Wall clock time and date at job start Mon Mar 30 2020 06:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99935 * 2 1 4 4 H 1.48501 * 109.47067 * 270.00109 * 3 2 1 5 5 H 1.48495 * 109.47090 * 30.00219 * 3 2 1 6 6 H 1.48498 * 109.46782 * 149.99830 * 3 2 1 7 7 C 1.37876 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00371 * 181.81097 * 7 2 1 9 9 C 1.50705 * 119.99617 * 1.81502 * 7 2 1 10 10 C 1.52997 * 115.55164 * 84.69085 * 9 7 2 11 11 N 1.46894 * 109.47119 * 56.83580 * 10 9 7 12 12 C 1.46905 * 110.99787 * 185.16033 * 11 10 9 13 13 C 1.53008 * 109.46999 * 183.50754 * 12 11 10 14 14 H 1.08995 * 109.46991 * 54.49431 * 13 12 11 15 15 C 1.53001 * 109.47004 * 294.49740 * 13 12 11 16 16 C 1.52999 * 109.47129 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47001 * 59.99653 * 16 15 13 18 18 C 1.53001 * 109.47462 * 300.00143 * 17 16 15 19 19 C 1.52995 * 109.47165 * 174.49806 * 13 12 11 20 20 H 1.09004 * 109.46747 * 300.00184 * 19 13 12 21 21 C 1.53000 * 109.47369 * 59.99654 * 19 13 12 22 22 O 1.42891 * 109.47415 * 184.99858 * 21 19 13 23 23 C 1.52999 * 117.49424 * 230.36162 * 9 7 2 24 24 C 1.53001 * 117.49459 * 299.01676 * 9 7 2 25 25 H 0.97001 * 119.99650 * 5.02175 * 1 2 3 26 26 H 1.09000 * 109.47180 * 296.83208 * 10 9 7 27 27 H 1.08999 * 109.47072 * 176.83561 * 10 9 7 28 28 H 1.00902 * 111.00185 * 61.20987 * 11 10 9 29 29 H 1.08995 * 109.47222 * 63.51194 * 12 11 10 30 30 H 1.08992 * 109.47372 * 303.50381 * 12 11 10 31 31 H 1.09001 * 109.46878 * 300.00092 * 15 13 12 32 32 H 1.09003 * 109.46936 * 60.00193 * 15 13 12 33 33 H 1.08995 * 109.47430 * 180.02562 * 16 15 13 34 34 H 1.09005 * 109.46979 * 300.00220 * 16 15 13 35 35 H 1.09007 * 109.46790 * 180.02562 * 17 16 15 36 36 H 1.08998 * 109.47062 * 60.00761 * 17 16 15 37 37 H 1.09001 * 109.46878 * 299.99938 * 18 17 16 38 38 H 1.08993 * 109.47088 * 179.97438 * 18 17 16 39 39 H 1.09000 * 109.47072 * 305.00574 * 21 19 13 40 40 H 1.09004 * 109.46588 * 65.00201 * 21 19 13 41 41 H 0.96703 * 114.00621 * 180.02562 * 22 21 19 42 42 H 1.09001 * 117.49785 * 214.99860 * 23 9 7 43 43 H 1.09000 * 117.50579 * 0.02562 * 23 9 7 44 44 H 1.08996 * 117.50424 * 359.97438 * 24 9 7 45 45 H 1.09002 * 117.49330 * 145.00284 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0841 -1.1943 0.0290 9 6 1.2516 -2.4988 -0.0425 10 6 0.8490 -2.9839 -1.4365 11 7 2.0468 -3.1025 -2.2785 12 6 1.6869 -3.4484 -3.6602 13 6 2.9605 -3.6487 -4.4841 14 1 3.5969 -4.3865 -3.9956 15 6 3.7114 -2.3201 -4.5935 16 6 4.9846 -2.5202 -5.4179 17 6 4.6134 -3.0131 -6.8179 18 6 3.8626 -4.3417 -6.7085 19 6 2.5899 -4.1418 -5.8842 20 1 2.0550 -5.0883 -5.8062 21 6 1.6965 -3.1061 -6.5698 22 8 1.2556 -3.6167 -7.8295 23 6 1.6196 -3.5604 0.9960 24 6 0.2961 -2.8004 1.1139 25 1 -0.4850 0.8369 -0.0735 26 1 0.1591 -2.2690 -1.8848 27 1 0.3633 -3.9564 -1.3566 28 1 2.6938 -3.7748 -1.8943 29 1 1.0963 -2.6419 -4.0946 30 1 1.1033 -4.3689 -3.6640 31 1 3.0749 -1.5823 -5.0819 32 1 3.9754 -1.9688 -3.5959 33 1 5.5198 -1.5739 -5.4954 34 1 5.6212 -3.2583 -4.9298 35 1 5.5206 -3.1561 -7.4051 36 1 3.9769 -2.2751 -7.3060 37 1 4.4992 -5.0797 -6.2205 38 1 3.5978 -4.6925 -7.7059 39 1 0.8321 -2.8977 -5.9394 40 1 2.2610 -2.1871 -6.7278 41 1 0.6837 -3.0112 -8.3210 42 1 1.5749 -4.6044 0.6861 43 1 2.4060 -3.3150 1.7098 44 1 0.2125 -2.0554 1.9051 45 1 -0.6193 -3.3445 0.8813 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089531191.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:02 Heat of formation + Delta-G solvation = -69.558963 kcal Electronic energy + Delta-G solvation = -21424.780901 eV Core-core repulsion = 18440.894013 eV Total energy + Delta-G solvation = -2983.886888 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.64960 -38.71254 -37.09023 -35.81785 -33.86308 -32.38993 -31.66395 -28.01178 -27.18863 -26.22942 -24.57745 -23.01957 -22.83108 -21.92121 -20.87801 -19.42890 -18.37790 -17.94921 -16.85294 -16.57548 -16.30061 -15.79830 -15.64141 -15.37896 -15.04487 -14.66164 -14.60353 -14.28972 -13.85215 -13.59145 -13.21429 -13.02278 -12.94826 -12.82003 -12.70850 -12.65913 -12.48981 -12.30440 -11.99268 -11.97146 -11.80782 -11.32597 -11.07692 -10.93173 -10.85419 -10.76786 -10.58243 -10.29735 -9.87776 -8.98174 -7.99559 -6.06021 1.43679 1.45057 1.53314 2.49930 3.26499 3.30310 3.38923 3.64343 3.78723 3.85112 4.02571 4.22847 4.28067 4.38052 4.43037 4.46797 4.50953 4.58911 4.61720 4.69445 4.71190 4.76270 4.81814 4.83967 4.86487 4.90915 5.01224 5.11273 5.13605 5.18848 5.30312 5.31176 5.33558 5.37744 5.48193 5.62039 5.66875 5.68208 5.73396 5.89988 6.39003 6.55578 6.79904 6.89205 6.97144 7.58844 9.09199 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019186 B = 0.005089 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.060676 B = 5500.402443 C = 5999.901380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.021 3.979 3 Si 0.942 3.058 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.271 1.271 7 C -0.467 4.467 8 H 0.048 0.952 9 C 0.022 3.978 10 C 0.124 3.876 11 N -0.671 5.671 12 C 0.066 3.934 13 C -0.064 4.064 14 H 0.078 0.922 15 C -0.107 4.107 16 C -0.116 4.116 17 C -0.116 4.116 18 C -0.103 4.103 19 C -0.077 4.077 20 H 0.068 0.932 21 C 0.076 3.924 22 O -0.587 6.587 23 C -0.189 4.189 24 C -0.163 4.163 25 H 0.254 0.746 26 H 0.036 0.964 27 H 0.006 0.994 28 H 0.337 0.663 29 H 0.054 0.946 30 H 0.022 0.978 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.038 0.962 40 H 0.055 0.945 41 H 0.393 0.607 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.176 -7.684 -13.934 17.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.177 4.177 3 Si 0.769 3.231 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.195 1.195 7 C -0.505 4.505 8 H 0.066 0.934 9 C 0.021 3.979 10 C -0.005 4.005 11 N -0.302 5.302 12 C -0.064 4.064 13 C -0.083 4.083 14 H 0.096 0.904 15 C -0.145 4.145 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.141 4.141 19 C -0.096 4.096 20 H 0.087 0.913 21 C -0.002 4.002 22 O -0.394 6.394 23 C -0.226 4.226 24 C -0.202 4.202 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.024 0.976 28 H 0.155 0.845 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.242 0.758 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.420 -7.383 -13.803 16.919 hybrid contribution -0.741 0.778 0.271 1.108 sum 5.678 -6.605 -13.532 16.093 Atomic orbital electron populations 1.70107 1.06852 1.26691 1.52001 1.25539 0.95439 1.01416 0.95305 0.85809 0.78832 0.80615 0.77867 1.20597 1.21648 1.19534 1.20479 0.91891 0.89785 1.48358 0.93358 1.18999 0.98300 0.93495 0.87079 1.21139 0.90798 0.95184 0.93415 1.60144 1.14907 1.53795 1.01306 1.22061 0.96956 0.97945 0.89401 1.21023 0.95515 0.98040 0.93709 0.90359 1.21466 0.96528 0.96294 1.00186 1.21543 0.96950 1.01212 0.95681 1.21556 1.00137 0.97026 0.96659 1.21416 0.95178 0.97734 0.99754 1.21044 0.96473 0.98285 0.93767 0.91337 1.22385 0.96752 0.96572 0.84455 1.86386 1.71340 1.48546 1.33160 1.22999 0.98267 0.96292 1.05051 1.22382 0.92311 1.01812 1.03654 0.93689 0.94512 0.97593 0.84536 0.92767 0.96004 0.93211 0.92445 0.92021 0.91667 0.91064 0.92328 0.91476 0.91684 0.94382 0.92677 0.75822 0.89361 0.90671 0.92484 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.17 12.73 21.45 0.27 -52.90 16 2 C 0.02 1.17 5.43 84.65 0.46 1.63 16 3 Si 0.94 44.47 29.54 68.60 2.03 46.50 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.47 -25.36 8.57 25.60 0.22 -25.14 16 8 H 0.05 2.66 7.81 -2.91 -0.02 2.63 16 9 C 0.02 1.06 1.65 -52.93 -0.09 0.98 16 10 C 0.12 5.45 5.55 86.30 0.48 5.93 16 11 N -0.67 -25.26 5.71 -513.90 -2.93 -28.20 16 12 C 0.07 2.05 4.56 86.30 0.39 2.44 16 13 C -0.06 -1.63 2.07 -10.79 -0.02 -1.65 16 14 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 15 C -0.11 -2.89 4.82 30.59 0.15 -2.74 16 16 C -0.12 -2.51 5.92 30.59 0.18 -2.33 16 17 C -0.12 -2.23 5.65 30.59 0.17 -2.06 16 18 C -0.10 -2.06 5.35 30.58 0.16 -1.89 16 19 C -0.08 -1.74 2.43 -10.81 -0.03 -1.77 16 20 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 21 C 0.08 1.72 5.50 71.98 0.40 2.12 16 22 O -0.59 -12.39 13.19 -148.98 -1.96 -14.36 16 23 C -0.19 -7.95 9.94 30.62 0.30 -7.64 16 24 C -0.16 -7.76 9.26 30.62 0.28 -7.47 16 25 H 0.25 14.24 8.32 -92.71 -0.77 13.47 16 26 H 0.04 1.84 8.13 -2.39 -0.02 1.82 16 27 H 0.01 0.25 8.10 -2.39 -0.02 0.23 16 28 H 0.34 11.73 8.73 -89.69 -0.78 10.95 16 29 H 0.05 1.84 6.62 -2.39 -0.02 1.82 16 30 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 1.40 6.54 -2.39 -0.02 1.39 16 32 H 0.06 1.86 7.77 -2.39 -0.02 1.84 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.06 1.16 6.32 -2.39 -0.02 1.15 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 1.32 7.82 -2.39 -0.02 1.31 16 39 H 0.04 0.94 6.30 -2.39 -0.02 0.92 16 40 H 0.06 1.23 4.82 -2.38 -0.01 1.21 16 41 H 0.39 5.00 9.12 -74.06 -0.68 4.32 16 42 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 43 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 44 H 0.06 2.97 8.14 -2.39 -0.02 2.95 16 45 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -61.03 345.14 -0.03 -61.06 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: -0.49 Total: 27.50 kcal Atomic # 6 Polarization: -42.67 SS G_CDS: 3.06 Total: -39.60 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -2.66 Total: -81.10 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -1.96 Total: -14.36 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -61.03 -0.03 -61.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089531191.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.497 kcal (2) G-P(sol) polarization free energy of solvation -61.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds