 N 1.46885 * 109.19095 * 306.73104 * 9 8 7 11 11 C 1.37068 * 120.34895 * 230.84894 * 10 9 8 12 12 H 1.07997 * 120.00419 * 153.33409 * 11 10 9 13 13 C 1.38820 * 120.00134 * 333.33603 * 11 10 9 14 14 N 1.31615 * 119.99844 * 159.47874 * 13 11 10 15 15 Si 1.86800 * 119.99556 * 339.47480 * 13 11 10 16 16 H 1.48500 * 109.47039 * 94.28261 * 15 13 11 17 17 H 1.48501 * 109.46898 * 214.28389 * 15 13 11 18 18 H 1.48497 * 109.47423 * 334.28361 * 15 13 11 19 19 C 1.46822 * 119.02488 * 51.29759 * 10 9 8 20 20 C 1.52950 * 111.51518 * 41.08785 * 6 5 3 21 21 C 1.53055 * 109.05942 * 307.10590 * 20 6 5 22 22 O 1.41958 * 107.56556 * 64.99617 * 3 2 1 23 23 H 1.08998 * 109.47419 * 299.99482 * 1 2 3 24 24 H 1.08997 * 109.46966 * 60.00458 * 1 2 3 25 25 H 1.09010 * 109.46598 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47657 * 240.00065 * 2 1 3 27 27 H 1.08997 * 109.47372 * 119.99896 * 2 1 3 28 28 H 1.08999 * 109.47169 * 176.68312 * 4 3 2 29 29 H 1.08999 * 109.47293 * 296.69184 * 4 3 2 30 30 H 1.09008 * 109.46809 * 56.68454 * 4 3 2 31 31 H 1.10205 * 108.61860 * 326.21833 * 5 3 2 32 32 H 1.10116 * 108.60428 * 81.28630 * 5 3 2 33 33 H 1.08847 * 108.91030 * 178.06410 * 7 6 5 34 34 H 1.08818 * 108.96670 * 297.99706 * 7 6 5 35 35 H 1.09194 * 109.35979 * 181.78826 * 8 7 6 36 36 H 1.08946 * 109.83971 * 301.50480 * 8 7 6 37 37 H 1.09038 * 109.60302 * 66.76929 * 9 8 7 38 38 H 1.09078 * 109.53810 * 186.82926 * 9 8 7 39 39 H 0.97006 * 119.99459 * 179.97438 * 14 13 11 40 40 H 1.08541 * 110.21554 * 184.94732 * 19 10 9 41 41 H 1.09557 * 108.88382 * 65.84537 * 19 10 9 42 42 H 1.09015 * 109.61422 * 187.17776 * 20 6 5 43 43 H 1.09019 * 109.60938 * 67.01416 * 20 6 5 44 44 H 1.09266 * 109.16983 * 181.00386 * 21 20 6 45 45 H 1.08713 * 109.90358 * 300.59700 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0450 1.4568 0.0000 4 6 1.3709 2.1768 -1.1737 5 6 3.5517 1.4191 -0.1947 6 6 4.3056 2.6307 0.3245 7 6 5.7823 2.2416 0.5252 8 6 6.3610 1.7462 -0.8002 9 6 6.3101 2.8740 -1.8342 10 7 4.9394 3.3961 -1.9121 11 6 4.3141 3.5219 -3.1254 12 1 3.2366 3.4809 -3.1844 13 6 5.0660 3.7021 -4.2783 14 7 4.5442 3.4247 -5.4543 15 14 6.8184 4.3384 -4.1605 16 1 7.7607 3.1911 -4.1323 17 1 7.1146 5.1935 -5.3380 18 1 6.9728 5.1365 -2.9178 19 6 4.2554 3.7893 -0.6739 20 6 3.7569 3.0969 1.6739 21 6 2.2447 3.3010 1.5549 22 8 1.6485 2.0514 1.2265 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6641 3.2266 -1.1727 29 1 1.6809 1.7137 -2.1104 30 1 0.2881 2.1019 -1.0723 31 1 3.9480 0.5175 0.2998 32 1 3.7643 1.2988 -1.2684 33 1 6.3345 3.1160 0.8647 34 1 5.8417 1.4522 1.2719 35 1 7.3985 1.4405 -0.6504 36 1 5.7860 0.8932 -1.1589 37 1 6.9893 3.6736 -1.5371 38 1 6.6087 2.4881 -2.8097 39 1 5.0695 3.5510 -6.2600 40 1 3.2284 4.0699 -0.8855 41 1 4.7729 4.6528 -0.2418 42 1 4.2307 4.0372 1.9565 43 1 3.9643 2.3430 2.4335 44 1 1.8534 3.6514 2.5131 45 1 2.0305 4.0439 0.7907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016808830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:03:56 Heat of formation + Delta-G solvation = -55.481049 kcal Electronic energy + Delta-G solvation = -23069.554282 eV Core-core repulsion = 20086.277858 eV Total energy + Delta-G solvation = -2983.276424 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.55022 -38.89966 -35.85451 -35.31346 -33.53827 -32.63134 -30.90297 -29.15906 -28.22488 -27.06518 -24.99514 -24.52911 -23.57936 -22.22673 -20.65374 -19.15293 -18.69533 -17.36259 -17.07474 -16.79230 -16.01784 -15.65825 -15.58623 -15.33506 -14.91934 -14.87866 -14.68402 -14.27681 -14.13724 -13.71962 -13.51160 -13.24932 -13.15962 -12.86943 -12.72388 -12.56349 -12.44057 -12.28408 -12.15487 -12.00646 -11.81740 -11.59150 -11.52916 -11.46469 -11.19300 -10.97114 -10.75118 -10.59960 -10.13236 -8.88015 -8.14028 -5.43820 1.28133 1.39341 1.47578 2.42050 2.90538 3.07770 3.36033 3.68231 3.74931 3.90155 4.03056 4.10116 4.14544 4.27504 4.31763 4.39568 4.46001 4.51305 4.53982 4.68368 4.71380 4.74724 4.77248 4.85217 4.90203 4.97609 5.02069 5.03427 5.06573 5.09025 5.14164 5.17710 5.20057 5.27667 5.33656 5.37253 5.43012 5.50595 5.56682 5.62548 5.90246 6.16409 6.61498 6.94880 7.66369 8.06308 9.05685 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022153 B = 0.007554 C = 0.006536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.628178 B = 3705.945427 C = 4283.208000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C 0.131 3.869 4 C -0.166 4.166 5 C -0.116 4.116 6 C -0.067 4.067 7 C -0.096 4.096 8 C -0.130 4.130 9 C 0.119 3.881 10 N -0.611 5.611 11 C -0.233 4.233 12 H 0.056 0.944 13 C -0.037 4.037 14 N -0.957 5.957 15 Si 0.943 3.057 16 H -0.280 1.280 17 H -0.315 1.315 18 H -0.263 1.263 19 C 0.158 3.842 20 C -0.135 4.135 21 C 0.058 3.942 22 O -0.379 6.379 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.026 0.974 38 H 0.044 0.956 39 H 0.259 0.741 40 H 0.052 0.948 41 H 0.022 0.978 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.113 0.887 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.055 -4.496 17.011 17.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C 0.092 3.908 4 C -0.223 4.223 5 C -0.154 4.154 6 C -0.069 4.069 7 C -0.133 4.133 8 C -0.169 4.169 9 C -0.006 4.006 10 N -0.335 5.335 11 C -0.363 4.363 12 H 0.073 0.927 13 C -0.231 4.231 14 N -0.604 5.604 15 Si 0.773 3.227 16 H -0.207 1.207 17 H -0.245 1.245 18 H -0.188 1.188 19 C 0.033 3.967 20 C -0.173 4.173 21 C -0.018 4.018 22 O -0.299 6.299 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.040 0.960 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.131 0.869 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.160 -4.586 16.975 17.716 hybrid contribution 1.062 0.714 -1.289 1.816 sum -1.098 -3.872 15.686 16.195 Atomic orbital electron populations 1.21775 0.94774 1.01852 1.01965 1.21909 0.97244 0.93363 1.02212 1.21216 0.92651 0.93335 0.83615 1.22518 1.01240 1.00369 0.98192 1.21758 0.93977 0.97769 1.01855 1.20729 0.95789 0.95227 0.95126 1.21683 0.94302 1.01083 0.96239 1.21894 1.01158 0.97868 0.95947 1.21364 0.86070 0.95077 0.98102 1.44378 1.13117 1.73430 1.02592 1.18877 0.91764 1.41838 0.83820 0.92661 1.25831 1.01432 1.01009 0.94868 1.69963 1.39379 1.52809 0.98289 0.85981 0.82189 0.78434 0.76084 1.20718 1.24452 1.18765 1.21116 0.95965 0.94100 0.85528 1.22141 0.96425 1.02779 0.95940 1.22544 0.92759 0.85482 1.01018 1.87385 1.67562 1.36211 1.38700 0.92271 0.92987 0.91740 0.91478 0.90823 0.93992 0.93715 0.91091 0.91733 0.92742 0.91700 0.90353 0.90546 0.92526 0.95644 0.93815 0.93234 0.92997 0.96036 0.89873 0.89962 0.86887 0.94272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.23 71.98 0.66 -2.73 16 2 C -0.11 -2.83 4.90 31.11 0.15 -2.68 16 3 C 0.13 3.89 0.82 -10.51 -0.01 3.88 16 4 C -0.17 -5.62 7.97 72.09 0.57 -5.05 16 5 C -0.12 -3.66 2.76 29.88 0.08 -3.58 16 6 C -0.07 -2.01 0.47 -52.23 -0.02 -2.03 16 7 C -0.10 -2.64 4.42 30.90 0.14 -2.50 16 8 C -0.13 -4.26 5.71 30.58 0.17 -4.08 16 9 C 0.12 5.01 4.20 86.34 0.36 5.38 16 10 N -0.61 -28.23 2.05 -699.56 -1.44 -29.66 16 11 C -0.23 -13.06 10.06 84.01 0.84 -12.21 16 12 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 13 C -0.04 -2.18 5.22 84.86 0.44 -1.74 16 14 N -0.96 -60.51 13.97 21.65 0.30 -60.20 16 15 Si 0.94 47.34 24.29 68.60 1.67 49.01 16 16 H -0.28 -13.42 6.69 99.48 0.67 -12.76 16 17 H -0.32 -16.20 7.11 99.48 0.71 -15.49 16 18 H -0.26 -12.66 6.44 99.48 0.64 -12.02 16 19 C 0.16 5.99 4.76 86.33 0.41 6.40 16 20 C -0.13 -3.16 4.81 30.60 0.15 -3.01 16 21 C 0.06 1.41 6.58 72.00 0.47 1.89 16 22 O -0.38 -10.57 9.31 -148.96 -1.39 -11.95 16 23 H 0.06 1.37 7.76 -2.39 -0.02 1.35 16 24 H 0.05 1.26 6.11 -2.39 -0.01 1.25 16 25 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.07 1.78 8.12 -2.39 -0.02 1.76 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.04 1.55 5.13 -2.39 -0.01 1.53 16 29 H 0.04 1.72 8.00 -2.39 -0.02 1.70 16 30 H 0.07 2.15 5.93 -2.38 -0.01 2.14 16 31 H 0.06 1.85 7.56 -1.74 -0.01 1.84 16 32 H 0.05 2.16 6.28 -1.79 -0.01 2.14 16 33 H 0.06 1.71 8.13 -2.47 -0.02 1.69 16 34 H 0.08 1.80 8.07 -2.48 -0.02 1.78 16 35 H 0.08 2.12 8.16 -2.28 -0.02 2.10 16 36 H 0.06 1.96 6.68 -2.42 -0.02 1.95 16 37 H 0.03 1.07 6.76 -2.37 -0.02 1.05 16 38 H 0.04 2.07 4.65 -2.35 -0.01 2.06 16 39 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 40 H 0.05 2.08 4.62 -2.63 -0.01 2.07 16 41 H 0.02 0.80 8.11 -2.09 -0.02 0.78 16 42 H 0.08 1.74 8.05 -2.38 -0.02 1.72 16 43 H 0.08 1.73 8.11 -2.38 -0.02 1.71 16 44 H 0.11 2.12 8.16 -2.25 -0.02 2.10 16 45 H 0.04 1.06 6.10 -2.54 -0.02 1.04 16 Total: -1.00 -64.62 314.91 4.43 -60.19 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.85 Total: 14.70 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 4.43 Total: -22.07 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -1.13 Total: -89.87 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -1.39 Total: -11.95 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 1.67 Total: 49.01 kcal Total: -64.62 4.43 -60.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016808830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.707 kcal (2) G-P(sol) polarization free energy of solvation -64.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds