Wall clock time and date at job start Mon Mar 30 2020 06:52:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86808 * 119.99605 * 2 1
4 4 H 1.48496 * 109.46986 * 24.86539 * 3 2 1
5 5 H 1.48499 * 109.46613 * 144.86285 * 3 2 1
6 6 H 1.48496 * 109.47328 * 264.86158 * 3 2 1
7 7 C 1.38807 * 120.00399 * 180.28444 * 2 1 3
8 8 H 1.07999 * 120.00444 * 48.53731 * 7 2 1
9 9 N 1.36939 * 119.99980 * 228.55109 * 7 2 1
10 10 C 1.46505 * 120.00034 * 58.76017 * 9 7 2
11 11 C 1.54267 * 110.02936 * 51.73121 * 10 9 7
12 12 C 1.54966 * 104.15814 * 217.13183 * 11 10 9
13 13 C 1.54895 * 102.77558 * 37.89101 * 12 11 10
14 14 C 1.53870 * 110.03322 * 294.51387 * 10 9 7
15 15 C 1.46502 * 119.99770 * 238.76750 * 9 7 2
16 16 H 1.09000 * 109.62371 * 180.38416 * 15 9 7
17 17 C 1.54231 * 109.63094 * 59.99502 * 15 9 7
18 18 C 1.45547 * 112.40762 * 160.30147 * 17 15 9
19 19 C 1.54242 * 112.40247 * 61.93731 * 18 17 15
20 20 C 1.50474 * 108.52226 * 280.01268 * 19 18 17
21 21 C 1.54071 * 112.49585 * 94.15401 * 20 19 18
22 22 C 1.50475 * 109.62709 * 300.96487 * 15 9 7
23 23 H 1.09001 * 108.87140 * 93.08567 * 22 15 9
24 24 O 1.42907 * 108.87777 * 334.64601 * 22 15 9
25 25 H 0.97002 * 119.99721 * 179.97438 * 1 2 3
26 26 H 1.09004 * 110.01416 * 173.12182 * 10 9 7
27 27 H 1.08997 * 110.48697 * 335.77975 * 11 10 9
28 28 H 1.09002 * 110.48331 * 98.43042 * 11 10 9
29 29 H 1.09000 * 110.72170 * 279.57677 * 12 11 10
30 30 H 1.09000 * 110.76433 * 156.22582 * 12 11 10
31 31 H 1.09002 * 110.48637 * 203.40665 * 13 12 11
32 32 H 1.08995 * 110.48505 * 80.75711 * 13 12 11
33 33 H 1.09000 * 110.03471 * 238.57287 * 14 10 9
34 34 H 1.09005 * 110.03024 * 359.97438 * 14 10 9
35 35 H 1.09005 * 108.90008 * 281.05725 * 17 15 9
36 36 H 1.09008 * 108.89812 * 39.64476 * 17 15 9
37 37 H 1.08995 * 108.89615 * 182.68951 * 18 17 15
38 38 H 1.09002 * 108.89165 * 301.27898 * 18 17 15
39 39 H 1.09002 * 109.62956 * 39.72395 * 19 18 17
40 40 H 1.08996 * 109.62690 * 160.30713 * 19 18 17
41 41 H 1.08999 * 108.87545 * 214.92558 * 20 19 18
42 42 H 1.09004 * 108.87724 * 333.37382 * 20 19 18
43 43 H 1.08996 * 108.81277 * 79.13826 * 21 20 19
44 44 H 1.08999 * 108.81251 * 197.42426 * 21 20 19
45 45 H 0.96697 * 113.99862 * 180.02562 * 24 22 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6179 0.0000
4 1 1.3975 2.6816 0.5887
5 1 3.4891 1.4740 0.8058
6 1 2.6062 1.9839 -1.3944
7 6 2.0103 -1.2020 -0.0060
8 1 1.7441 -1.9759 -0.7107
9 7 3.0325 -1.4068 0.8819
10 6 2.7788 -1.3254 2.3226
11 6 1.5833 -2.2242 2.7002
12 6 0.8409 -1.4249 3.8008
13 6 0.9689 0.0377 3.3073
14 6 2.3887 0.1121 2.7086
15 6 4.3798 -1.7072 0.3912
16 1 5.0549 -1.8447 1.2359
17 6 4.8818 -0.5446 -0.4893
18 6 6.3302 -0.5425 -0.6326
19 6 6.8543 -1.8178 -1.3239
20 6 6.9093 -2.9249 -0.3063
21 6 5.6356 -3.7918 -0.3089
22 6 4.3464 -2.9589 -0.4433
23 1 4.2129 -2.6820 -1.4891
24 8 3.2348 -3.7581 -0.0338
25 1 -0.4850 -0.8401 -0.0004
26 1 3.6664 -1.6327 2.8756
27 1 0.9347 -2.3785 1.8379
28 1 1.9329 -3.1795 3.0916
29 1 1.3312 -1.5511 4.7662
30 1 -0.2058 -1.7238 3.8560
31 1 0.8699 0.7320 4.1417
32 1 0.2211 0.2492 2.5430
33 1 3.0864 0.5022 3.4497
34 1 2.3885 0.7492 1.8242
35 1 4.4294 -0.6293 -1.4774
36 1 4.5716 0.3985 -0.0392
37 1 6.6252 0.3253 -1.2224
38 1 6.7826 -0.4672 0.3562
39 1 6.1812 -2.0982 -2.1340
40 1 7.8530 -1.6352 -1.7204
41 1 7.7684 -3.5600 -0.5222
42 1 7.0363 -2.4876 0.6841
43 1 5.6894 -4.4931 -1.1415
44 1 5.5933 -4.3572 0.6221
45 1 3.1433 -4.5859 -0.5251
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000088762263.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:52:02
Heat of formation + Delta-G solvation = -28.751922 kcal
Electronic energy + Delta-G solvation = -23228.188169 eV
Core-core repulsion = 20246.070807 eV
Total energy + Delta-G solvation = -2982.117362 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 267.194 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-39.05106 -37.25315 -35.26364 -33.61705 -31.86995 -31.04552 -29.07191 -27.69091
-26.15606 -24.44925 -23.53553 -22.19800 -19.91889 -19.74507 -18.84524 -18.65776
-17.23150 -16.40694 -15.43148 -14.91750 -14.50858 -14.23334 -14.00091 -13.70997
-13.42137 -13.11568 -12.76395 -12.56067 -12.28148 -12.18903 -12.04839 -11.29665
-11.10869 -10.86525 -10.77394 -10.55098 -10.48772 -10.29700 -10.15769 -10.06897
-10.02545 -9.88208 -9.75657 -9.63546 -9.40854 -9.26124 -8.93120 -8.63502
-7.80392 -6.80822 -5.68141 -3.32889 3.51568 3.58462 3.71861 4.65403
4.88895 4.97145 5.00543 5.14356 5.31471 5.52766 5.54351 5.62738
5.73226 5.74592 5.79135 5.89055 5.96280 5.98058 6.07813 6.22795
6.28240 6.31830 6.36012 6.47947 6.52936 6.57297 6.59094 6.69511
6.73591 6.74983 6.77488 6.84964 6.90380 6.94490 7.04574 7.10237
7.22285 7.38750 7.43917 7.65681 8.51470 8.52040 9.03535 9.29205
9.89126 10.68383 10.99926
Molecular weight = 267.19amu
Principal moments of inertia in cm(-1)
A = 0.019844 B = 0.009128 C = 0.007771
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1410.696298 B = 3066.677225 C = 3602.063799
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.860 5.860
2 C 0.049 3.951
3 Si 1.008 2.992
4 H -0.300 1.300
5 H -0.272 1.272
6 H -0.305 1.305
7 C -0.378 4.378
8 H 0.050 0.950
9 N -0.564 5.564
10 C 0.185 3.815
11 C -0.114 4.114
12 C -0.122 4.122
13 C -0.122 4.122
14 C -0.150 4.150
15 C 0.182 3.818
16 H 0.046 0.954
17 C -0.142 4.142
18 C -0.112 4.112
19 C -0.119 4.119
20 C -0.111 4.111
21 C -0.150 4.150
22 C 0.106 3.894
23 H 0.039 0.961
24 O -0.529 6.529
25 H 0.273 0.727
26 H 0.037 0.963
27 H 0.087 0.913
28 H 0.037 0.963
29 H 0.046 0.954
30 H 0.050 0.950
31 H 0.039 0.961
32 H 0.083 0.917
33 H 0.036 0.964
34 H 0.075 0.925
35 H 0.060 0.940
36 H 0.070 0.930
37 H 0.050 0.950
38 H 0.053 0.947
39 H 0.064 0.936
40 H 0.055 0.945
41 H 0.051 0.949
42 H 0.061 0.939
43 H 0.049 0.951
44 H 0.061 0.939
45 H 0.346 0.654
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.092 -4.353 1.432 11.084
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.492 5.492
2 C -0.162 4.162
3 Si 0.841 3.159
4 H -0.227 1.227
5 H -0.200 1.200
6 H -0.235 1.235
7 C -0.506 4.506
8 H 0.067 0.933
9 N -0.283 5.283
10 C 0.078 3.922
11 C -0.153 4.153
12 C -0.160 4.160
13 C -0.159 4.159
14 C -0.188 4.188
15 C 0.075 3.925
16 H 0.064 0.936
17 C -0.181 4.181
18 C -0.150 4.150
19 C -0.156 4.156
20 C -0.149 4.149
21 C -0.188 4.188
22 C 0.044 3.956
23 H 0.057 0.943
24 O -0.329 6.329
25 H 0.083 0.917
26 H 0.055 0.945
27 H 0.106 0.894
28 H 0.056 0.944
29 H 0.065 0.935
30 H 0.069 0.931
31 H 0.058 0.942
32 H 0.102 0.898
33 H 0.055 0.945
34 H 0.093 0.907
35 H 0.078 0.922
36 H 0.089 0.911
37 H 0.069 0.931
38 H 0.072 0.928
39 H 0.083 0.917
40 H 0.074 0.926
41 H 0.070 0.930
42 H 0.079 0.921
43 H 0.068 0.932
44 H 0.079 0.921
45 H 0.188 0.812
Dipole moment (debyes) X Y Z Total
from point charges 9.769 -2.248 1.862 10.196
hybrid contribution 0.488 -1.943 -0.508 2.067
sum 10.257 -4.191 1.354 11.162
Atomic orbital electron populations
1.70935 1.08175 1.30920 1.39141 1.26454 0.95494 1.00791 0.93491
0.84844 0.77287 0.78313 0.75463 1.22721 1.19964 1.23469 1.19160
1.13151 0.98696 1.19546 0.93281 1.43686 1.02939 1.81874 0.99817
1.20942 0.94332 0.91653 0.85228 1.22577 0.98574 0.96174 0.97981
1.22425 0.99150 0.96684 0.97749 1.22321 0.98826 0.95371 0.99409
1.23158 0.95467 1.00350 0.99868 1.20188 0.89017 0.89764 0.93553
0.93562 1.21095 0.93830 1.01523 1.01666 1.20523 0.97676 0.96918
0.99865 1.21376 1.00331 0.95464 0.98477 1.21235 0.96704 0.97119
0.99852 1.22729 0.96121 0.98680 1.01302 1.22113 0.83289 0.91906
0.98249 0.94264 1.86972 1.48819 1.33969 1.63133 0.91664 0.94452
0.89412 0.94427 0.93502 0.93130 0.94174 0.89821 0.94495 0.90695
0.92168 0.91119 0.93102 0.92823 0.91712 0.92624 0.93026 0.92071
0.93215 0.92067 0.81166
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -24.51 13.00 55.49 0.72 -23.79 16
2 C 0.05 1.33 3.86 -17.43 -0.07 1.26 16
3 Si 1.01 25.29 23.72 -169.99 -4.03 21.26 16
4 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16
5 H -0.27 -6.43 5.13 56.52 0.29 -6.14 16
6 H -0.31 -7.64 7.11 56.52 0.40 -7.24 16
7 C -0.38 -9.97 6.22 -15.06 -0.09 -10.06 16
8 H 0.05 1.47 7.26 -52.49 -0.38 1.08 16
9 N -0.56 -13.13 1.27 -157.58 -0.20 -13.33 16
10 C 0.19 4.13 3.43 -66.81 -0.23 3.90 16
11 C -0.11 -2.48 6.40 -25.03 -0.16 -2.64 16
12 C -0.12 -2.39 6.91 -24.69 -0.17 -2.56 16
13 C -0.12 -2.60 6.72 -25.07 -0.17 -2.76 16
14 C -0.15 -3.34 5.74 -25.62 -0.15 -3.49 16
15 C 0.18 3.69 2.25 -68.55 -0.15 3.54 16
16 H 0.05 0.92 6.44 -51.93 -0.33 0.58 16
17 C -0.14 -2.76 3.69 -29.60 -0.11 -2.87 16
18 C -0.11 -1.73 5.27 -29.60 -0.16 -1.88 16
19 C -0.12 -1.60 5.61 -27.34 -0.15 -1.75 16
20 C -0.11 -1.46 5.31 -27.43 -0.15 -1.61 16
21 C -0.15 -2.18 5.43 -25.62 -0.14 -2.32 16
22 C 0.11 1.93 2.42 -27.44 -0.07 1.87 16
23 H 0.04 0.76 6.63 -51.93 -0.34 0.42 16
24 O -0.53 -10.51 11.11 -35.23 -0.39 -10.91 16
25 H 0.27 7.82 8.73 -40.82 -0.36 7.46 16
26 H 0.04 0.79 7.61 -51.93 -0.40 0.40 16
27 H 0.09 2.21 6.79 -51.93 -0.35 1.86 16
28 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16
29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16
30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16
31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16
32 H 0.08 2.03 7.01 -51.93 -0.36 1.67 16
33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16
34 H 0.08 1.82 0.93 -51.93 -0.05 1.77 16
35 H 0.06 1.25 7.47 -51.93 -0.39 0.86 16
36 H 0.07 1.52 4.34 -51.92 -0.23 1.30 16
37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
38 H 0.05 0.79 7.47 -51.93 -0.39 0.41 16
39 H 0.06 0.92 6.98 -51.93 -0.36 0.55 16
40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
41 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16
42 H 0.06 0.83 6.64 -51.93 -0.34 0.48 16
43 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16
44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16
45 H 0.35 5.40 9.04 45.56 0.41 5.81 16
LS Contribution 312.45 15.07 4.71 4.71
Total: -1.00 -28.02 312.45 -8.16 -36.18
By element:
Atomic # 1 Polarization: 14.27 SS G_CDS: -7.01 Total: 7.27 kcal
Atomic # 6 Polarization: -19.42 SS G_CDS: -1.96 Total: -21.38 kcal
Atomic # 7 Polarization: -37.65 SS G_CDS: 0.52 Total: -37.13 kcal
Atomic # 8 Polarization: -10.51 SS G_CDS: -0.39 Total: -10.91 kcal
Atomic # 14 Polarization: 25.29 SS G_CDS: -4.03 Total: 21.26 kcal
Total LS contribution 4.71 Total: 4.71 kcal
Total: -28.02 -8.16 -36.18 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000088762263.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.427 kcal
(2) G-P(sol) polarization free energy of solvation -28.018 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.591 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.179 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.752 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds