Wall clock time and date at job start Mon Mar 30 2020 06:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99759 * 2 1 4 4 H 1.48503 * 109.47063 * 306.82590 * 3 2 1 5 5 H 1.48496 * 109.47311 * 66.82561 * 3 2 1 6 6 H 1.48503 * 109.46760 * 186.82711 * 3 2 1 7 7 C 1.38806 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00103 * 345.21262 * 7 2 1 9 9 N 1.36934 * 120.00013 * 165.20104 * 7 2 1 10 10 C 1.46498 * 120.00486 * 287.71922 * 9 7 2 11 11 C 1.54260 * 110.03448 * 286.76664 * 10 9 7 12 12 C 1.54896 * 104.19721 * 95.67066 * 11 10 9 13 13 C 1.54882 * 102.74621 * 37.94442 * 12 11 10 14 14 C 1.53877 * 110.02897 * 43.93162 * 10 9 7 15 15 C 1.46500 * 119.99790 * 107.72435 * 9 7 2 16 16 H 1.09007 * 108.85525 * 186.98136 * 15 9 7 17 17 C 1.50476 * 108.87541 * 305.53822 * 15 9 7 18 18 C 1.54370 * 108.45944 * 214.99931 * 17 15 9 19 19 C 1.45544 * 112.33500 * 279.90304 * 18 17 15 20 20 C 1.54239 * 112.40721 * 61.96743 * 19 18 17 21 21 C 1.50475 * 108.51750 * 280.00457 * 20 19 18 22 22 C 1.54059 * 108.88091 * 68.41987 * 15 9 7 23 23 H 1.09004 * 108.81597 * 76.75810 * 22 15 9 24 24 O 1.42901 * 108.81303 * 318.36357 * 22 15 9 25 25 H 0.96999 * 120.00117 * 359.97438 * 1 2 3 26 26 H 1.09002 * 110.06011 * 165.34529 * 10 9 7 27 27 H 1.09000 * 110.48938 * 214.35189 * 11 10 9 28 28 H 1.09001 * 110.48551 * 336.99486 * 11 10 9 29 29 H 1.08998 * 110.75172 * 279.62567 * 12 11 10 30 30 H 1.08999 * 110.75315 * 156.25481 * 12 11 10 31 31 H 1.09004 * 110.48602 * 203.38133 * 13 12 11 32 32 H 1.08997 * 110.60000 * 80.79227 * 13 12 11 33 33 H 1.09002 * 110.03617 * 359.97438 * 14 10 9 34 34 H 1.09001 * 110.03213 * 121.43108 * 14 10 9 35 35 H 1.09004 * 109.62727 * 334.63840 * 17 15 9 36 36 H 1.08995 * 109.62976 * 95.21634 * 17 15 9 37 37 H 1.08996 * 108.91327 * 159.18620 * 18 17 15 38 38 H 1.09001 * 108.87941 * 40.59638 * 18 17 15 39 39 H 1.08998 * 108.89488 * 301.21206 * 19 18 17 40 40 H 1.09006 * 108.89304 * 182.71981 * 19 18 17 41 41 H 1.09001 * 109.62965 * 160.29715 * 20 19 18 42 42 H 1.09004 * 109.63312 * 39.71543 * 20 19 18 43 43 H 1.08995 * 108.87685 * 333.38380 * 21 20 19 44 44 H 1.08996 * 108.87743 * 214.93013 * 21 20 19 45 45 H 0.96699 * 113.99941 * 180.02562 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.7708 2.4660 -1.1207 5 1 2.0205 2.3220 1.2871 6 1 3.7015 1.3514 -0.1664 7 6 2.0102 -1.2021 0.0005 8 1 1.4971 -2.1218 0.2397 9 7 3.3455 -1.2218 -0.3024 10 6 3.7870 -1.0044 -1.6822 11 6 3.4739 -2.2480 -2.5395 12 6 2.1163 -1.9168 -3.2078 13 6 2.2493 -0.4058 -3.5210 14 6 3.0084 0.1670 -2.3063 15 6 4.3326 -1.4606 0.7535 16 1 5.3313 -1.3154 0.3414 17 6 4.1129 -0.4643 1.8596 18 6 5.4853 -0.0858 2.4563 19 6 5.9758 -1.0854 3.3935 20 6 6.1986 -2.4579 2.7260 21 6 4.8693 -3.1530 2.6072 22 6 4.2007 -2.9166 1.2393 23 1 4.6639 -3.5756 0.5049 24 8 2.8136 -3.2443 1.3418 25 1 -0.4850 0.8400 0.0004 26 1 4.8566 -0.7955 -1.7040 27 1 4.2455 -2.3946 -3.2953 28 1 3.3829 -3.1327 -1.9092 29 1 1.2920 -2.0973 -2.5179 30 1 1.9869 -2.4914 -4.1249 31 1 1.2648 0.0541 -3.6070 32 1 2.8221 -0.2527 -4.4356 33 1 2.3018 0.5734 -1.5826 34 1 3.7002 0.9443 -2.6309 35 1 3.6299 0.4269 1.4590 36 1 3.4856 -0.9080 2.6327 37 1 5.3942 0.8689 2.9742 38 1 6.2054 0.0206 1.6449 39 1 5.2513 -1.1986 4.2000 40 1 6.9199 -0.7406 3.8154 41 1 6.8721 -3.0578 3.3382 42 1 6.6283 -2.3173 1.7341 43 1 4.2077 -2.7852 3.3913 44 1 5.0176 -4.2238 2.7469 45 1 2.6440 -4.1474 1.6431 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088762261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:59 Heat of formation + Delta-G solvation = -22.758173 kcal Electronic energy + Delta-G solvation = -23301.180195 eV Core-core repulsion = 20319.322742 eV Total energy + Delta-G solvation = -2981.857454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.13847 -37.45602 -35.24215 -33.70858 -31.70744 -30.96257 -29.18294 -27.88273 -26.51640 -24.53214 -23.71945 -22.19326 -20.14915 -19.81350 -18.77098 -18.73019 -17.01203 -16.31449 -15.70348 -14.94709 -14.67460 -14.21102 -14.14967 -13.64684 -13.22758 -13.01893 -12.91436 -12.65663 -12.31482 -12.18559 -11.86412 -11.53313 -11.10706 -11.05014 -10.79019 -10.55822 -10.46091 -10.33358 -10.13732 -10.09372 -9.98695 -9.94091 -9.84348 -9.64555 -9.60190 -9.29278 -9.00840 -8.82347 -8.23170 -6.07043 -5.64555 -3.58559 3.41441 3.53618 3.57966 4.55606 4.89978 4.91943 5.12059 5.28183 5.29841 5.37106 5.58750 5.65551 5.68560 5.70765 5.76223 5.81582 5.88384 5.99482 6.01937 6.21146 6.24546 6.35475 6.40838 6.43150 6.48377 6.50512 6.52470 6.53666 6.59806 6.64504 6.66739 6.79143 6.83850 6.86464 6.93792 7.07277 7.19146 7.24105 7.32873 7.42352 8.32828 8.57125 9.14265 9.34855 9.86264 10.47042 11.30885 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019671 B = 0.009306 C = 0.008116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.041349 B = 3008.202498 C = 3449.046681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.048 3.952 3 Si 0.885 3.115 4 H -0.307 1.307 5 H -0.310 1.310 6 H -0.259 1.259 7 C -0.235 4.235 8 H 0.088 0.912 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.127 4.127 12 C -0.110 4.110 13 C -0.112 4.112 14 C -0.149 4.149 15 C 0.188 3.812 16 H 0.050 0.950 17 C -0.120 4.120 18 C -0.124 4.124 19 C -0.112 4.112 20 C -0.112 4.112 21 C -0.153 4.153 22 C 0.100 3.900 23 H 0.030 0.970 24 O -0.514 6.514 25 H 0.258 0.742 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.031 -4.261 1.443 11.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.151 4.151 3 Si 0.718 3.282 4 H -0.236 1.236 5 H -0.240 1.240 6 H -0.185 1.185 7 C -0.365 4.365 8 H 0.105 0.895 9 N -0.315 5.315 10 C 0.066 3.934 11 C -0.167 4.167 12 C -0.148 4.148 13 C -0.150 4.150 14 C -0.186 4.186 15 C 0.081 3.919 16 H 0.068 0.932 17 C -0.159 4.159 18 C -0.162 4.162 19 C -0.150 4.150 20 C -0.150 4.150 21 C -0.191 4.191 22 C 0.039 3.961 23 H 0.048 0.952 24 O -0.315 6.315 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 10.808 -3.541 1.218 11.438 hybrid contribution 0.514 0.528 0.213 0.767 sum 11.322 -3.013 1.432 11.803 Atomic orbital electron populations 1.69818 1.06178 1.26140 1.52182 1.26314 0.94962 0.97907 0.95905 0.87044 0.81825 0.84550 0.74799 1.23617 1.23952 1.18451 1.18681 0.82385 0.92865 1.42521 0.89528 1.44162 1.03140 1.84096 1.00086 1.21112 0.94314 0.91923 0.86075 1.22774 0.96095 0.99899 0.97933 1.22351 0.99152 0.94518 0.98747 1.22149 0.99337 0.96945 0.96551 1.23001 0.99287 0.98196 0.98159 1.20319 0.91890 0.89863 0.89818 0.93179 1.21863 0.94708 1.00393 0.98905 1.20583 0.98443 0.98231 0.98898 1.20477 1.00271 0.95446 0.98758 1.21238 0.96937 0.96015 1.00763 1.22180 0.97314 0.99309 1.00290 1.22907 0.82594 0.98212 0.92436 0.95231 1.87284 1.22513 1.32145 1.89555 0.93149 0.94026 0.94199 0.91779 0.89731 0.94105 0.92685 0.93579 0.89341 0.94179 0.91243 0.91458 0.93073 0.92797 0.92325 0.93193 0.92595 0.91790 0.91212 0.93305 0.81646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.27 13.97 55.49 0.78 -26.50 16 2 C 0.05 1.37 4.60 -17.43 -0.08 1.29 16 3 Si 0.89 22.95 20.83 -169.99 -3.54 19.41 16 4 H -0.31 -8.11 7.11 56.52 0.40 -7.70 16 5 H -0.31 -8.25 7.11 56.52 0.40 -7.85 16 6 H -0.26 -6.39 6.01 56.52 0.34 -6.05 16 7 C -0.23 -6.25 6.44 -15.06 -0.10 -6.34 16 8 H 0.09 2.61 6.26 -52.49 -0.33 2.28 16 9 N -0.59 -13.52 1.23 -157.69 -0.19 -13.71 16 10 C 0.17 3.65 3.26 -66.82 -0.22 3.43 16 11 C -0.13 -2.47 6.36 -25.07 -0.16 -2.63 16 12 C -0.11 -2.20 6.62 -24.74 -0.16 -2.36 16 13 C -0.11 -2.25 6.83 -25.07 -0.17 -2.42 16 14 C -0.15 -3.31 4.26 -25.61 -0.11 -3.42 16 15 C 0.19 3.72 2.07 -68.64 -0.14 3.57 16 16 H 0.05 0.94 6.06 -51.92 -0.31 0.62 16 17 C -0.12 -2.42 4.60 -27.27 -0.13 -2.55 16 18 C -0.12 -1.97 5.27 -29.53 -0.16 -2.13 16 19 C -0.11 -1.51 5.26 -29.60 -0.16 -1.66 16 20 C -0.11 -1.44 5.61 -27.34 -0.15 -1.59 16 21 C -0.15 -2.18 4.88 -27.43 -0.13 -2.31 16 22 C 0.10 1.76 3.24 -25.62 -0.08 1.67 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 O -0.51 -10.20 9.84 -35.23 -0.35 -10.55 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.04 0.82 7.64 -51.93 -0.40 0.43 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 1.30 8.04 -51.93 -0.42 0.88 16 29 H 0.08 1.98 7.63 -51.93 -0.40 1.58 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 2.24 1.22 -51.93 -0.06 2.18 16 34 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.61 2.85 -51.93 -0.15 1.46 16 36 H 0.07 1.42 6.97 -51.93 -0.36 1.06 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.83 7.46 -51.93 -0.39 0.44 16 39 H 0.06 0.80 7.47 -51.93 -0.39 0.41 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.84 6.97 -51.93 -0.36 0.48 16 43 H 0.07 1.07 6.62 -51.93 -0.34 0.73 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.34 5.25 9.04 45.56 0.41 5.66 16 LS Contribution 309.36 15.07 4.66 4.66 Total: -1.00 -29.80 309.36 -7.51 -37.31 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.92 Total: 6.83 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -1.95 Total: -17.46 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.58 Total: -40.21 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.35 Total: -10.55 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -3.54 Total: 19.41 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.80 -7.51 -37.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088762261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.550 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds