Wall clock time and date at job start Mon Mar 30 2020 06:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00067 * 2 1 4 4 H 1.48500 * 109.47184 * 270.00282 * 3 2 1 5 5 H 1.48505 * 109.46942 * 30.00062 * 3 2 1 6 6 H 1.48495 * 109.46986 * 150.00154 * 3 2 1 7 7 C 1.37876 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99978 * 181.81873 * 7 2 1 9 9 C 1.50699 * 119.99758 * 1.81776 * 7 2 1 10 10 C 1.52997 * 115.55068 * 84.69261 * 9 7 2 11 11 N 1.46901 * 109.47264 * 56.84319 * 10 9 7 12 12 C 1.46900 * 110.99707 * 185.17192 * 11 10 9 13 13 C 1.53006 * 109.46568 * 183.48312 * 12 11 10 14 14 H 1.09003 * 109.47111 * 56.95650 * 13 12 11 15 15 C 1.52996 * 109.47073 * 296.95441 * 13 12 11 16 16 C 1.53011 * 109.46861 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47008 * 59.99928 * 16 15 13 18 18 C 1.52996 * 109.47369 * 299.99762 * 17 16 15 19 19 C 1.53005 * 109.46752 * 176.95372 * 13 12 11 20 20 H 1.09003 * 109.47085 * 60.00263 * 19 13 12 21 21 C 1.52996 * 109.47387 * 299.99876 * 19 13 12 22 22 O 1.42898 * 109.47271 * 174.99695 * 21 19 13 23 23 C 1.53004 * 117.49641 * 230.35912 * 9 7 2 24 24 C 1.53004 * 117.50133 * 299.01611 * 9 7 2 25 25 H 0.97006 * 120.00286 * 5.02174 * 1 2 3 26 26 H 1.09000 * 109.47035 * 296.84019 * 10 9 7 27 27 H 1.09005 * 109.46906 * 176.84211 * 10 9 7 28 28 H 1.00898 * 110.99884 * 61.22039 * 11 10 9 29 29 H 1.08997 * 109.47317 * 63.48932 * 12 11 10 30 30 H 1.09000 * 109.47015 * 303.48125 * 12 11 10 31 31 H 1.08997 * 109.47294 * 60.00699 * 15 13 12 32 32 H 1.09003 * 109.47323 * 300.00080 * 15 13 12 33 33 H 1.08995 * 109.46692 * 180.02562 * 16 15 13 34 34 H 1.09003 * 109.47002 * 300.00013 * 16 15 13 35 35 H 1.09003 * 109.47170 * 60.00188 * 17 16 15 36 36 H 1.09004 * 109.46892 * 179.97438 * 17 16 15 37 37 H 1.08997 * 109.47294 * 179.97438 * 18 17 16 38 38 H 1.08993 * 109.47273 * 300.00376 * 18 17 16 39 39 H 1.09000 * 109.47181 * 295.00151 * 21 19 13 40 40 H 1.09006 * 109.46701 * 55.00242 * 21 19 13 41 41 H 0.96697 * 114.00077 * 179.97438 * 22 21 19 42 42 H 1.08999 * 117.49722 * 215.00365 * 23 9 7 43 43 H 1.08999 * 117.50311 * 0.02660 * 23 9 7 44 44 H 1.09005 * 117.49538 * 359.97438 * 24 9 7 45 45 H 1.09000 * 117.49740 * 144.97380 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0840 -1.1943 0.0291 9 6 1.2515 -2.4988 -0.0425 10 6 0.8490 -2.9838 -1.4366 11 7 2.0469 -3.1026 -2.2786 12 6 1.6870 -3.4482 -3.6602 13 6 2.9607 -3.6481 -4.4841 14 1 3.5772 -4.4176 -4.0192 15 6 3.7424 -2.3342 -4.5416 16 6 5.0158 -2.5340 -5.3661 17 6 4.6420 -2.9676 -6.7849 18 6 3.8603 -4.2815 -6.7274 19 6 2.5874 -4.0821 -5.9030 20 1 1.9710 -3.3126 -6.3679 21 6 1.8058 -5.3960 -5.8455 22 8 1.3569 -5.7411 -7.1576 23 6 1.6195 -3.5605 0.9959 24 6 0.2959 -2.8005 1.1137 25 1 -0.4851 0.8369 -0.0735 26 1 0.1592 -2.2688 -1.8850 27 1 0.3631 -3.9563 -1.3567 28 1 2.6936 -3.7751 -1.8944 29 1 1.0964 -2.6416 -4.0945 30 1 1.1035 -4.3688 -3.6642 31 1 4.0084 -2.0251 -3.5308 32 1 3.1260 -1.5647 -5.0065 33 1 5.5728 -1.5980 -5.4066 34 1 5.6324 -3.3035 -4.9015 35 1 4.0254 -2.1980 -7.2494 36 1 5.5491 -3.1094 -7.3723 37 1 3.5936 -4.5902 -7.7381 38 1 4.4768 -5.0510 -6.2629 39 1 2.4514 -6.1864 -5.4628 40 1 0.9455 -5.2785 -5.1865 41 1 0.8531 -6.5656 -7.1968 42 1 1.5748 -4.6045 0.6859 43 1 2.4059 -3.3151 1.7097 44 1 0.2123 -2.0555 1.9050 45 1 -0.6197 -3.3442 0.8810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089531194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:06 Heat of formation + Delta-G solvation = -54.860807 kcal Electronic energy + Delta-G solvation = -21278.005600 eV Core-core repulsion = 18294.756072 eV Total energy + Delta-G solvation = -2983.249528 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.31548 -36.94397 -36.37368 -34.41202 -31.79148 -31.57592 -30.56161 -26.43716 -25.44340 -24.86726 -23.18410 -21.28948 -20.97046 -20.59604 -19.73003 -18.89887 -17.36944 -16.10287 -15.25398 -15.14776 -14.70484 -14.45168 -14.28984 -14.20001 -13.81448 -13.37523 -13.22122 -12.95116 -12.66447 -12.06036 -11.97274 -11.67134 -11.52779 -11.34287 -11.15777 -10.91110 -10.83772 -10.73403 -10.64420 -10.40402 -10.25521 -10.15248 -10.09752 -9.86879 -9.70823 -9.27484 -8.83909 -8.28041 -7.98262 -7.43900 -5.88398 -3.90618 3.39153 3.45204 3.48210 4.14151 4.52938 4.65438 4.72722 4.94963 5.07357 5.13167 5.24361 5.37959 5.41315 5.46830 5.52853 5.59534 5.61498 5.69636 5.74633 5.79443 5.90670 6.01042 6.10871 6.20650 6.21735 6.29367 6.32352 6.36371 6.38383 6.44584 6.53995 6.65174 6.72170 6.78579 6.80676 6.95981 7.18236 7.52131 7.54575 7.58867 8.02112 8.03959 8.23506 8.61336 9.07635 9.72262 11.21100 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018916 B = 0.005115 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.873116 B = 5473.031652 C = 6351.583767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.461 4.461 8 H 0.058 0.942 9 C 0.049 3.951 10 C 0.109 3.891 11 N -0.662 5.662 12 C 0.061 3.939 13 C -0.074 4.074 14 H 0.066 0.934 15 C -0.105 4.105 16 C -0.121 4.121 17 C -0.120 4.120 18 C -0.106 4.106 19 C -0.080 4.080 20 H 0.077 0.923 21 C 0.075 3.925 22 O -0.575 6.575 23 C -0.218 4.218 24 C -0.154 4.154 25 H 0.256 0.744 26 H 0.071 0.929 27 H -0.008 1.008 28 H 0.328 0.672 29 H 0.067 0.933 30 H 0.016 0.984 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.051 0.949 41 H 0.375 0.625 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.027 -10.057 -11.712 16.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.134 4.134 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.499 4.499 8 H 0.076 0.924 9 C 0.048 3.952 10 C -0.020 4.020 11 N -0.292 5.292 12 C -0.069 4.069 13 C -0.093 4.093 14 H 0.084 0.916 15 C -0.142 4.142 16 C -0.159 4.159 17 C -0.157 4.157 18 C -0.144 4.144 19 C -0.099 4.099 20 H 0.095 0.905 21 C -0.003 4.003 22 O -0.380 6.380 23 C -0.255 4.255 24 C -0.192 4.192 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.010 0.990 28 H 0.145 0.855 29 H 0.086 0.914 30 H 0.034 0.966 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.221 0.779 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.210 -8.674 -11.912 15.630 hybrid contribution -0.276 -0.576 0.253 0.687 sum 4.934 -9.250 -11.659 15.679 Atomic orbital electron populations 1.69997 1.05759 1.26300 1.50686 1.24907 0.94737 0.98607 0.95113 0.86680 0.79829 0.83975 0.77998 1.20763 1.21667 1.20064 1.20248 0.92162 0.88273 1.49232 0.92407 1.18860 0.97544 0.93196 0.85573 1.21485 0.90323 0.95661 0.94505 1.60232 1.15841 1.52821 1.00286 1.22088 0.95609 0.98310 0.90903 1.21106 0.96777 0.98268 0.93142 0.91602 1.21460 0.95147 0.96175 1.01462 1.21591 0.98192 1.00843 0.95265 1.21552 0.99461 0.97439 0.97263 1.21471 0.95596 0.97316 1.00014 1.21147 0.96355 0.96031 0.96407 0.90505 1.22410 0.97433 0.96703 0.83725 1.86467 1.75681 1.45821 1.29990 1.23021 1.00016 0.95447 1.07064 1.22484 0.90861 1.01495 1.04405 0.93410 0.91104 0.98990 0.85476 0.91423 0.96571 0.89629 0.92281 0.92313 0.92380 0.92171 0.92598 0.91738 0.92510 0.93991 0.93104 0.77894 0.92333 0.90618 0.89868 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.43 12.73 55.43 0.71 -24.72 16 2 C 0.07 1.86 5.42 -17.82 -0.10 1.77 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.46 -12.47 8.57 -34.44 -0.30 -12.77 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.05 1.19 1.65 -155.66 -0.26 0.93 16 10 C 0.11 2.40 5.55 -3.83 -0.02 2.38 16 11 N -0.66 -12.58 5.60 -113.78 -0.64 -13.21 16 12 C 0.06 0.96 4.84 -3.82 -0.02 0.94 16 13 C -0.07 -0.99 1.84 -90.62 -0.17 -1.15 16 14 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 15 C -0.10 -1.49 5.08 -26.73 -0.14 -1.63 16 16 C -0.12 -1.46 5.92 -26.73 -0.16 -1.61 16 17 C -0.12 -1.32 5.92 -26.74 -0.16 -1.48 16 18 C -0.11 -1.20 5.10 -26.75 -0.14 -1.33 16 19 C -0.08 -0.98 1.95 -90.64 -0.18 -1.16 16 20 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 21 C 0.07 0.83 6.21 37.16 0.23 1.06 16 22 O -0.57 -6.29 13.19 -35.23 -0.46 -6.76 16 23 C -0.22 -4.75 9.94 -26.69 -0.27 -5.01 16 24 C -0.15 -3.67 9.26 -26.69 -0.25 -3.91 16 25 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 26 H 0.07 1.75 8.13 -51.93 -0.42 1.33 16 27 H -0.01 -0.16 8.11 -51.93 -0.42 -0.59 16 28 H 0.33 5.88 8.74 -39.29 -0.34 5.53 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.02 0.24 6.16 -51.93 -0.32 -0.08 16 31 H 0.09 1.41 7.69 -51.93 -0.40 1.01 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.75 7.82 -51.93 -0.41 0.34 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.58 6.11 -51.93 -0.32 0.26 16 41 H 0.37 2.42 9.12 45.56 0.42 2.83 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 44 H 0.08 2.13 8.14 -51.93 -0.42 1.71 16 45 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 351.65 15.07 5.30 5.30 Total: -1.00 -29.01 351.65 -9.70 -38.71 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -7.68 Total: 7.10 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -1.90 Total: -22.98 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.07 Total: -37.93 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.46 Total: -6.76 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.01 -9.70 -38.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089531194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.152 kcal (2) G-P(sol) polarization free energy of solvation -29.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds