Wall clock time and date at job start Mon Mar 30 2020 06:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86808 * 119.99605 * 2 1 4 4 H 1.48496 * 109.46986 * 24.86539 * 3 2 1 5 5 H 1.48499 * 109.46613 * 144.86285 * 3 2 1 6 6 H 1.48496 * 109.47328 * 264.86158 * 3 2 1 7 7 C 1.38807 * 120.00399 * 180.28444 * 2 1 3 8 8 H 1.07999 * 120.00444 * 48.53731 * 7 2 1 9 9 N 1.36939 * 119.99980 * 228.55109 * 7 2 1 10 10 C 1.46505 * 120.00034 * 58.76017 * 9 7 2 11 11 C 1.54267 * 110.02936 * 51.73121 * 10 9 7 12 12 C 1.54966 * 104.15814 * 217.13183 * 11 10 9 13 13 C 1.54895 * 102.77558 * 37.89101 * 12 11 10 14 14 C 1.53870 * 110.03322 * 294.51387 * 10 9 7 15 15 C 1.46502 * 119.99770 * 238.76750 * 9 7 2 16 16 H 1.09000 * 109.62371 * 180.38416 * 15 9 7 17 17 C 1.54231 * 109.63094 * 59.99502 * 15 9 7 18 18 C 1.45547 * 112.40762 * 160.30147 * 17 15 9 19 19 C 1.54242 * 112.40247 * 61.93731 * 18 17 15 20 20 C 1.50474 * 108.52226 * 280.01268 * 19 18 17 21 21 C 1.54071 * 112.49585 * 94.15401 * 20 19 18 22 22 C 1.50475 * 109.62709 * 300.96487 * 15 9 7 23 23 H 1.09001 * 108.87140 * 93.08567 * 22 15 9 24 24 O 1.42907 * 108.87777 * 334.64601 * 22 15 9 25 25 H 0.97002 * 119.99721 * 179.97438 * 1 2 3 26 26 H 1.09004 * 110.01416 * 173.12182 * 10 9 7 27 27 H 1.08997 * 110.48697 * 335.77975 * 11 10 9 28 28 H 1.09002 * 110.48331 * 98.43042 * 11 10 9 29 29 H 1.09000 * 110.72170 * 279.57677 * 12 11 10 30 30 H 1.09000 * 110.76433 * 156.22582 * 12 11 10 31 31 H 1.09002 * 110.48637 * 203.40665 * 13 12 11 32 32 H 1.08995 * 110.48505 * 80.75711 * 13 12 11 33 33 H 1.09000 * 110.03471 * 238.57287 * 14 10 9 34 34 H 1.09005 * 110.03024 * 359.97438 * 14 10 9 35 35 H 1.09005 * 108.90008 * 281.05725 * 17 15 9 36 36 H 1.09008 * 108.89812 * 39.64476 * 17 15 9 37 37 H 1.08995 * 108.89615 * 182.68951 * 18 17 15 38 38 H 1.09002 * 108.89165 * 301.27898 * 18 17 15 39 39 H 1.09002 * 109.62956 * 39.72395 * 19 18 17 40 40 H 1.08996 * 109.62690 * 160.30713 * 19 18 17 41 41 H 1.08999 * 108.87545 * 214.92558 * 20 19 18 42 42 H 1.09004 * 108.87724 * 333.37382 * 20 19 18 43 43 H 1.08996 * 108.81277 * 79.13826 * 21 20 19 44 44 H 1.08999 * 108.81251 * 197.42426 * 21 20 19 45 45 H 0.96697 * 113.99862 * 180.02562 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 1.3975 2.6816 0.5887 5 1 3.4891 1.4740 0.8058 6 1 2.6062 1.9839 -1.3944 7 6 2.0103 -1.2020 -0.0060 8 1 1.7441 -1.9759 -0.7107 9 7 3.0325 -1.4068 0.8819 10 6 2.7788 -1.3254 2.3226 11 6 1.5833 -2.2242 2.7002 12 6 0.8409 -1.4249 3.8008 13 6 0.9689 0.0377 3.3073 14 6 2.3887 0.1121 2.7086 15 6 4.3798 -1.7072 0.3912 16 1 5.0549 -1.8447 1.2359 17 6 4.8818 -0.5446 -0.4893 18 6 6.3302 -0.5425 -0.6326 19 6 6.8543 -1.8178 -1.3239 20 6 6.9093 -2.9249 -0.3063 21 6 5.6356 -3.7918 -0.3089 22 6 4.3464 -2.9589 -0.4433 23 1 4.2129 -2.6820 -1.4891 24 8 3.2348 -3.7581 -0.0338 25 1 -0.4850 -0.8401 -0.0004 26 1 3.6664 -1.6327 2.8756 27 1 0.9347 -2.3785 1.8379 28 1 1.9329 -3.1795 3.0916 29 1 1.3312 -1.5511 4.7662 30 1 -0.2058 -1.7238 3.8560 31 1 0.8699 0.7320 4.1417 32 1 0.2211 0.2492 2.5430 33 1 3.0864 0.5022 3.4497 34 1 2.3885 0.7492 1.8242 35 1 4.4294 -0.6293 -1.4774 36 1 4.5716 0.3985 -0.0392 37 1 6.6252 0.3253 -1.2224 38 1 6.7826 -0.4672 0.3562 39 1 6.1812 -2.0982 -2.1340 40 1 7.8530 -1.6352 -1.7204 41 1 7.7684 -3.5600 -0.5222 42 1 7.0363 -2.4876 0.6841 43 1 5.6894 -4.4931 -1.1415 44 1 5.5933 -4.3572 0.6221 45 1 3.1433 -4.5859 -0.5251 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088762263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:01 Heat of formation + Delta-G solvation = -46.057762 kcal Electronic energy + Delta-G solvation = -23228.938606 eV Core-core repulsion = 20246.070807 eV Total energy + Delta-G solvation = -2982.867800 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.54756 -38.89251 -36.69703 -35.33550 -33.74963 -32.47296 -30.58049 -29.41781 -27.91366 -26.08581 -24.90382 -23.80055 -21.44674 -21.25927 -20.56412 -20.27090 -19.15263 -17.92917 -17.06873 -16.47733 -16.07237 -15.72562 -15.68533 -15.20305 -14.81287 -14.65844 -14.57062 -14.19522 -13.99360 -13.77868 -13.47442 -12.80951 -12.68172 -12.44211 -12.38426 -12.12919 -12.04189 -11.99639 -11.72274 -11.69344 -11.56617 -11.42760 -11.32999 -11.26993 -11.02855 -10.88794 -10.46156 -10.38095 -9.93828 -8.90298 -7.65109 -5.43295 1.46847 1.52747 1.69424 2.58233 2.98307 3.50582 3.62595 3.81453 4.03743 4.03854 4.10234 4.23245 4.28122 4.34711 4.40352 4.43442 4.55077 4.68935 4.71775 4.81700 4.85228 4.95100 4.96161 5.00952 5.04890 5.05239 5.16324 5.20026 5.22918 5.28244 5.35561 5.36119 5.40170 5.46286 5.51783 5.57047 5.65203 5.65799 5.72554 5.84124 6.27759 6.85205 7.14626 7.31765 7.95898 8.60423 8.87528 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019844 B = 0.009128 C = 0.007771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.696298 B = 3066.677225 C = 3602.063799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.017 3.983 3 Si 1.044 2.956 4 H -0.310 1.310 5 H -0.247 1.247 6 H -0.309 1.309 7 C -0.353 4.353 8 H 0.004 0.996 9 N -0.572 5.572 10 C 0.177 3.823 11 C -0.109 4.109 12 C -0.111 4.111 13 C -0.122 4.122 14 C -0.156 4.156 15 C 0.176 3.824 16 H 0.059 0.941 17 C -0.133 4.133 18 C -0.113 4.113 19 C -0.115 4.115 20 C -0.110 4.110 21 C -0.139 4.139 22 C 0.107 3.893 23 H 0.019 0.981 24 O -0.557 6.557 25 H 0.258 0.742 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.035 0.965 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.188 -4.689 2.878 14.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.190 4.190 3 Si 0.875 3.125 4 H -0.239 1.239 5 H -0.173 1.173 6 H -0.238 1.238 7 C -0.482 4.482 8 H 0.022 0.978 9 N -0.292 5.292 10 C 0.071 3.929 11 C -0.148 4.148 12 C -0.149 4.149 13 C -0.160 4.160 14 C -0.194 4.194 15 C 0.069 3.931 16 H 0.077 0.923 17 C -0.172 4.172 18 C -0.151 4.151 19 C -0.152 4.152 20 C -0.148 4.148 21 C -0.177 4.177 22 C 0.047 3.953 23 H 0.037 0.963 24 O -0.360 6.360 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 12.899 -2.601 3.307 13.567 hybrid contribution -0.503 -1.941 -0.979 2.232 sum 12.396 -4.542 2.328 13.406 Atomic orbital electron populations 1.71035 1.08969 1.29894 1.42256 1.27028 0.95349 1.02901 0.93720 0.84366 0.77233 0.75436 0.75452 1.23862 1.17346 1.23828 1.18671 1.13628 0.97033 1.18846 0.97836 1.43733 1.03624 1.81954 0.99906 1.21114 0.95129 0.92009 0.84672 1.22444 0.97976 0.97210 0.97186 1.22381 0.99461 0.94815 0.98233 1.22275 0.97278 0.97201 0.99248 1.23191 0.96637 0.99825 0.99786 1.20388 0.87367 0.90935 0.94365 0.92331 1.21004 0.96608 0.99851 0.99727 1.20504 0.94677 0.98737 1.01169 1.21352 1.01406 0.94402 0.98039 1.21253 0.96597 0.97173 0.99728 1.22585 0.94583 0.98458 1.02088 1.22036 0.85002 0.91826 0.96466 0.96324 1.86901 1.50084 1.35197 1.63847 0.93181 0.92559 0.93977 0.93234 0.90163 0.92864 0.91540 0.93564 0.91817 0.92796 0.94590 0.93341 0.91999 0.91570 0.92909 0.89853 0.90248 0.92079 0.91545 0.91911 0.79273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.09 13.00 21.65 0.28 -52.81 16 2 C 0.02 0.94 3.86 84.86 0.33 1.27 16 3 Si 1.04 52.43 23.72 68.60 1.63 54.06 16 4 H -0.31 -16.01 7.11 99.48 0.71 -15.30 16 5 H -0.25 -11.34 5.13 99.48 0.51 -10.83 16 6 H -0.31 -15.43 7.11 99.48 0.71 -14.72 16 7 C -0.35 -19.33 6.22 84.03 0.52 -18.81 16 8 H 0.00 0.27 7.26 -2.91 -0.02 0.24 16 9 N -0.57 -26.71 1.27 -652.46 -0.83 -27.54 16 10 C 0.18 7.68 3.43 45.71 0.16 7.84 16 11 C -0.11 -4.70 6.40 31.70 0.20 -4.50 16 12 C -0.11 -4.15 6.91 31.91 0.22 -3.93 16 13 C -0.12 -5.07 6.72 31.67 0.21 -4.86 16 14 C -0.16 -6.68 5.74 31.32 0.18 -6.50 16 15 C 0.18 6.96 2.25 44.59 0.10 7.06 16 16 H 0.06 2.17 6.44 -2.39 -0.02 2.16 16 17 C -0.13 -5.04 3.69 28.73 0.11 -4.94 16 18 C -0.11 -3.19 5.27 28.74 0.15 -3.03 16 19 C -0.11 -2.70 5.61 30.20 0.17 -2.53 16 20 C -0.11 -2.45 5.31 30.14 0.16 -2.29 16 21 C -0.14 -3.66 5.43 31.32 0.17 -3.49 16 22 C 0.11 3.88 2.42 30.14 0.07 3.95 16 23 H 0.02 0.74 6.63 -2.39 -0.02 0.73 16 24 O -0.56 -22.43 11.11 -148.98 -1.65 -24.09 16 25 H 0.26 15.80 8.73 -92.71 -0.81 14.99 16 26 H 0.06 2.23 7.61 -2.39 -0.02 2.21 16 27 H 0.04 2.19 6.79 -2.39 -0.02 2.17 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.05 2.27 7.01 -2.39 -0.02 2.26 16 33 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.05 2.57 0.93 -2.38 0.00 2.56 16 35 H 0.04 1.50 7.47 -2.38 -0.02 1.48 16 36 H 0.05 2.03 4.34 -2.38 -0.01 2.02 16 37 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 1.72 7.47 -2.39 -0.02 1.70 16 39 H 0.05 1.38 6.98 -2.39 -0.02 1.36 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.06 1.39 6.64 -2.39 -0.02 1.37 16 43 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.36 11.44 9.04 -74.06 -0.67 10.77 16 Total: -1.00 -63.51 312.45 2.24 -61.26 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.07 Total: 23.88 kcal Atomic # 6 Polarization: -37.51 SS G_CDS: 2.75 Total: -34.76 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -0.55 Total: -80.35 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -1.65 Total: -24.09 kcal Atomic # 14 Polarization: 52.43 SS G_CDS: 1.63 Total: 54.06 kcal Total: -63.51 2.24 -61.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088762263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.207 kcal (2) G-P(sol) polarization free energy of solvation -63.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds