Wall clock time and date at job start Mon Mar 30 2020 06:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99935 * 2 1 4 4 H 1.48501 * 109.47067 * 270.00109 * 3 2 1 5 5 H 1.48495 * 109.47090 * 30.00219 * 3 2 1 6 6 H 1.48498 * 109.46782 * 149.99830 * 3 2 1 7 7 C 1.37876 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00371 * 181.81097 * 7 2 1 9 9 C 1.50705 * 119.99617 * 1.81502 * 7 2 1 10 10 C 1.52997 * 115.55164 * 84.69085 * 9 7 2 11 11 N 1.46894 * 109.47119 * 56.83580 * 10 9 7 12 12 C 1.46905 * 110.99787 * 185.16033 * 11 10 9 13 13 C 1.53008 * 109.46999 * 183.50754 * 12 11 10 14 14 H 1.08995 * 109.46991 * 54.49431 * 13 12 11 15 15 C 1.53001 * 109.47004 * 294.49740 * 13 12 11 16 16 C 1.52999 * 109.47129 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47001 * 59.99653 * 16 15 13 18 18 C 1.53001 * 109.47462 * 300.00143 * 17 16 15 19 19 C 1.52995 * 109.47165 * 174.49806 * 13 12 11 20 20 H 1.09004 * 109.46747 * 300.00184 * 19 13 12 21 21 C 1.53000 * 109.47369 * 59.99654 * 19 13 12 22 22 O 1.42891 * 109.47415 * 184.99858 * 21 19 13 23 23 C 1.52999 * 117.49424 * 230.36162 * 9 7 2 24 24 C 1.53001 * 117.49459 * 299.01676 * 9 7 2 25 25 H 0.97001 * 119.99650 * 5.02175 * 1 2 3 26 26 H 1.09000 * 109.47180 * 296.83208 * 10 9 7 27 27 H 1.08999 * 109.47072 * 176.83561 * 10 9 7 28 28 H 1.00902 * 111.00185 * 61.20987 * 11 10 9 29 29 H 1.08995 * 109.47222 * 63.51194 * 12 11 10 30 30 H 1.08992 * 109.47372 * 303.50381 * 12 11 10 31 31 H 1.09001 * 109.46878 * 300.00092 * 15 13 12 32 32 H 1.09003 * 109.46936 * 60.00193 * 15 13 12 33 33 H 1.08995 * 109.47430 * 180.02562 * 16 15 13 34 34 H 1.09005 * 109.46979 * 300.00220 * 16 15 13 35 35 H 1.09007 * 109.46790 * 180.02562 * 17 16 15 36 36 H 1.08998 * 109.47062 * 60.00761 * 17 16 15 37 37 H 1.09001 * 109.46878 * 299.99938 * 18 17 16 38 38 H 1.08993 * 109.47088 * 179.97438 * 18 17 16 39 39 H 1.09000 * 109.47072 * 305.00574 * 21 19 13 40 40 H 1.09004 * 109.46588 * 65.00201 * 21 19 13 41 41 H 0.96703 * 114.00621 * 180.02562 * 22 21 19 42 42 H 1.09001 * 117.49785 * 214.99860 * 23 9 7 43 43 H 1.09000 * 117.50579 * 0.02562 * 23 9 7 44 44 H 1.08996 * 117.50424 * 359.97438 * 24 9 7 45 45 H 1.09002 * 117.49330 * 145.00284 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0841 -1.1943 0.0290 9 6 1.2516 -2.4988 -0.0425 10 6 0.8490 -2.9839 -1.4365 11 7 2.0468 -3.1025 -2.2785 12 6 1.6869 -3.4484 -3.6602 13 6 2.9605 -3.6487 -4.4841 14 1 3.5969 -4.3865 -3.9956 15 6 3.7114 -2.3201 -4.5935 16 6 4.9846 -2.5202 -5.4179 17 6 4.6134 -3.0131 -6.8179 18 6 3.8626 -4.3417 -6.7085 19 6 2.5899 -4.1418 -5.8842 20 1 2.0550 -5.0883 -5.8062 21 6 1.6965 -3.1061 -6.5698 22 8 1.2556 -3.6167 -7.8295 23 6 1.6196 -3.5604 0.9960 24 6 0.2961 -2.8004 1.1139 25 1 -0.4850 0.8369 -0.0735 26 1 0.1591 -2.2690 -1.8848 27 1 0.3633 -3.9564 -1.3566 28 1 2.6938 -3.7748 -1.8943 29 1 1.0963 -2.6419 -4.0946 30 1 1.1033 -4.3689 -3.6640 31 1 3.0749 -1.5823 -5.0819 32 1 3.9754 -1.9688 -3.5959 33 1 5.5198 -1.5739 -5.4954 34 1 5.6212 -3.2583 -4.9298 35 1 5.5206 -3.1561 -7.4051 36 1 3.9769 -2.2751 -7.3060 37 1 4.4992 -5.0797 -6.2205 38 1 3.5978 -4.6925 -7.7059 39 1 0.8321 -2.8977 -5.9394 40 1 2.2610 -2.1871 -6.7278 41 1 0.6837 -3.0112 -8.3210 42 1 1.5749 -4.6044 0.6861 43 1 2.4060 -3.3150 1.7098 44 1 0.2125 -2.0554 1.9051 45 1 -0.6193 -3.3445 0.8813 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089531191.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:03 Heat of formation + Delta-G solvation = -51.405419 kcal Electronic energy + Delta-G solvation = -21423.993704 eV Core-core repulsion = 18440.894013 eV Total energy + Delta-G solvation = -2983.099691 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.61817 -36.95735 -36.11654 -34.40258 -31.78808 -31.30014 -30.55977 -26.53194 -25.52554 -24.90514 -23.13582 -21.98719 -21.10137 -20.69987 -19.00717 -18.37567 -17.45166 -16.10427 -15.66951 -15.11360 -14.66030 -14.47193 -14.33245 -13.96661 -13.73517 -13.37988 -13.22713 -12.97068 -12.58775 -12.02062 -11.96740 -11.91407 -11.63565 -11.35797 -11.14977 -11.01621 -10.85351 -10.79462 -10.64348 -10.41609 -10.14966 -10.07152 -9.95996 -9.80019 -9.63502 -9.28869 -8.84466 -8.28657 -7.98330 -7.45540 -5.89245 -3.91392 3.37642 3.43749 3.47014 4.21028 4.51815 4.66704 4.75404 4.89599 5.07529 5.22793 5.28653 5.37142 5.40350 5.45861 5.50989 5.55592 5.67921 5.73219 5.73838 5.81531 5.88797 6.04707 6.07899 6.18692 6.22321 6.23875 6.29649 6.36304 6.37589 6.47411 6.54898 6.63642 6.68988 6.78233 6.79524 6.95936 7.18528 7.54686 7.58818 7.59188 8.01559 8.03683 8.23430 8.60941 9.06900 9.71331 11.20233 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019186 B = 0.005089 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.060676 B = 5500.402443 C = 5999.901380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.460 4.460 8 H 0.058 0.942 9 C 0.049 3.951 10 C 0.109 3.891 11 N -0.663 5.663 12 C 0.061 3.939 13 C -0.075 4.075 14 H 0.071 0.929 15 C -0.110 4.110 16 C -0.121 4.121 17 C -0.121 4.121 18 C -0.108 4.108 19 C -0.079 4.079 20 H 0.071 0.929 21 C 0.073 3.927 22 O -0.577 6.577 23 C -0.218 4.218 24 C -0.154 4.154 25 H 0.256 0.744 26 H 0.070 0.930 27 H -0.007 1.007 28 H 0.329 0.671 29 H 0.067 0.933 30 H 0.015 0.985 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.375 0.625 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.890 -6.704 -12.821 15.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.134 4.134 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.499 4.499 8 H 0.076 0.924 9 C 0.048 3.952 10 C -0.020 4.020 11 N -0.292 5.292 12 C -0.068 4.068 13 C -0.094 4.094 14 H 0.090 0.910 15 C -0.147 4.147 16 C -0.159 4.159 17 C -0.158 4.158 18 C -0.145 4.145 19 C -0.098 4.098 20 H 0.090 0.910 21 C -0.005 4.005 22 O -0.382 6.382 23 C -0.255 4.255 24 C -0.192 4.192 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.011 0.989 28 H 0.146 0.854 29 H 0.086 0.914 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.221 0.779 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.125 -6.400 -12.679 15.099 hybrid contribution -0.328 0.492 -0.072 0.595 sum 4.797 -5.909 -12.751 14.849 Atomic orbital electron populations 1.70001 1.05746 1.26267 1.50739 1.24911 0.94739 0.98593 0.95155 0.86682 0.79850 0.83993 0.77965 1.20803 1.21661 1.20060 1.20257 0.92167 0.88281 1.49153 0.92404 1.18860 0.97567 0.93199 0.85585 1.21480 0.90327 0.95701 0.94491 1.60258 1.15830 1.52848 1.00282 1.22059 0.95595 0.98283 0.90908 1.21128 0.96907 0.98097 0.93257 0.91043 1.21537 0.95434 0.96352 1.01405 1.21588 0.98168 1.00716 0.95409 1.21585 0.99526 0.97398 0.97288 1.21449 0.95770 0.97333 0.99992 1.21086 0.95699 0.98535 0.94473 0.91037 1.22485 0.97155 0.96584 0.84240 1.86434 1.70779 1.47581 1.33399 1.23021 1.00003 0.95477 1.07029 1.22483 0.90884 1.01493 1.04378 0.93427 0.91159 0.98909 0.85418 0.91432 0.96671 0.92373 0.89708 0.92364 0.92264 0.92649 0.92073 0.92300 0.91720 0.93307 0.92873 0.77889 0.92294 0.90619 0.89871 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.32 12.73 55.43 0.71 -24.62 16 2 C 0.07 1.84 5.43 -17.82 -0.10 1.75 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.46 -12.43 8.57 -34.44 -0.30 -12.73 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.05 1.18 1.65 -155.66 -0.26 0.92 16 10 C 0.11 2.40 5.55 -3.83 -0.02 2.38 16 11 N -0.66 -12.62 5.71 -113.78 -0.65 -13.27 16 12 C 0.06 0.97 4.56 -3.82 -0.02 0.95 16 13 C -0.07 -1.00 2.07 -90.62 -0.19 -1.19 16 14 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 15 C -0.11 -1.52 4.82 -26.73 -0.13 -1.65 16 16 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 17 C -0.12 -1.30 5.65 -26.73 -0.15 -1.45 16 18 C -0.11 -1.21 5.35 -26.76 -0.14 -1.35 16 19 C -0.08 -0.96 2.43 -90.65 -0.22 -1.18 16 20 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 21 C 0.07 0.86 5.50 37.16 0.20 1.07 16 22 O -0.58 -6.58 13.19 -35.23 -0.46 -7.05 16 23 C -0.22 -4.76 9.94 -26.69 -0.27 -5.03 16 24 C -0.15 -3.67 9.26 -26.69 -0.25 -3.92 16 25 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 26 H 0.07 1.73 8.13 -51.93 -0.42 1.31 16 27 H -0.01 -0.15 8.10 -51.93 -0.42 -0.57 16 28 H 0.33 5.94 8.73 -39.29 -0.34 5.60 16 29 H 0.07 1.13 6.62 -51.93 -0.34 0.79 16 30 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.83 6.54 -51.93 -0.34 0.49 16 32 H 0.08 1.38 7.77 -51.93 -0.40 0.98 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 36 H 0.06 0.67 6.32 -51.93 -0.33 0.35 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.74 7.82 -51.93 -0.41 0.34 16 39 H 0.05 0.61 6.30 -51.93 -0.33 0.28 16 40 H 0.05 0.62 4.82 -51.93 -0.25 0.37 16 41 H 0.37 2.70 9.12 45.56 0.42 3.11 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 44 H 0.08 2.13 8.14 -51.93 -0.42 1.71 16 45 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 345.14 15.07 5.20 5.20 Total: -1.00 -28.85 345.14 -9.58 -38.43 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -7.36 Total: 7.87 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -1.99 Total: -23.01 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.06 Total: -37.89 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.46 Total: -7.05 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.85 -9.58 -38.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089531191.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.977 kcal (2) G-P(sol) polarization free energy of solvation -28.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds