Wall clock time and date at job start Mon Mar 30 2020 06:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00250 * 2 1 4 4 H 1.48503 * 109.47114 * 240.00301 * 3 2 1 5 5 H 1.48502 * 109.47140 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47605 * 119.99643 * 3 2 1 7 7 C 1.37874 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00632 * 173.37695 * 7 2 1 9 9 C 1.50702 * 119.99709 * 353.36954 * 7 2 1 10 10 C 1.53004 * 115.54814 * 85.28191 * 9 7 2 11 11 N 1.46899 * 109.47312 * 39.57004 * 10 9 7 12 12 C 1.46892 * 111.00063 * 174.71290 * 11 10 9 13 13 C 1.53006 * 109.47408 * 180.02562 * 12 11 10 14 14 H 1.09007 * 109.46593 * 305.00405 * 13 12 11 15 15 C 1.53002 * 109.46979 * 64.99496 * 13 12 11 16 16 C 1.52997 * 109.46851 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47509 * 300.00391 * 16 15 13 18 18 C 1.52995 * 109.47126 * 59.99922 * 17 16 15 19 19 C 1.52998 * 109.47242 * 185.00166 * 13 12 11 20 20 H 1.08996 * 109.47085 * 299.99413 * 19 13 12 21 21 C 1.52998 * 109.47286 * 60.00097 * 19 13 12 22 22 O 1.42900 * 109.46945 * 185.00017 * 21 19 13 23 23 C 1.53005 * 117.52092 * 230.97793 * 9 7 2 24 24 C 1.52995 * 59.99848 * 107.48427 * 23 9 7 25 25 H 0.97000 * 119.99951 * 5.06203 * 1 2 3 26 26 H 1.09006 * 109.46744 * 279.57600 * 10 9 7 27 27 H 1.08993 * 109.47513 * 159.57391 * 10 9 7 28 28 H 1.00902 * 111.00011 * 298.67150 * 11 10 9 29 29 H 1.09000 * 109.47039 * 60.00179 * 12 11 10 30 30 H 1.09004 * 109.47387 * 300.00084 * 12 11 10 31 31 H 1.09000 * 109.47194 * 300.00666 * 15 13 12 32 32 H 1.09005 * 109.46393 * 60.00548 * 15 13 12 33 33 H 1.08996 * 109.47209 * 60.00988 * 16 15 13 34 34 H 1.09000 * 109.46891 * 180.02562 * 16 15 13 35 35 H 1.08998 * 109.47164 * 180.02562 * 17 16 15 36 36 H 1.09005 * 109.46836 * 300.00335 * 17 16 15 37 37 H 1.08996 * 109.47352 * 180.02562 * 18 17 16 38 38 H 1.09006 * 109.47249 * 60.00033 * 18 17 16 39 39 H 1.08996 * 109.47288 * 65.00032 * 21 19 13 40 40 H 1.09005 * 109.46856 * 304.99909 * 21 19 13 41 41 H 0.96706 * 113.99465 * 180.02562 * 22 21 19 42 42 H 1.08993 * 117.49961 * 214.97852 * 23 9 7 43 43 H 1.08999 * 117.49595 * 359.97438 * 23 9 7 44 44 H 1.09007 * 117.50170 * 252.51323 * 24 23 9 45 45 H 1.09004 * 117.50246 * 107.48988 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0791 -1.1971 -0.1084 9 6 1.2585 -2.4948 0.1496 10 6 0.6963 -3.0862 -1.1447 11 7 1.6663 -2.8967 -2.2315 12 6 1.2158 -3.5622 -3.4611 13 6 2.2497 -3.3435 -4.5676 14 1 2.4285 -2.2754 -4.6919 15 6 3.5586 -4.0387 -4.1872 16 6 4.5926 -3.8195 -5.2933 17 6 4.0672 -4.4043 -6.6059 18 6 2.7585 -3.7092 -6.9863 19 6 1.7240 -3.9288 -5.8798 20 1 1.5454 -4.9968 -5.7555 21 6 0.4152 -3.2336 -6.2602 22 8 -0.1358 -3.8581 -7.4214 23 6 1.7514 -3.4732 1.2177 24 6 0.4481 -2.7007 1.4308 25 1 -0.4850 0.8368 -0.0741 26 1 -0.2368 -2.5832 -1.3987 27 1 0.5092 -4.1510 -1.0064 28 1 1.8403 -1.9161 -2.3940 29 1 0.2580 -3.1440 -3.7706 30 1 1.1030 -4.6304 -3.2758 31 1 3.9331 -3.6217 -3.2523 32 1 3.3798 -5.1067 -4.0629 33 1 4.7713 -2.7514 -5.4172 34 1 5.5249 -4.3151 -5.0225 35 1 4.8041 -4.2485 -7.3938 36 1 3.8886 -5.4725 -6.4819 37 1 2.3839 -4.1261 -7.9211 38 1 2.9370 -2.6410 -7.1102 39 1 0.6103 -2.1822 -6.4711 40 1 -0.2919 -3.3134 -5.4345 41 1 -0.9684 -3.4674 -7.7204 42 1 1.6752 -4.5381 0.9983 43 1 2.6157 -3.1763 1.8117 44 1 0.4547 -1.8954 2.1654 45 1 -0.4857 -3.2574 1.3517 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089531198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:07 Heat of formation + Delta-G solvation = -74.407067 kcal Electronic energy + Delta-G solvation = -21318.287030 eV Core-core repulsion = 18334.189912 eV Total energy + Delta-G solvation = -2984.097118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.33916 -38.64868 -37.28860 -35.77965 -33.94145 -32.62420 -31.71235 -27.94695 -27.13052 -26.11777 -24.49874 -22.85228 -22.27624 -21.69852 -20.97625 -20.58187 -18.26291 -17.81227 -16.62390 -16.58430 -16.09908 -15.83217 -15.69064 -15.48312 -15.11808 -14.76308 -14.55927 -14.28200 -13.72162 -13.55980 -13.25740 -13.03491 -12.89111 -12.79667 -12.71992 -12.56349 -12.39068 -12.31498 -11.96100 -11.88841 -11.74948 -11.34036 -11.27199 -11.02973 -10.88574 -10.75105 -10.64045 -10.34995 -9.89346 -8.93592 -8.04698 -6.13642 1.43628 1.45970 1.52002 2.45688 3.22373 3.28445 3.41723 3.65241 3.74753 4.01321 4.01731 4.10430 4.31060 4.38512 4.43690 4.52637 4.55440 4.61995 4.65823 4.68476 4.72711 4.76013 4.83737 4.88172 4.91210 4.97181 5.04252 5.08606 5.14533 5.25834 5.28779 5.32623 5.34380 5.38738 5.43402 5.61804 5.65810 5.66376 5.67018 5.82811 6.42247 6.60148 6.76842 6.87595 6.93892 7.52688 9.02692 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017958 B = 0.004917 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.857065 B = 5692.775076 C = 5806.990545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.027 3.973 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.486 4.486 8 H 0.052 0.948 9 C 0.025 3.975 10 C 0.121 3.879 11 N -0.671 5.671 12 C 0.061 3.939 13 C -0.066 4.066 14 H 0.061 0.939 15 C -0.099 4.099 16 C -0.118 4.118 17 C -0.115 4.115 18 C -0.103 4.103 19 C -0.075 4.075 20 H 0.070 0.930 21 C 0.076 3.924 22 O -0.586 6.586 23 C -0.186 4.186 24 C -0.169 4.169 25 H 0.257 0.743 26 H -0.001 1.001 27 H 0.048 0.952 28 H 0.340 0.660 29 H 0.018 0.982 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.394 0.606 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.286 -7.067 -13.675 15.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.172 4.172 3 Si 0.769 3.231 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.525 4.525 8 H 0.070 0.930 9 C 0.024 3.976 10 C -0.009 4.009 11 N -0.302 5.302 12 C -0.069 4.069 13 C -0.085 4.085 14 H 0.079 0.921 15 C -0.137 4.137 16 C -0.156 4.156 17 C -0.152 4.152 18 C -0.141 4.141 19 C -0.094 4.094 20 H 0.088 0.912 21 C -0.002 4.002 22 O -0.394 6.394 23 C -0.224 4.224 24 C -0.207 4.207 25 H 0.066 0.934 26 H 0.017 0.983 27 H 0.067 0.933 28 H 0.159 0.841 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.243 0.757 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.056 -7.835 -13.352 16.003 hybrid contribution -1.252 2.085 0.149 2.437 sum 2.803 -5.750 -13.203 14.671 Atomic orbital electron populations 1.70095 1.06991 1.27034 1.50770 1.25582 0.95370 1.01425 0.94871 0.85857 0.78486 0.79934 0.78806 1.19335 1.21617 1.20353 1.20510 0.92761 0.89700 1.49486 0.93017 1.18991 0.97841 0.93941 0.86789 1.21132 0.91607 0.96331 0.91795 1.60366 1.45456 1.19208 1.05193 1.22121 0.95652 0.98978 0.90107 1.20997 0.95301 0.99801 0.92422 0.92088 1.21376 0.94028 0.99868 0.98429 1.21555 0.98210 1.00921 0.94883 1.21523 0.96683 0.99850 0.97164 1.21463 0.94577 1.00561 0.97494 1.21076 0.93663 1.00153 0.94474 0.91156 1.22325 0.94991 0.95681 0.87155 1.86398 1.44002 1.62370 1.46609 1.22974 0.96896 0.96459 1.06024 1.22425 0.93474 1.01308 1.03501 0.93401 0.98331 0.93331 0.84078 0.96388 0.91806 0.92186 0.92461 0.92468 0.91424 0.91026 0.92000 0.91607 0.92376 0.93502 0.93771 0.75701 0.89581 0.90915 0.92601 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.97 12.93 21.45 0.28 -50.69 16 2 C 0.03 1.45 5.39 84.65 0.46 1.91 16 3 Si 0.94 42.58 29.55 68.60 2.03 44.61 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.49 -25.67 7.47 25.60 0.19 -25.48 16 8 H 0.05 2.77 7.82 -2.91 -0.02 2.75 16 9 C 0.03 1.22 1.76 -52.93 -0.09 1.12 16 10 C 0.12 5.36 5.80 86.30 0.50 5.86 16 11 N -0.67 -26.60 5.71 -513.89 -2.94 -29.53 16 12 C 0.06 1.95 4.86 86.31 0.42 2.37 16 13 C -0.07 -1.80 1.86 -10.79 -0.02 -1.82 16 14 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 15 C -0.10 -2.62 5.09 30.59 0.16 -2.47 16 16 C -0.12 -2.58 5.92 30.59 0.18 -2.40 16 17 C -0.11 -2.23 5.92 30.59 0.18 -2.05 16 18 C -0.10 -2.20 5.10 30.61 0.16 -2.04 16 19 C -0.07 -1.78 1.96 -10.78 -0.02 -1.80 16 20 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 21 C 0.08 1.75 6.22 71.98 0.45 2.20 16 22 O -0.59 -12.55 13.20 -148.98 -1.97 -14.51 16 23 C -0.19 -8.11 9.88 30.59 0.30 -7.81 16 24 C -0.17 -8.02 9.46 30.59 0.29 -7.74 16 25 H 0.26 13.92 8.32 -92.71 -0.77 13.15 16 26 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 27 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 28 H 0.34 14.82 7.71 -89.69 -0.69 14.13 16 29 H 0.02 0.59 6.07 -2.39 -0.01 0.58 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.06 1.86 7.75 -2.39 -0.02 1.84 16 32 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.07 1.41 7.82 -2.39 -0.02 1.39 16 38 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.04 1.08 6.07 -2.38 -0.01 1.06 16 41 H 0.39 5.00 9.12 -74.05 -0.68 4.32 16 42 H 0.09 3.33 8.08 -2.39 -0.02 3.31 16 43 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 44 H 0.06 2.87 8.14 -2.38 -0.02 2.85 16 45 H 0.07 3.10 8.14 -2.38 -0.02 3.08 16 Total: -1.00 -57.94 350.08 0.13 -57.81 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: -0.42 Total: 32.46 kcal Atomic # 6 Polarization: -43.29 SS G_CDS: 3.15 Total: -40.15 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: -2.66 Total: -80.22 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -1.97 Total: -14.51 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -57.94 0.13 -57.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089531198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.599 kcal (2) G-P(sol) polarization free energy of solvation -57.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds