Wall clock time and date at job start Mon Mar 30 2020 06:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86808 * 119.99605 * 2 1 4 4 H 1.48496 * 109.46986 * 24.86539 * 3 2 1 5 5 H 1.48499 * 109.46613 * 144.86285 * 3 2 1 6 6 H 1.48496 * 109.47328 * 264.86158 * 3 2 1 7 7 C 1.38807 * 120.00399 * 180.28444 * 2 1 3 8 8 H 1.07999 * 120.00444 * 48.53731 * 7 2 1 9 9 N 1.36939 * 119.99980 * 228.55109 * 7 2 1 10 10 C 1.46505 * 120.00034 * 58.76017 * 9 7 2 11 11 C 1.54267 * 110.02936 * 51.73121 * 10 9 7 12 12 C 1.54966 * 104.15814 * 217.13183 * 11 10 9 13 13 C 1.54895 * 102.77558 * 37.89101 * 12 11 10 14 14 C 1.53870 * 110.03322 * 294.51387 * 10 9 7 15 15 C 1.46502 * 119.99770 * 238.76750 * 9 7 2 16 16 H 1.09000 * 109.62371 * 180.38416 * 15 9 7 17 17 C 1.54231 * 109.63094 * 59.99502 * 15 9 7 18 18 C 1.45547 * 112.40762 * 160.30147 * 17 15 9 19 19 C 1.54242 * 112.40247 * 61.93731 * 18 17 15 20 20 C 1.50474 * 108.52226 * 280.01268 * 19 18 17 21 21 C 1.54071 * 112.49585 * 94.15401 * 20 19 18 22 22 C 1.50475 * 109.62709 * 300.96487 * 15 9 7 23 23 H 1.09001 * 108.87140 * 93.08567 * 22 15 9 24 24 O 1.42907 * 108.87777 * 334.64601 * 22 15 9 25 25 H 0.97002 * 119.99721 * 179.97438 * 1 2 3 26 26 H 1.09004 * 110.01416 * 173.12182 * 10 9 7 27 27 H 1.08997 * 110.48697 * 335.77975 * 11 10 9 28 28 H 1.09002 * 110.48331 * 98.43042 * 11 10 9 29 29 H 1.09000 * 110.72170 * 279.57677 * 12 11 10 30 30 H 1.09000 * 110.76433 * 156.22582 * 12 11 10 31 31 H 1.09002 * 110.48637 * 203.40665 * 13 12 11 32 32 H 1.08995 * 110.48505 * 80.75711 * 13 12 11 33 33 H 1.09000 * 110.03471 * 238.57287 * 14 10 9 34 34 H 1.09005 * 110.03024 * 359.97438 * 14 10 9 35 35 H 1.09005 * 108.90008 * 281.05725 * 17 15 9 36 36 H 1.09008 * 108.89812 * 39.64476 * 17 15 9 37 37 H 1.08995 * 108.89615 * 182.68951 * 18 17 15 38 38 H 1.09002 * 108.89165 * 301.27898 * 18 17 15 39 39 H 1.09002 * 109.62956 * 39.72395 * 19 18 17 40 40 H 1.08996 * 109.62690 * 160.30713 * 19 18 17 41 41 H 1.08999 * 108.87545 * 214.92558 * 20 19 18 42 42 H 1.09004 * 108.87724 * 333.37382 * 20 19 18 43 43 H 1.08996 * 108.81277 * 79.13826 * 21 20 19 44 44 H 1.08999 * 108.81251 * 197.42426 * 21 20 19 45 45 H 0.96697 * 113.99862 * 180.02562 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 1.3975 2.6816 0.5887 5 1 3.4891 1.4740 0.8058 6 1 2.6062 1.9839 -1.3944 7 6 2.0103 -1.2020 -0.0060 8 1 1.7441 -1.9759 -0.7107 9 7 3.0325 -1.4068 0.8819 10 6 2.7788 -1.3254 2.3226 11 6 1.5833 -2.2242 2.7002 12 6 0.8409 -1.4249 3.8008 13 6 0.9689 0.0377 3.3073 14 6 2.3887 0.1121 2.7086 15 6 4.3798 -1.7072 0.3912 16 1 5.0549 -1.8447 1.2359 17 6 4.8818 -0.5446 -0.4893 18 6 6.3302 -0.5425 -0.6326 19 6 6.8543 -1.8178 -1.3239 20 6 6.9093 -2.9249 -0.3063 21 6 5.6356 -3.7918 -0.3089 22 6 4.3464 -2.9589 -0.4433 23 1 4.2129 -2.6820 -1.4891 24 8 3.2348 -3.7581 -0.0338 25 1 -0.4850 -0.8401 -0.0004 26 1 3.6664 -1.6327 2.8756 27 1 0.9347 -2.3785 1.8379 28 1 1.9329 -3.1795 3.0916 29 1 1.3312 -1.5511 4.7662 30 1 -0.2058 -1.7238 3.8560 31 1 0.8699 0.7320 4.1417 32 1 0.2211 0.2492 2.5430 33 1 3.0864 0.5022 3.4497 34 1 2.3885 0.7492 1.8242 35 1 4.4294 -0.6293 -1.4774 36 1 4.5716 0.3985 -0.0392 37 1 6.6252 0.3253 -1.2224 38 1 6.7826 -0.4672 0.3562 39 1 6.1812 -2.0982 -2.1340 40 1 7.8530 -1.6352 -1.7204 41 1 7.7684 -3.5600 -0.5222 42 1 7.0363 -2.4876 0.6841 43 1 5.6894 -4.4931 -1.1415 44 1 5.5933 -4.3572 0.6221 45 1 3.1433 -4.5859 -0.5251 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088762263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:02 Heat of formation + Delta-G solvation = -28.751922 kcal Electronic energy + Delta-G solvation = -23228.188169 eV Core-core repulsion = 20246.070807 eV Total energy + Delta-G solvation = -2982.117362 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.05106 -37.25315 -35.26364 -33.61705 -31.86995 -31.04552 -29.07191 -27.69091 -26.15606 -24.44925 -23.53553 -22.19800 -19.91889 -19.74507 -18.84524 -18.65776 -17.23150 -16.40694 -15.43148 -14.91750 -14.50858 -14.23334 -14.00091 -13.70997 -13.42137 -13.11568 -12.76395 -12.56067 -12.28148 -12.18903 -12.04839 -11.29665 -11.10869 -10.86525 -10.77394 -10.55098 -10.48772 -10.29700 -10.15769 -10.06897 -10.02545 -9.88208 -9.75657 -9.63546 -9.40854 -9.26124 -8.93120 -8.63502 -7.80392 -6.80822 -5.68141 -3.32889 3.51568 3.58462 3.71861 4.65403 4.88895 4.97145 5.00543 5.14356 5.31471 5.52766 5.54351 5.62738 5.73226 5.74592 5.79135 5.89055 5.96280 5.98058 6.07813 6.22795 6.28240 6.31830 6.36012 6.47947 6.52936 6.57297 6.59094 6.69511 6.73591 6.74983 6.77488 6.84964 6.90380 6.94490 7.04574 7.10237 7.22285 7.38750 7.43917 7.65681 8.51470 8.52040 9.03535 9.29205 9.89126 10.68383 10.99926 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019844 B = 0.009128 C = 0.007771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.696298 B = 3066.677225 C = 3602.063799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.049 3.951 3 Si 1.008 2.992 4 H -0.300 1.300 5 H -0.272 1.272 6 H -0.305 1.305 7 C -0.378 4.378 8 H 0.050 0.950 9 N -0.564 5.564 10 C 0.185 3.815 11 C -0.114 4.114 12 C -0.122 4.122 13 C -0.122 4.122 14 C -0.150 4.150 15 C 0.182 3.818 16 H 0.046 0.954 17 C -0.142 4.142 18 C -0.112 4.112 19 C -0.119 4.119 20 C -0.111 4.111 21 C -0.150 4.150 22 C 0.106 3.894 23 H 0.039 0.961 24 O -0.529 6.529 25 H 0.273 0.727 26 H 0.037 0.963 27 H 0.087 0.913 28 H 0.037 0.963 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.036 0.964 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.092 -4.353 1.432 11.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.162 4.162 3 Si 0.841 3.159 4 H -0.227 1.227 5 H -0.200 1.200 6 H -0.235 1.235 7 C -0.506 4.506 8 H 0.067 0.933 9 N -0.283 5.283 10 C 0.078 3.922 11 C -0.153 4.153 12 C -0.160 4.160 13 C -0.159 4.159 14 C -0.188 4.188 15 C 0.075 3.925 16 H 0.064 0.936 17 C -0.181 4.181 18 C -0.150 4.150 19 C -0.156 4.156 20 C -0.149 4.149 21 C -0.188 4.188 22 C 0.044 3.956 23 H 0.057 0.943 24 O -0.329 6.329 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.106 0.894 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 9.769 -2.248 1.862 10.196 hybrid contribution 0.488 -1.943 -0.508 2.067 sum 10.257 -4.191 1.354 11.162 Atomic orbital electron populations 1.70935 1.08175 1.30920 1.39141 1.26454 0.95494 1.00791 0.93491 0.84844 0.77287 0.78313 0.75463 1.22721 1.19964 1.23469 1.19160 1.13151 0.98696 1.19546 0.93281 1.43686 1.02939 1.81874 0.99817 1.20942 0.94332 0.91653 0.85228 1.22577 0.98574 0.96174 0.97981 1.22425 0.99150 0.96684 0.97749 1.22321 0.98826 0.95371 0.99409 1.23158 0.95467 1.00350 0.99868 1.20188 0.89017 0.89764 0.93553 0.93562 1.21095 0.93830 1.01523 1.01666 1.20523 0.97676 0.96918 0.99865 1.21376 1.00331 0.95464 0.98477 1.21235 0.96704 0.97119 0.99852 1.22729 0.96121 0.98680 1.01302 1.22113 0.83289 0.91906 0.98249 0.94264 1.86972 1.48819 1.33969 1.63133 0.91664 0.94452 0.89412 0.94427 0.93502 0.93130 0.94174 0.89821 0.94495 0.90695 0.92168 0.91119 0.93102 0.92823 0.91712 0.92624 0.93026 0.92071 0.93215 0.92067 0.81166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.51 13.00 55.49 0.72 -23.79 16 2 C 0.05 1.33 3.86 -17.43 -0.07 1.26 16 3 Si 1.01 25.29 23.72 -169.99 -4.03 21.26 16 4 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 5 H -0.27 -6.43 5.13 56.52 0.29 -6.14 16 6 H -0.31 -7.64 7.11 56.52 0.40 -7.24 16 7 C -0.38 -9.97 6.22 -15.06 -0.09 -10.06 16 8 H 0.05 1.47 7.26 -52.49 -0.38 1.08 16 9 N -0.56 -13.13 1.27 -157.58 -0.20 -13.33 16 10 C 0.19 4.13 3.43 -66.81 -0.23 3.90 16 11 C -0.11 -2.48 6.40 -25.03 -0.16 -2.64 16 12 C -0.12 -2.39 6.91 -24.69 -0.17 -2.56 16 13 C -0.12 -2.60 6.72 -25.07 -0.17 -2.76 16 14 C -0.15 -3.34 5.74 -25.62 -0.15 -3.49 16 15 C 0.18 3.69 2.25 -68.55 -0.15 3.54 16 16 H 0.05 0.92 6.44 -51.93 -0.33 0.58 16 17 C -0.14 -2.76 3.69 -29.60 -0.11 -2.87 16 18 C -0.11 -1.73 5.27 -29.60 -0.16 -1.88 16 19 C -0.12 -1.60 5.61 -27.34 -0.15 -1.75 16 20 C -0.11 -1.46 5.31 -27.43 -0.15 -1.61 16 21 C -0.15 -2.18 5.43 -25.62 -0.14 -2.32 16 22 C 0.11 1.93 2.42 -27.44 -0.07 1.87 16 23 H 0.04 0.76 6.63 -51.93 -0.34 0.42 16 24 O -0.53 -10.51 11.11 -35.23 -0.39 -10.91 16 25 H 0.27 7.82 8.73 -40.82 -0.36 7.46 16 26 H 0.04 0.79 7.61 -51.93 -0.40 0.40 16 27 H 0.09 2.21 6.79 -51.93 -0.35 1.86 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 2.03 7.01 -51.93 -0.36 1.67 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.82 0.93 -51.93 -0.05 1.77 16 35 H 0.06 1.25 7.47 -51.93 -0.39 0.86 16 36 H 0.07 1.52 4.34 -51.92 -0.23 1.30 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.79 7.47 -51.93 -0.39 0.41 16 39 H 0.06 0.92 6.98 -51.93 -0.36 0.55 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.83 6.64 -51.93 -0.34 0.48 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.35 5.40 9.04 45.56 0.41 5.81 16 LS Contribution 312.45 15.07 4.71 4.71 Total: -1.00 -28.02 312.45 -8.16 -36.18 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -7.01 Total: 7.27 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -1.96 Total: -21.38 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.52 Total: -37.13 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -0.39 Total: -10.91 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -4.03 Total: 21.26 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.02 -8.16 -36.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088762263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.427 kcal (2) G-P(sol) polarization free energy of solvation -28.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds