Wall clock time and date at job start Mon Mar 30 2020 06:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00067 * 2 1 4 4 H 1.48500 * 109.47184 * 270.00282 * 3 2 1 5 5 H 1.48505 * 109.46942 * 30.00062 * 3 2 1 6 6 H 1.48495 * 109.46986 * 150.00154 * 3 2 1 7 7 C 1.37876 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99978 * 181.81873 * 7 2 1 9 9 C 1.50699 * 119.99758 * 1.81776 * 7 2 1 10 10 C 1.52997 * 115.55068 * 84.69261 * 9 7 2 11 11 N 1.46901 * 109.47264 * 56.84319 * 10 9 7 12 12 C 1.46900 * 110.99707 * 185.17192 * 11 10 9 13 13 C 1.53006 * 109.46568 * 183.48312 * 12 11 10 14 14 H 1.09003 * 109.47111 * 56.95650 * 13 12 11 15 15 C 1.52996 * 109.47073 * 296.95441 * 13 12 11 16 16 C 1.53011 * 109.46861 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47008 * 59.99928 * 16 15 13 18 18 C 1.52996 * 109.47369 * 299.99762 * 17 16 15 19 19 C 1.53005 * 109.46752 * 176.95372 * 13 12 11 20 20 H 1.09003 * 109.47085 * 60.00263 * 19 13 12 21 21 C 1.52996 * 109.47387 * 299.99876 * 19 13 12 22 22 O 1.42898 * 109.47271 * 174.99695 * 21 19 13 23 23 C 1.53004 * 117.49641 * 230.35912 * 9 7 2 24 24 C 1.53004 * 117.50133 * 299.01611 * 9 7 2 25 25 H 0.97006 * 120.00286 * 5.02174 * 1 2 3 26 26 H 1.09000 * 109.47035 * 296.84019 * 10 9 7 27 27 H 1.09005 * 109.46906 * 176.84211 * 10 9 7 28 28 H 1.00898 * 110.99884 * 61.22039 * 11 10 9 29 29 H 1.08997 * 109.47317 * 63.48932 * 12 11 10 30 30 H 1.09000 * 109.47015 * 303.48125 * 12 11 10 31 31 H 1.08997 * 109.47294 * 60.00699 * 15 13 12 32 32 H 1.09003 * 109.47323 * 300.00080 * 15 13 12 33 33 H 1.08995 * 109.46692 * 180.02562 * 16 15 13 34 34 H 1.09003 * 109.47002 * 300.00013 * 16 15 13 35 35 H 1.09003 * 109.47170 * 60.00188 * 17 16 15 36 36 H 1.09004 * 109.46892 * 179.97438 * 17 16 15 37 37 H 1.08997 * 109.47294 * 179.97438 * 18 17 16 38 38 H 1.08993 * 109.47273 * 300.00376 * 18 17 16 39 39 H 1.09000 * 109.47181 * 295.00151 * 21 19 13 40 40 H 1.09006 * 109.46701 * 55.00242 * 21 19 13 41 41 H 0.96697 * 114.00077 * 179.97438 * 22 21 19 42 42 H 1.08999 * 117.49722 * 215.00365 * 23 9 7 43 43 H 1.08999 * 117.50311 * 0.02660 * 23 9 7 44 44 H 1.09005 * 117.49538 * 359.97438 * 24 9 7 45 45 H 1.09000 * 117.49740 * 144.97380 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0840 -1.1943 0.0291 9 6 1.2515 -2.4988 -0.0425 10 6 0.8490 -2.9838 -1.4366 11 7 2.0469 -3.1026 -2.2786 12 6 1.6870 -3.4482 -3.6602 13 6 2.9607 -3.6481 -4.4841 14 1 3.5772 -4.4176 -4.0192 15 6 3.7424 -2.3342 -4.5416 16 6 5.0158 -2.5340 -5.3661 17 6 4.6420 -2.9676 -6.7849 18 6 3.8603 -4.2815 -6.7274 19 6 2.5874 -4.0821 -5.9030 20 1 1.9710 -3.3126 -6.3679 21 6 1.8058 -5.3960 -5.8455 22 8 1.3569 -5.7411 -7.1576 23 6 1.6195 -3.5605 0.9959 24 6 0.2959 -2.8005 1.1137 25 1 -0.4851 0.8369 -0.0735 26 1 0.1592 -2.2688 -1.8850 27 1 0.3631 -3.9563 -1.3567 28 1 2.6936 -3.7751 -1.8944 29 1 1.0964 -2.6416 -4.0945 30 1 1.1035 -4.3688 -3.6642 31 1 4.0084 -2.0251 -3.5308 32 1 3.1260 -1.5647 -5.0065 33 1 5.5728 -1.5980 -5.4066 34 1 5.6324 -3.3035 -4.9015 35 1 4.0254 -2.1980 -7.2494 36 1 5.5491 -3.1094 -7.3723 37 1 3.5936 -4.5902 -7.7381 38 1 4.4768 -5.0510 -6.2629 39 1 2.4514 -6.1864 -5.4628 40 1 0.9455 -5.2785 -5.1865 41 1 0.8531 -6.5656 -7.1968 42 1 1.5748 -4.6045 0.6859 43 1 2.4059 -3.3151 1.7097 44 1 0.2123 -2.0555 1.9050 45 1 -0.6197 -3.3442 0.8810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089531194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:05 Heat of formation + Delta-G solvation = -73.065832 kcal Electronic energy + Delta-G solvation = -21278.795030 eV Core-core repulsion = 18294.756072 eV Total energy + Delta-G solvation = -2984.038957 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.36149 -38.67813 -37.28249 -35.83849 -33.86349 -32.63538 -31.71510 -27.96735 -27.11537 -26.09414 -24.62480 -22.87143 -22.25809 -21.71710 -20.93958 -20.60581 -18.25807 -17.94912 -16.80536 -16.36821 -16.08843 -15.83189 -15.62014 -15.46776 -15.10097 -14.71879 -14.57173 -14.46470 -13.77879 -13.56937 -13.27228 -13.07572 -12.86437 -12.77582 -12.66753 -12.56702 -12.42226 -12.29872 -11.97047 -11.89630 -11.77016 -11.34549 -11.25880 -11.01008 -10.92220 -10.80310 -10.60450 -10.29503 -9.87206 -8.94298 -7.99838 -6.06069 1.43168 1.44974 1.52774 2.49769 3.25726 3.30193 3.38778 3.64692 3.73110 3.97330 4.01496 4.09326 4.30790 4.40374 4.42922 4.49425 4.54401 4.59947 4.64320 4.66170 4.71143 4.74924 4.78031 4.83214 4.89357 4.93992 5.01788 5.06818 5.11745 5.24660 5.31585 5.31917 5.33675 5.38534 5.42938 5.61871 5.66541 5.68700 5.74083 5.90129 6.39502 6.55900 6.81957 6.92080 6.97339 7.58866 9.08894 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018916 B = 0.005115 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.873116 B = 5473.031652 C = 6351.583767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.021 3.979 3 Si 0.941 3.059 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.467 4.467 8 H 0.048 0.952 9 C 0.021 3.979 10 C 0.125 3.875 11 N -0.672 5.672 12 C 0.065 3.935 13 C -0.062 4.062 14 H 0.079 0.921 15 C -0.104 4.104 16 C -0.116 4.116 17 C -0.117 4.117 18 C -0.101 4.101 19 C -0.078 4.078 20 H 0.058 0.942 21 C 0.078 3.922 22 O -0.589 6.589 23 C -0.188 4.188 24 C -0.164 4.164 25 H 0.254 0.746 26 H 0.034 0.966 27 H 0.009 0.991 28 H 0.338 0.662 29 H 0.045 0.955 30 H 0.032 0.968 31 H 0.059 0.941 32 H 0.041 0.959 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.045 0.955 41 H 0.394 0.606 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.391 -11.793 -12.550 18.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.177 4.177 3 Si 0.768 3.232 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.505 4.505 8 H 0.066 0.934 9 C 0.021 3.979 10 C -0.005 4.005 11 N -0.303 5.303 12 C -0.064 4.064 13 C -0.081 4.081 14 H 0.097 0.903 15 C -0.142 4.142 16 C -0.154 4.154 17 C -0.155 4.155 18 C -0.138 4.138 19 C -0.098 4.098 20 H 0.077 0.923 21 C 0.001 3.999 22 O -0.397 6.397 23 C -0.225 4.225 24 C -0.202 4.202 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.027 0.973 28 H 0.156 0.844 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.244 0.756 42 H 0.108 0.892 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.584 -10.431 -12.754 17.743 hybrid contribution -0.708 -0.062 0.510 0.875 sum 5.876 -10.494 -12.244 17.162 Atomic orbital electron populations 1.70102 1.06853 1.26668 1.52055 1.25533 0.95429 1.01410 0.95336 0.85822 0.78906 0.80694 0.77782 1.20805 1.21623 1.19406 1.20486 0.91903 0.89830 1.48274 0.93352 1.18996 0.98342 0.93491 0.87121 1.21133 0.90760 0.95235 0.93351 1.60094 1.14992 1.53921 1.01292 1.22074 0.96946 0.98052 0.89336 1.20991 0.95406 0.98059 0.93650 0.90289 1.21399 0.96305 0.96250 1.00226 1.21544 0.96899 1.01376 0.95539 1.21538 1.00118 0.97177 0.96636 1.21426 0.95011 0.97584 0.99795 1.21083 0.97009 0.96330 0.95340 0.92346 1.22315 0.97339 0.96393 0.83881 1.86417 1.76173 1.47401 1.29738 1.23000 0.98195 0.96316 1.04958 1.22383 0.92354 1.01834 1.03626 0.93721 0.94734 0.97349 0.84410 0.93678 0.94987 0.92196 0.94044 0.92158 0.91372 0.92930 0.90822 0.91748 0.91394 0.92402 0.93644 0.75616 0.89202 0.90699 0.92561 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.60 12.73 21.45 0.27 -53.33 16 2 C 0.02 1.17 5.42 84.65 0.46 1.63 16 3 Si 0.94 44.92 29.54 68.60 2.03 46.95 16 4 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.47 -25.44 8.57 25.60 0.22 -25.22 16 8 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16 9 C 0.02 1.02 1.65 -52.93 -0.09 0.94 16 10 C 0.12 5.45 5.55 86.30 0.48 5.93 16 11 N -0.67 -25.18 5.60 -513.88 -2.88 -28.06 16 12 C 0.07 2.02 4.84 86.31 0.42 2.44 16 13 C -0.06 -1.58 1.84 -10.79 -0.02 -1.60 16 14 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 15 C -0.10 -2.94 5.08 30.60 0.16 -2.78 16 16 C -0.12 -2.60 5.92 30.60 0.18 -2.42 16 17 C -0.12 -2.35 5.92 30.59 0.18 -2.17 16 18 C -0.10 -2.02 5.10 30.58 0.16 -1.87 16 19 C -0.08 -1.80 1.95 -10.81 -0.02 -1.82 16 20 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 21 C 0.08 1.56 6.21 71.98 0.45 2.01 16 22 O -0.59 -11.58 13.19 -148.98 -1.97 -13.55 16 23 C -0.19 -7.80 9.94 30.62 0.30 -7.50 16 24 C -0.16 -7.74 9.26 30.62 0.28 -7.45 16 25 H 0.25 14.36 8.32 -92.70 -0.77 13.59 16 26 H 0.03 1.74 8.13 -2.39 -0.02 1.72 16 27 H 0.01 0.34 8.11 -2.38 -0.02 0.32 16 28 H 0.34 11.54 8.74 -89.70 -0.78 10.76 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.03 0.91 6.16 -2.39 -0.01 0.90 16 31 H 0.06 1.99 7.69 -2.39 -0.02 1.97 16 32 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 35 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.33 7.82 -2.39 -0.02 1.31 16 38 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.05 0.95 6.11 -2.38 -0.01 0.93 16 41 H 0.39 4.11 9.12 -74.06 -0.68 3.44 16 42 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 43 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 44 H 0.06 2.93 8.14 -2.38 -0.02 2.91 16 45 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -62.22 351.65 0.10 -62.12 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: -0.51 Total: 25.75 kcal Atomic # 6 Polarization: -43.04 SS G_CDS: 3.16 Total: -39.88 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -2.61 Total: -81.39 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -1.97 Total: -13.55 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -62.22 0.10 -62.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089531194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.949 kcal (2) G-P(sol) polarization free energy of solvation -62.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds