Wall clock time and date at job start Mon Mar 30 2020 06:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00362 * 2 1 4 4 H 1.48503 * 109.47365 * 269.99834 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99995 * 3 2 1 6 6 H 1.48504 * 109.47064 * 150.00134 * 3 2 1 7 7 C 1.38821 * 119.99601 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99901 * 178.45476 * 7 2 1 9 9 N 1.36940 * 119.99973 * 358.45481 * 7 2 1 10 10 C 1.46499 * 119.99829 * 279.43612 * 9 7 2 11 11 C 1.54273 * 110.03165 * 51.36714 * 10 9 7 12 12 C 1.54897 * 104.19422 * 217.10512 * 11 10 9 13 13 C 1.54891 * 102.74737 * 37.94055 * 12 11 10 14 14 C 1.53870 * 110.03237 * 294.20209 * 10 9 7 15 15 C 1.46498 * 120.00188 * 99.15971 * 9 7 2 16 16 H 1.08994 * 108.78257 * 171.34127 * 15 9 7 17 17 C 1.54063 * 108.80995 * 52.94040 * 15 9 7 18 18 C 1.50477 * 112.50009 * 197.41965 * 17 15 9 19 19 C 1.54236 * 108.51665 * 94.14839 * 18 17 15 20 20 C 1.45541 * 112.41339 * 280.01838 * 19 18 17 21 21 C 1.54239 * 112.40462 * 61.93291 * 20 19 18 22 22 C 1.50231 * 108.50674 * 280.05927 * 21 20 19 23 23 H 1.08996 * 108.85833 * 333.31566 * 22 21 20 24 24 O 1.42902 * 108.75613 * 214.94861 * 22 21 20 25 25 H 0.97000 * 119.99576 * 351.04433 * 1 2 3 26 26 H 1.08998 * 110.01860 * 172.80590 * 10 9 7 27 27 H 1.09001 * 110.48489 * 335.78281 * 11 10 9 28 28 H 1.08993 * 110.48576 * 98.43036 * 11 10 9 29 29 H 1.09002 * 110.75579 * 279.62749 * 12 11 10 30 30 H 1.08993 * 110.75403 * 156.25606 * 12 11 10 31 31 H 1.09000 * 110.48705 * 203.37589 * 13 12 11 32 32 H 1.09004 * 110.48551 * 80.73716 * 13 12 11 33 33 H 1.09000 * 110.03350 * 238.56859 * 14 10 9 34 34 H 1.09001 * 110.03820 * 359.94884 * 14 10 9 35 35 H 1.09005 * 108.87973 * 318.19962 * 17 15 9 36 36 H 1.09002 * 108.88165 * 76.64150 * 17 15 9 37 37 H 1.09001 * 109.63313 * 213.86220 * 18 17 15 38 38 H 1.09001 * 109.62660 * 334.44588 * 18 17 15 39 39 H 1.09003 * 108.89886 * 40.77534 * 19 18 17 40 40 H 1.09008 * 108.89433 * 159.35827 * 19 18 17 41 41 H 1.09000 * 108.90088 * 182.69127 * 20 19 18 42 42 H 1.09005 * 108.89396 * 301.28011 * 20 19 18 43 43 H 1.09002 * 109.63026 * 39.72908 * 21 20 19 44 44 H 1.09008 * 109.62611 * 160.11486 * 21 20 19 45 45 H 0.96699 * 114.00304 * 56.93832 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4399 0.7000 7 6 2.0102 -1.2023 0.0005 8 1 3.0899 -1.2025 -0.0247 9 7 1.3258 -2.3879 0.0330 10 6 0.8088 -2.9006 1.3043 11 6 -0.0111 -1.8077 2.0206 12 6 0.3187 -2.0073 3.5208 13 6 1.8237 -2.3729 3.4942 14 6 1.9754 -3.2599 2.2412 15 6 1.1053 -3.1406 -1.2043 16 1 0.6857 -4.1146 -0.9525 17 6 2.4605 -3.3500 -1.9066 18 6 2.3061 -3.7300 -3.3544 19 6 2.3858 -2.4481 -4.2084 20 6 1.1311 -1.7107 -4.2207 21 6 0.7206 -1.2254 -2.8154 22 6 0.0939 -2.3747 -2.0783 23 1 -0.3390 -3.0641 -2.8031 24 8 -0.9502 -1.8703 -1.2430 25 1 -0.4849 0.8298 0.1308 26 1 0.1878 -3.7787 1.1276 27 1 0.3019 -0.8175 1.6897 28 1 -1.0766 -1.9516 1.8420 29 1 -0.2696 -2.8234 3.9405 30 1 0.1550 -1.0852 4.0783 31 1 2.0971 -2.9291 4.3908 32 1 2.4330 -1.4739 3.4012 33 1 1.9200 -4.3122 2.5198 34 1 2.9262 -3.0537 1.7498 35 1 3.0366 -2.4268 -1.8438 36 1 3.0066 -4.1399 -1.3910 37 1 3.1068 -4.4117 -3.6414 38 1 1.3399 -4.2112 -3.5056 39 1 3.1693 -1.8050 -3.8076 40 1 2.6431 -2.7213 -5.2319 41 1 1.2362 -0.8460 -4.8760 42 1 0.3457 -2.3569 -4.6129 43 1 1.6023 -0.8814 -2.2747 44 1 0.0042 -0.4087 -2.9048 45 1 -1.6298 -1.3740 -1.7193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088762267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:07 Heat of formation + Delta-G solvation = -40.265794 kcal Electronic energy + Delta-G solvation = -23465.020838 eV Core-core repulsion = 20482.404197 eV Total energy + Delta-G solvation = -2982.616641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.33278 -38.59944 -36.23876 -35.23095 -33.64024 -31.80494 -30.40492 -28.98352 -27.91567 -26.22817 -24.63975 -23.62959 -21.29780 -21.09277 -20.59650 -19.86127 -17.92964 -17.35851 -16.67762 -16.51194 -16.23442 -15.87932 -15.37262 -14.94797 -14.56960 -14.12607 -14.09027 -13.88368 -13.69042 -13.46838 -13.17980 -12.94434 -12.73577 -12.59239 -12.30375 -12.07715 -11.78175 -11.72046 -11.58907 -11.50553 -11.45387 -11.36762 -11.22765 -11.06552 -10.92223 -10.86808 -10.66496 -10.06418 -9.57371 -7.77271 -7.01654 -5.64204 1.43592 1.51419 1.55345 2.59321 3.47547 3.71993 3.85093 4.10017 4.16570 4.21116 4.22616 4.34486 4.44716 4.55822 4.59570 4.70394 4.77493 4.80492 4.85644 4.91971 5.02949 5.06080 5.13626 5.20693 5.26319 5.27917 5.33457 5.38725 5.41502 5.43546 5.48607 5.55753 5.59466 5.63744 5.71386 5.74095 5.84144 5.93921 6.02088 6.08044 6.52628 6.93868 7.57345 7.70557 8.01180 8.86660 9.35843 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017714 B = 0.009893 C = 0.008155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.332237 B = 2829.473491 C = 3432.859098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.039 3.961 3 Si 0.895 3.105 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.282 1.282 7 C -0.267 4.267 8 H 0.016 0.984 9 N -0.567 5.567 10 C 0.187 3.813 11 C -0.125 4.125 12 C -0.127 4.127 13 C -0.106 4.106 14 C -0.125 4.125 15 C 0.181 3.819 16 H 0.027 0.973 17 C -0.111 4.111 18 C -0.108 4.108 19 C -0.110 4.110 20 C -0.114 4.114 21 C -0.127 4.127 22 C 0.118 3.882 23 H 0.014 0.986 24 O -0.522 6.522 25 H 0.239 0.761 26 H 0.020 0.980 27 H 0.107 0.893 28 H 0.014 0.986 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.033 0.967 45 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.194 -5.455 -3.823 6.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.165 4.165 3 Si 0.724 3.276 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.208 1.208 7 C -0.399 4.399 8 H 0.033 0.967 9 N -0.288 5.288 10 C 0.081 3.919 11 C -0.164 4.164 12 C -0.165 4.165 13 C -0.144 4.144 14 C -0.165 4.165 15 C 0.074 3.926 16 H 0.045 0.955 17 C -0.150 4.150 18 C -0.145 4.145 19 C -0.148 4.148 20 C -0.152 4.152 21 C -0.164 4.164 22 C 0.057 3.943 23 H 0.032 0.968 24 O -0.323 6.323 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.125 0.875 28 H 0.033 0.967 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.051 0.949 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.383 -5.631 -3.478 6.761 hybrid contribution -0.097 1.629 -0.312 1.661 sum 1.286 -4.002 -3.790 5.660 Atomic orbital electron populations 1.70366 1.04878 1.24148 1.45838 1.26226 0.95347 0.98883 0.96081 0.86534 0.79566 0.84188 0.77310 1.21429 1.22153 1.20768 1.18009 0.87656 0.83480 1.50706 0.96700 1.43451 1.63609 1.21910 0.99797 1.20964 0.91320 0.92855 0.86807 1.23009 0.96568 1.04781 0.92015 1.22530 0.96336 0.99588 0.98009 1.22135 0.96123 0.98823 0.97331 1.22533 0.99947 0.97686 0.96325 1.20908 0.91917 0.91614 0.88136 0.95450 1.21520 0.97621 1.00555 0.95279 1.21297 1.01872 0.97150 0.94228 1.20429 0.97560 0.96631 1.00148 1.20489 0.98377 0.99545 0.96766 1.21883 1.01984 0.97472 0.95098 1.21709 0.89062 0.93046 0.90476 0.96801 1.86929 1.35614 1.73390 1.36359 0.95033 0.96182 0.87506 0.96745 0.92264 0.93201 0.91246 0.93683 0.92830 0.93407 0.92764 0.93704 0.90754 0.92066 0.93594 0.90942 0.92823 0.92267 0.91027 0.94856 0.81075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.42 7.52 21.65 0.16 -41.26 16 2 C 0.04 1.96 2.71 84.86 0.23 2.20 16 3 Si 0.90 41.63 29.56 68.60 2.03 43.66 16 4 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 7 C -0.27 -13.38 5.03 84.04 0.42 -12.96 16 8 H 0.02 0.84 7.57 -2.91 -0.02 0.82 16 9 N -0.57 -26.42 1.41 -646.32 -0.91 -27.33 16 10 C 0.19 8.42 3.42 45.72 0.16 8.58 16 11 C -0.12 -5.77 5.57 31.67 0.18 -5.59 16 12 C -0.13 -4.83 6.91 31.89 0.22 -4.61 16 13 C -0.11 -3.91 6.83 31.67 0.22 -3.69 16 14 C -0.13 -4.98 6.33 31.32 0.20 -4.79 16 15 C 0.18 7.60 2.64 45.71 0.12 7.72 16 16 H 0.03 1.16 7.59 -2.39 -0.02 1.14 16 17 C -0.11 -4.07 4.77 30.14 0.14 -3.93 16 18 C -0.11 -3.14 5.61 30.20 0.17 -2.97 16 19 C -0.11 -3.18 5.26 28.74 0.15 -3.03 16 20 C -0.11 -3.57 5.26 28.74 0.15 -3.42 16 21 C -0.13 -5.03 4.22 30.12 0.13 -4.91 16 22 C 0.12 4.80 2.56 30.06 0.08 4.87 16 23 H 0.01 0.54 6.62 -2.39 -0.02 0.52 16 24 O -0.52 -23.63 9.66 -148.98 -1.44 -25.07 16 25 H 0.24 12.22 8.34 -92.71 -0.77 11.45 16 26 H 0.02 0.92 7.63 -2.39 -0.02 0.90 16 27 H 0.11 5.56 3.71 -2.39 -0.01 5.55 16 28 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.05 2.05 7.58 -2.39 -0.02 2.03 16 35 H 0.05 2.26 5.21 -2.38 -0.01 2.25 16 36 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 1.75 6.98 -2.39 -0.02 1.73 16 39 H 0.05 1.46 7.47 -2.39 -0.02 1.44 16 40 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.06 1.70 7.46 -2.38 -0.02 1.68 16 43 H 0.07 3.31 4.33 -2.39 -0.01 3.30 16 44 H 0.03 1.40 7.79 -2.38 -0.02 1.38 16 45 H 0.35 14.10 8.83 -74.06 -0.65 13.44 16 Total: -1.00 -53.20 315.12 2.71 -50.50 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.31 Total: 26.04 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: 2.56 Total: -26.53 kcal Atomic # 7 Polarization: -67.84 SS G_CDS: -0.75 Total: -68.59 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -1.44 Total: -25.07 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -53.20 2.71 -50.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088762267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.232 kcal (2) G-P(sol) polarization free energy of solvation -53.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds