Wall clock time and date at job start Mon Mar 30 2020 06:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99426 * 2 1 4 4 H 1.48501 * 109.46838 * 268.07451 * 3 2 1 5 5 H 1.48498 * 109.47170 * 28.07189 * 3 2 1 6 6 H 1.48502 * 109.46720 * 148.07634 * 3 2 1 7 7 C 1.37871 * 120.00578 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99596 * 358.96831 * 7 2 1 9 9 C 1.50700 * 120.00191 * 178.97440 * 7 2 1 10 10 C 1.52998 * 115.54924 * 88.71655 * 9 7 2 11 11 N 1.46896 * 109.47367 * 39.74585 * 10 9 7 12 12 C 1.46901 * 111.00141 * 174.34255 * 11 10 9 13 13 C 1.53000 * 109.47538 * 177.69390 * 12 11 10 14 14 H 1.09001 * 109.46842 * 305.56881 * 13 12 11 15 15 C 1.53001 * 109.46808 * 65.56084 * 13 12 11 16 16 C 1.52997 * 109.47131 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.47435 * 300.00840 * 16 15 13 18 18 C 1.52999 * 109.47278 * 59.99483 * 17 16 15 19 19 C 1.52996 * 109.47106 * 300.00078 * 18 17 16 20 20 H 1.08999 * 109.47234 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.47279 * 300.00386 * 19 18 17 22 22 O 1.42903 * 109.46809 * 294.99531 * 21 19 18 23 23 C 1.53002 * 117.51369 * 234.41723 * 9 7 2 24 24 C 1.52994 * 117.49737 * 303.04598 * 9 7 2 25 25 H 0.96999 * 120.00224 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46895 * 159.74661 * 10 9 7 27 27 H 1.08996 * 109.47293 * 279.74268 * 10 9 7 28 28 H 1.00892 * 110.99870 * 298.30162 * 11 10 9 29 29 H 1.09004 * 109.47361 * 297.70073 * 12 11 10 30 30 H 1.09006 * 109.46801 * 57.69578 * 12 11 10 31 31 H 1.08998 * 109.47577 * 300.00323 * 15 13 12 32 32 H 1.09009 * 109.47016 * 60.00617 * 15 13 12 33 33 H 1.09000 * 109.47187 * 179.97438 * 16 15 13 34 34 H 1.09009 * 109.46525 * 60.00490 * 16 15 13 35 35 H 1.09005 * 109.46507 * 299.99449 * 17 16 15 36 36 H 1.08999 * 109.47289 * 180.02562 * 17 16 15 37 37 H 1.08997 * 109.46828 * 180.02562 * 18 17 16 38 38 H 1.08996 * 109.47132 * 60.00365 * 18 17 16 39 39 H 1.08994 * 109.47376 * 54.99774 * 21 19 18 40 40 H 1.09005 * 109.46910 * 175.00296 * 21 19 18 41 41 H 0.96702 * 113.99844 * 180.02562 * 22 21 19 42 42 H 1.09005 * 117.49249 * 214.96871 * 23 9 7 43 43 H 1.08991 * 117.50049 * 359.97438 * 23 9 7 44 44 H 1.09002 * 117.49708 * 359.97417 * 24 9 7 45 45 H 1.08999 * 117.50143 * 144.97556 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.5372 2.0230 -1.3993 5 1 1.4266 2.6642 0.6588 6 1 3.5257 1.4524 0.7404 7 6 2.0047 -1.1939 -0.0005 8 1 1.4648 -2.1292 0.0159 9 6 3.5115 -1.1939 -0.0239 10 6 4.1927 -1.1513 1.3454 11 7 3.4576 -2.0085 2.2850 12 6 4.1576 -2.0988 3.5733 13 6 3.3351 -2.9509 4.5421 14 1 2.3255 -2.5464 4.6144 15 6 3.2720 -4.3904 4.0277 16 6 2.4501 -5.2427 4.9967 17 6 3.1082 -5.2228 6.3778 18 6 3.1712 -3.7832 6.8920 19 6 3.9933 -2.9311 5.9231 20 1 4.0386 -1.9056 6.2897 21 6 5.4104 -3.4986 5.8208 22 8 6.0661 -3.3731 7.0843 23 6 4.2012 -1.9929 -1.1316 24 6 4.2001 -0.4636 -1.1785 25 1 -0.4850 0.8400 -0.0004 26 1 5.2179 -1.5096 1.2525 27 1 4.1982 -0.1265 1.7167 28 1 2.5117 -1.6804 2.4095 29 1 5.1347 -2.5586 3.4246 30 1 4.2859 -1.0989 3.9879 31 1 2.8035 -4.4046 3.0436 32 1 4.2817 -4.7950 3.9553 33 1 2.4048 -6.2682 4.6300 34 1 1.4404 -4.8383 5.0695 35 1 4.1179 -5.6272 6.3049 36 1 2.5229 -5.8304 7.0680 37 1 3.6405 -3.7691 7.8757 38 1 2.1617 -3.3789 6.9649 39 1 5.3611 -4.5506 5.5400 40 1 5.9692 -2.9466 5.0651 41 1 6.9713 -3.7132 7.0932 42 1 5.1404 -2.4881 -0.8847 43 1 3.5652 -2.5190 -1.8433 44 1 3.5632 0.0165 -1.9215 45 1 5.1382 0.0477 -0.9626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089531200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:10 Heat of formation + Delta-G solvation = -49.130800 kcal Electronic energy + Delta-G solvation = -21456.195063 eV Core-core repulsion = 18473.194006 eV Total energy + Delta-G solvation = -2983.001057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.63334 -37.27030 -36.18696 -34.49799 -32.04820 -31.35246 -30.61434 -26.71702 -25.66929 -24.95153 -23.18397 -22.00161 -21.54967 -20.79667 -18.96192 -18.37043 -17.50935 -16.14838 -15.74980 -15.25996 -14.93613 -14.57499 -14.41586 -14.00966 -13.76599 -13.44833 -13.38683 -12.87249 -12.66721 -12.28654 -12.14264 -11.97756 -11.76647 -11.65999 -11.37912 -11.07308 -11.03056 -10.83106 -10.61127 -10.37235 -10.17657 -10.02917 -9.93866 -9.80069 -9.66152 -9.45746 -8.96013 -8.58332 -8.41035 -7.49552 -6.07703 -4.08567 3.29367 3.38931 3.42859 4.17266 4.43894 4.62483 4.74140 4.85627 4.97094 5.16203 5.20081 5.25328 5.28272 5.34559 5.44283 5.54611 5.67370 5.72434 5.73028 5.79931 5.81427 5.92295 6.03265 6.06448 6.14078 6.18465 6.23615 6.24425 6.31266 6.34868 6.40171 6.45575 6.54422 6.60062 6.64602 6.73866 6.80536 7.07928 7.19837 7.54081 7.79661 7.92674 8.29554 8.59895 9.00010 9.56196 11.03941 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023238 B = 0.004806 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.653136 B = 5824.487676 C = 6019.363103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.074 3.926 3 Si 0.877 3.123 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.261 1.261 7 C -0.473 4.473 8 H 0.081 0.919 9 C 0.009 3.991 10 C 0.097 3.903 11 N -0.670 5.670 12 C 0.058 3.942 13 C -0.077 4.077 14 H 0.076 0.924 15 C -0.107 4.107 16 C -0.122 4.122 17 C -0.120 4.120 18 C -0.109 4.109 19 C -0.080 4.080 20 H 0.072 0.928 21 C 0.074 3.926 22 O -0.576 6.576 23 C -0.175 4.175 24 C -0.210 4.210 25 H 0.263 0.737 26 H 0.045 0.955 27 H 0.019 0.981 28 H 0.357 0.643 29 H 0.062 0.938 30 H 0.018 0.982 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.374 0.626 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.921 -7.503 11.680 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.128 4.128 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.186 1.186 7 C -0.511 4.511 8 H 0.099 0.901 9 C 0.008 3.992 10 C -0.033 4.033 11 N -0.303 5.303 12 C -0.071 4.071 13 C -0.096 4.096 14 H 0.095 0.905 15 C -0.145 4.145 16 C -0.160 4.160 17 C -0.157 4.157 18 C -0.146 4.146 19 C -0.099 4.099 20 H 0.090 0.910 21 C -0.003 4.003 22 O -0.381 6.381 23 C -0.212 4.212 24 C -0.248 4.248 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.038 0.962 28 H 0.178 0.822 29 H 0.080 0.920 30 H 0.036 0.964 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.220 0.780 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.426 -7.696 11.598 16.811 hybrid contribution 0.838 1.722 0.043 1.916 sum 10.264 -5.973 11.641 16.630 Atomic orbital electron populations 1.69897 1.06222 1.26886 1.50727 1.24989 0.94541 0.98786 0.94439 0.86929 0.80282 0.83683 0.78531 1.20521 1.22479 1.18598 1.20248 0.86401 0.94294 1.50159 0.90115 1.19385 0.95095 0.98755 0.85987 1.21565 0.95083 0.93171 0.93447 1.60332 1.06552 1.55377 1.08073 1.22061 0.97625 0.96960 0.90488 1.21129 0.99532 0.96626 0.92284 0.90525 1.21514 0.99885 0.93409 0.99663 1.21591 0.99635 0.99802 0.94947 1.21576 1.00606 0.96655 0.96871 1.21463 0.99644 0.95058 0.98476 1.21102 0.93044 0.99781 0.95935 0.90953 1.22476 0.93398 0.99788 0.84647 1.86463 1.31235 1.86292 1.34083 1.22782 1.00959 0.92521 1.04928 1.22981 1.01488 0.95007 1.05316 0.92719 0.93668 0.96250 0.82186 0.91989 0.96417 0.89855 0.92680 0.92391 0.91987 0.92207 0.92596 0.91731 0.92102 0.92926 0.93543 0.78000 0.91224 0.89828 0.89609 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.96 55.43 0.77 -25.94 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.53 24.93 -169.99 -4.24 17.30 16 4 H -0.28 -6.81 7.06 56.52 0.40 -6.41 16 5 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.26 -6.14 5.55 56.52 0.31 -5.83 16 7 C -0.47 -12.69 8.09 -34.44 -0.28 -12.97 16 8 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 9 C 0.01 0.20 1.24 -155.66 -0.19 0.01 16 10 C 0.10 1.98 5.66 -3.83 -0.02 1.96 16 11 N -0.67 -12.77 5.75 -113.78 -0.65 -13.42 16 12 C 0.06 0.90 4.55 -3.82 -0.02 0.89 16 13 C -0.08 -1.04 2.08 -90.62 -0.19 -1.23 16 14 H 0.08 1.13 8.13 -51.93 -0.42 0.70 16 15 C -0.11 -1.41 4.82 -26.73 -0.13 -1.54 16 16 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 17 C -0.12 -1.27 5.65 -26.73 -0.15 -1.42 16 18 C -0.11 -1.24 5.35 -26.73 -0.14 -1.39 16 19 C -0.08 -0.97 2.43 -90.62 -0.22 -1.19 16 20 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 21 C 0.07 0.82 5.50 37.16 0.20 1.03 16 22 O -0.58 -6.22 13.19 -35.23 -0.46 -6.69 16 23 C -0.17 -3.62 9.88 -26.73 -0.26 -3.88 16 24 C -0.21 -4.52 7.58 -26.73 -0.20 -4.72 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.04 0.85 7.93 -51.93 -0.41 0.44 16 27 H 0.02 0.42 6.50 -51.93 -0.34 0.08 16 28 H 0.36 7.53 7.69 -39.30 -0.30 7.23 16 29 H 0.06 0.91 6.62 -51.93 -0.34 0.56 16 30 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 1.29 7.77 -51.93 -0.40 0.88 16 32 H 0.05 0.69 6.54 -51.92 -0.34 0.35 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 35 H 0.06 0.62 6.32 -51.93 -0.33 0.30 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.75 7.82 -51.93 -0.41 0.34 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.55 4.83 -51.93 -0.25 0.30 16 40 H 0.05 0.52 6.30 -51.93 -0.33 0.19 16 41 H 0.37 2.38 9.12 45.56 0.42 2.79 16 42 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 43 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 44 H 0.09 1.95 7.03 -51.93 -0.36 1.59 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 333.96 15.07 5.03 5.03 Total: -1.00 -29.09 333.96 -8.68 -37.77 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -7.27 Total: 10.02 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: -1.86 Total: -24.08 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.12 Total: -39.36 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.46 Total: -6.69 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.24 Total: 17.30 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.09 -8.68 -37.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089531200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.358 kcal (2) G-P(sol) polarization free energy of solvation -29.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds