Wall clock time and date at job start Mon Mar 30 2020 06:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99759 * 2 1 4 4 H 1.48503 * 109.47063 * 306.82590 * 3 2 1 5 5 H 1.48496 * 109.47311 * 66.82561 * 3 2 1 6 6 H 1.48503 * 109.46760 * 186.82711 * 3 2 1 7 7 C 1.38806 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00103 * 345.21262 * 7 2 1 9 9 N 1.36934 * 120.00013 * 165.20104 * 7 2 1 10 10 C 1.46498 * 120.00486 * 287.71922 * 9 7 2 11 11 C 1.54260 * 110.03448 * 286.76664 * 10 9 7 12 12 C 1.54896 * 104.19721 * 95.67066 * 11 10 9 13 13 C 1.54882 * 102.74621 * 37.94442 * 12 11 10 14 14 C 1.53877 * 110.02897 * 43.93162 * 10 9 7 15 15 C 1.46500 * 119.99790 * 107.72435 * 9 7 2 16 16 H 1.09007 * 108.85525 * 186.98136 * 15 9 7 17 17 C 1.50476 * 108.87541 * 305.53822 * 15 9 7 18 18 C 1.54370 * 108.45944 * 214.99931 * 17 15 9 19 19 C 1.45544 * 112.33500 * 279.90304 * 18 17 15 20 20 C 1.54239 * 112.40721 * 61.96743 * 19 18 17 21 21 C 1.50475 * 108.51750 * 280.00457 * 20 19 18 22 22 C 1.54059 * 108.88091 * 68.41987 * 15 9 7 23 23 H 1.09004 * 108.81597 * 76.75810 * 22 15 9 24 24 O 1.42901 * 108.81303 * 318.36357 * 22 15 9 25 25 H 0.96999 * 120.00117 * 359.97438 * 1 2 3 26 26 H 1.09002 * 110.06011 * 165.34529 * 10 9 7 27 27 H 1.09000 * 110.48938 * 214.35189 * 11 10 9 28 28 H 1.09001 * 110.48551 * 336.99486 * 11 10 9 29 29 H 1.08998 * 110.75172 * 279.62567 * 12 11 10 30 30 H 1.08999 * 110.75315 * 156.25481 * 12 11 10 31 31 H 1.09004 * 110.48602 * 203.38133 * 13 12 11 32 32 H 1.08997 * 110.60000 * 80.79227 * 13 12 11 33 33 H 1.09002 * 110.03617 * 359.97438 * 14 10 9 34 34 H 1.09001 * 110.03213 * 121.43108 * 14 10 9 35 35 H 1.09004 * 109.62727 * 334.63840 * 17 15 9 36 36 H 1.08995 * 109.62976 * 95.21634 * 17 15 9 37 37 H 1.08996 * 108.91327 * 159.18620 * 18 17 15 38 38 H 1.09001 * 108.87941 * 40.59638 * 18 17 15 39 39 H 1.08998 * 108.89488 * 301.21206 * 19 18 17 40 40 H 1.09006 * 108.89304 * 182.71981 * 19 18 17 41 41 H 1.09001 * 109.62965 * 160.29715 * 20 19 18 42 42 H 1.09004 * 109.63312 * 39.71543 * 20 19 18 43 43 H 1.08995 * 108.87685 * 333.38380 * 21 20 19 44 44 H 1.08996 * 108.87743 * 214.93013 * 21 20 19 45 45 H 0.96699 * 113.99941 * 180.02562 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.7708 2.4660 -1.1207 5 1 2.0205 2.3220 1.2871 6 1 3.7015 1.3514 -0.1664 7 6 2.0102 -1.2021 0.0005 8 1 1.4971 -2.1218 0.2397 9 7 3.3455 -1.2218 -0.3024 10 6 3.7870 -1.0044 -1.6822 11 6 3.4739 -2.2480 -2.5395 12 6 2.1163 -1.9168 -3.2078 13 6 2.2493 -0.4058 -3.5210 14 6 3.0084 0.1670 -2.3063 15 6 4.3326 -1.4606 0.7535 16 1 5.3313 -1.3154 0.3414 17 6 4.1129 -0.4643 1.8596 18 6 5.4853 -0.0858 2.4563 19 6 5.9758 -1.0854 3.3935 20 6 6.1986 -2.4579 2.7260 21 6 4.8693 -3.1530 2.6072 22 6 4.2007 -2.9166 1.2393 23 1 4.6639 -3.5756 0.5049 24 8 2.8136 -3.2443 1.3418 25 1 -0.4850 0.8400 0.0004 26 1 4.8566 -0.7955 -1.7040 27 1 4.2455 -2.3946 -3.2953 28 1 3.3829 -3.1327 -1.9092 29 1 1.2920 -2.0973 -2.5179 30 1 1.9869 -2.4914 -4.1249 31 1 1.2648 0.0541 -3.6070 32 1 2.8221 -0.2527 -4.4356 33 1 2.3018 0.5734 -1.5826 34 1 3.7002 0.9443 -2.6309 35 1 3.6299 0.4269 1.4590 36 1 3.4856 -0.9080 2.6327 37 1 5.3942 0.8689 2.9742 38 1 6.2054 0.0206 1.6449 39 1 5.2513 -1.1986 4.2000 40 1 6.9199 -0.7406 3.8154 41 1 6.8721 -3.0578 3.3382 42 1 6.6283 -2.3173 1.7341 43 1 4.2077 -2.7852 3.3913 44 1 5.0176 -4.2238 2.7469 45 1 2.6440 -4.1474 1.6431 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088762261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:58 Heat of formation + Delta-G solvation = -42.533186 kcal Electronic energy + Delta-G solvation = -23302.037704 eV Core-core repulsion = 20319.322742 eV Total energy + Delta-G solvation = -2982.714962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.62241 -39.00558 -36.64565 -35.39644 -33.70137 -32.27472 -30.71827 -29.53232 -28.29916 -26.17580 -25.06211 -23.77848 -21.46021 -21.36471 -20.54356 -20.22855 -18.89702 -17.82490 -17.23156 -16.51534 -16.09164 -16.07634 -15.82942 -15.06395 -14.81938 -14.57706 -14.25932 -14.15428 -13.99043 -13.75949 -13.48880 -13.13663 -12.85205 -12.49700 -12.34735 -12.18296 -12.14260 -11.78199 -11.69177 -11.55138 -11.52469 -11.46603 -11.30733 -11.24438 -11.08110 -10.96703 -10.87735 -10.37686 -10.28284 -8.13267 -7.62379 -5.75332 1.31519 1.39387 1.49467 2.45150 3.24669 3.34464 3.71168 3.91568 3.96258 3.99314 4.02491 4.14815 4.27111 4.38885 4.39364 4.50727 4.54843 4.65613 4.69075 4.77410 4.89395 4.90109 4.92490 4.93535 5.02972 5.07892 5.15557 5.18079 5.25128 5.28986 5.31361 5.33907 5.36417 5.43800 5.48885 5.53319 5.61657 5.64359 5.74325 5.77985 6.18711 6.93987 7.25345 7.51624 7.77995 8.42601 9.17085 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019671 B = 0.009306 C = 0.008116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.041349 B = 3008.202498 C = 3449.046681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.001 3.999 3 Si 0.943 3.057 4 H -0.320 1.320 5 H -0.329 1.329 6 H -0.237 1.237 7 C -0.193 4.193 8 H 0.046 0.954 9 N -0.604 5.604 10 C 0.163 3.837 11 C -0.117 4.117 12 C -0.108 4.108 13 C -0.108 4.108 14 C -0.163 4.163 15 C 0.181 3.819 16 H 0.072 0.928 17 C -0.122 4.122 18 C -0.116 4.116 19 C -0.112 4.112 20 C -0.109 4.109 21 C -0.143 4.143 22 C 0.100 3.900 23 H 0.038 0.962 24 O -0.550 6.550 25 H 0.252 0.748 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.049 0.951 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.034 0.966 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.036 0.964 36 H 0.044 0.956 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.064 -5.089 0.847 15.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.193 4.193 3 Si 0.777 3.223 4 H -0.250 1.250 5 H -0.260 1.260 6 H -0.161 1.161 7 C -0.325 4.325 8 H 0.063 0.937 9 N -0.326 5.326 10 C 0.057 3.943 11 C -0.156 4.156 12 C -0.146 4.146 13 C -0.146 4.146 14 C -0.201 4.201 15 C 0.075 3.925 16 H 0.090 0.910 17 C -0.160 4.160 18 C -0.153 4.153 19 C -0.150 4.150 20 C -0.146 4.146 21 C -0.181 4.181 22 C 0.039 3.961 23 H 0.056 0.944 24 O -0.354 6.354 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 14.896 -4.395 0.626 15.543 hybrid contribution -0.732 0.675 0.388 1.069 sum 14.164 -3.719 1.014 14.679 Atomic orbital electron populations 1.69954 1.07846 1.26199 1.55954 1.26766 0.95163 1.00507 0.96911 0.86117 0.81986 0.81252 0.72946 1.25044 1.26040 1.16060 1.18250 0.83973 0.90858 1.39370 0.93700 1.44280 1.02210 1.84343 1.01805 1.21320 0.95510 0.92392 0.85032 1.22686 0.96447 0.98272 0.98203 1.22257 0.98050 0.95220 0.99031 1.22154 0.98679 0.96366 0.97408 1.23101 0.99300 0.99267 0.98387 1.20552 0.91836 0.91244 0.88848 0.90989 1.21818 0.96824 0.98823 0.98582 1.20533 0.95908 0.99185 0.99718 1.20463 1.01258 0.95294 0.97966 1.21257 0.96197 0.95676 1.01477 1.22061 0.97668 1.01003 0.97360 1.22885 0.81858 0.96646 0.94675 0.94413 1.87206 1.24416 1.33815 1.89986 0.93858 0.91378 0.90403 0.93191 0.94620 0.91084 0.94728 0.89736 0.92652 0.92300 0.94529 0.93718 0.92910 0.91575 0.93016 0.90474 0.89851 0.91417 0.92814 0.91041 0.79649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.17 13.97 21.65 0.30 -60.87 16 2 C 0.00 0.05 4.60 84.86 0.39 0.43 16 3 Si 0.94 49.49 20.83 68.60 1.43 50.92 16 4 H -0.32 -17.13 7.11 99.48 0.71 -16.43 16 5 H -0.33 -17.93 7.11 99.48 0.71 -17.22 16 6 H -0.24 -11.29 6.01 99.48 0.60 -10.69 16 7 C -0.19 -10.63 6.44 84.03 0.54 -10.09 16 8 H 0.05 2.88 6.26 -2.91 -0.02 2.86 16 9 N -0.60 -27.10 1.23 -652.80 -0.80 -27.91 16 10 C 0.16 6.52 3.26 45.71 0.15 6.67 16 11 C -0.12 -4.20 6.36 31.67 0.20 -4.00 16 12 C -0.11 -4.19 6.62 31.89 0.21 -3.98 16 13 C -0.11 -4.18 6.83 31.67 0.22 -3.96 16 14 C -0.16 -6.98 4.26 31.32 0.13 -6.84 16 15 C 0.18 6.83 2.07 44.53 0.09 6.93 16 16 H 0.07 2.41 6.06 -2.38 -0.01 2.40 16 17 C -0.12 -4.81 4.60 30.24 0.14 -4.67 16 18 C -0.12 -3.38 5.27 28.78 0.15 -3.23 16 19 C -0.11 -2.63 5.26 28.74 0.15 -2.48 16 20 C -0.11 -2.33 5.61 30.20 0.17 -2.16 16 21 C -0.14 -3.69 4.88 30.14 0.15 -3.54 16 22 C 0.10 3.34 3.24 31.32 0.10 3.44 16 23 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 24 O -0.55 -22.13 9.84 -148.98 -1.47 -23.59 16 25 H 0.25 15.66 8.31 -92.71 -0.77 14.89 16 26 H 0.07 2.38 7.64 -2.39 -0.02 2.37 16 27 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.05 1.94 8.04 -2.39 -0.02 1.92 16 29 H 0.03 1.71 7.63 -2.39 -0.02 1.69 16 30 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.06 2.82 1.22 -2.39 0.00 2.82 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.04 1.68 2.85 -2.38 -0.01 1.67 16 36 H 0.04 1.92 6.97 -2.39 -0.02 1.90 16 37 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.78 7.46 -2.39 -0.02 1.76 16 39 H 0.05 1.29 7.47 -2.39 -0.02 1.27 16 40 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.07 1.44 6.97 -2.38 -0.02 1.42 16 43 H 0.05 1.58 6.62 -2.39 -0.02 1.56 16 44 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.36 11.14 9.04 -74.06 -0.67 10.47 16 Total: -1.00 -68.97 309.36 2.45 -66.52 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.19 Total: 22.40 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 2.79 Total: -27.47 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -0.50 Total: -88.77 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -1.47 Total: -23.59 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 1.43 Total: 50.92 kcal Total: -68.97 2.45 -66.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088762261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.989 kcal (2) G-P(sol) polarization free energy of solvation -68.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds