Wall clock time and date at job start Mon Mar 30 2020 06:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99426 * 2 1 4 4 H 1.48501 * 109.46838 * 268.07451 * 3 2 1 5 5 H 1.48498 * 109.47170 * 28.07189 * 3 2 1 6 6 H 1.48502 * 109.46720 * 148.07634 * 3 2 1 7 7 C 1.37871 * 120.00578 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99596 * 358.96831 * 7 2 1 9 9 C 1.50700 * 120.00191 * 178.97440 * 7 2 1 10 10 C 1.52998 * 115.54924 * 88.71655 * 9 7 2 11 11 N 1.46896 * 109.47367 * 39.74585 * 10 9 7 12 12 C 1.46901 * 111.00141 * 174.34255 * 11 10 9 13 13 C 1.53000 * 109.47538 * 177.69390 * 12 11 10 14 14 H 1.09001 * 109.46842 * 305.56881 * 13 12 11 15 15 C 1.53001 * 109.46808 * 65.56084 * 13 12 11 16 16 C 1.52997 * 109.47131 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.47435 * 300.00840 * 16 15 13 18 18 C 1.52999 * 109.47278 * 59.99483 * 17 16 15 19 19 C 1.52996 * 109.47106 * 300.00078 * 18 17 16 20 20 H 1.08999 * 109.47234 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.47279 * 300.00386 * 19 18 17 22 22 O 1.42903 * 109.46809 * 294.99531 * 21 19 18 23 23 C 1.53002 * 117.51369 * 234.41723 * 9 7 2 24 24 C 1.52994 * 117.49737 * 303.04598 * 9 7 2 25 25 H 0.96999 * 120.00224 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46895 * 159.74661 * 10 9 7 27 27 H 1.08996 * 109.47293 * 279.74268 * 10 9 7 28 28 H 1.00892 * 110.99870 * 298.30162 * 11 10 9 29 29 H 1.09004 * 109.47361 * 297.70073 * 12 11 10 30 30 H 1.09006 * 109.46801 * 57.69578 * 12 11 10 31 31 H 1.08998 * 109.47577 * 300.00323 * 15 13 12 32 32 H 1.09009 * 109.47016 * 60.00617 * 15 13 12 33 33 H 1.09000 * 109.47187 * 179.97438 * 16 15 13 34 34 H 1.09009 * 109.46525 * 60.00490 * 16 15 13 35 35 H 1.09005 * 109.46507 * 299.99449 * 17 16 15 36 36 H 1.08999 * 109.47289 * 180.02562 * 17 16 15 37 37 H 1.08997 * 109.46828 * 180.02562 * 18 17 16 38 38 H 1.08996 * 109.47132 * 60.00365 * 18 17 16 39 39 H 1.08994 * 109.47376 * 54.99774 * 21 19 18 40 40 H 1.09005 * 109.46910 * 175.00296 * 21 19 18 41 41 H 0.96702 * 113.99844 * 180.02562 * 22 21 19 42 42 H 1.09005 * 117.49249 * 214.96871 * 23 9 7 43 43 H 1.08991 * 117.50049 * 359.97438 * 23 9 7 44 44 H 1.09002 * 117.49708 * 359.97417 * 24 9 7 45 45 H 1.08999 * 117.50143 * 144.97556 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.5372 2.0230 -1.3993 5 1 1.4266 2.6642 0.6588 6 1 3.5257 1.4524 0.7404 7 6 2.0047 -1.1939 -0.0005 8 1 1.4648 -2.1292 0.0159 9 6 3.5115 -1.1939 -0.0239 10 6 4.1927 -1.1513 1.3454 11 7 3.4576 -2.0085 2.2850 12 6 4.1576 -2.0988 3.5733 13 6 3.3351 -2.9509 4.5421 14 1 2.3255 -2.5464 4.6144 15 6 3.2720 -4.3904 4.0277 16 6 2.4501 -5.2427 4.9967 17 6 3.1082 -5.2228 6.3778 18 6 3.1712 -3.7832 6.8920 19 6 3.9933 -2.9311 5.9231 20 1 4.0386 -1.9056 6.2897 21 6 5.4104 -3.4986 5.8208 22 8 6.0661 -3.3731 7.0843 23 6 4.2012 -1.9929 -1.1316 24 6 4.2001 -0.4636 -1.1785 25 1 -0.4850 0.8400 -0.0004 26 1 5.2179 -1.5096 1.2525 27 1 4.1982 -0.1265 1.7167 28 1 2.5117 -1.6804 2.4095 29 1 5.1347 -2.5586 3.4246 30 1 4.2859 -1.0989 3.9879 31 1 2.8035 -4.4046 3.0436 32 1 4.2817 -4.7950 3.9553 33 1 2.4048 -6.2682 4.6300 34 1 1.4404 -4.8383 5.0695 35 1 4.1179 -5.6272 6.3049 36 1 2.5229 -5.8304 7.0680 37 1 3.6405 -3.7691 7.8757 38 1 2.1617 -3.3789 6.9649 39 1 5.3611 -4.5506 5.5400 40 1 5.9692 -2.9466 5.0651 41 1 6.9713 -3.7132 7.0932 42 1 5.1404 -2.4881 -0.8847 43 1 3.5652 -2.5190 -1.8433 44 1 3.5632 0.0165 -1.9215 45 1 5.1382 0.0477 -0.9626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089531200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:10 Heat of formation + Delta-G solvation = -69.165075 kcal Electronic energy + Delta-G solvation = -21457.063814 eV Core-core repulsion = 18473.194006 eV Total energy + Delta-G solvation = -2983.869808 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.65021 -38.95012 -37.07903 -35.84781 -34.17609 -32.42276 -31.68979 -28.21285 -27.24404 -26.22655 -24.53111 -23.24012 -22.99507 -21.92471 -20.77601 -19.42527 -18.37861 -18.06877 -16.83200 -16.80637 -16.44795 -15.79324 -15.65560 -15.27844 -15.20094 -14.74880 -14.67163 -14.29908 -14.20385 -13.66066 -13.48326 -13.07253 -13.01692 -12.94029 -12.80229 -12.61878 -12.37783 -12.06288 -11.98934 -11.89851 -11.80975 -11.41997 -11.08623 -10.96402 -10.87483 -10.81512 -10.59414 -10.53943 -10.19995 -9.02141 -8.23861 -6.27279 1.34137 1.37542 1.48009 2.38384 3.09092 3.15215 3.36679 3.54984 3.78668 3.85454 4.02070 4.18383 4.24619 4.30312 4.38735 4.43817 4.48536 4.50974 4.53297 4.63641 4.68612 4.77422 4.78488 4.81320 4.84816 4.85457 4.88945 4.96600 5.12649 5.13538 5.17863 5.29421 5.30973 5.35905 5.37252 5.47452 5.52581 5.62371 5.65385 5.79260 6.34100 6.50640 6.64843 6.83602 6.95473 7.40079 8.91537 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023238 B = 0.004806 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.653136 B = 5824.487676 C = 6019.363103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.022 3.978 3 Si 0.933 3.067 4 H -0.273 1.273 5 H -0.304 1.304 6 H -0.239 1.239 7 C -0.461 4.461 8 H 0.035 0.965 9 C -0.019 4.019 10 C 0.104 3.896 11 N -0.678 5.678 12 C 0.062 3.938 13 C -0.071 4.071 14 H 0.057 0.943 15 C -0.102 4.102 16 C -0.120 4.120 17 C -0.113 4.113 18 C -0.107 4.107 19 C -0.078 4.078 20 H 0.061 0.939 21 C 0.079 3.921 22 O -0.589 6.589 23 C -0.160 4.160 24 C -0.204 4.204 25 H 0.262 0.738 26 H 0.071 0.929 27 H 0.010 0.990 28 H 0.340 0.660 29 H 0.078 0.922 30 H 0.015 0.985 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.394 0.606 42 H 0.102 0.898 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.915 -7.866 12.534 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.175 4.175 3 Si 0.760 3.240 4 H -0.199 1.199 5 H -0.232 1.232 6 H -0.163 1.163 7 C -0.499 4.499 8 H 0.053 0.947 9 C -0.020 4.020 10 C -0.025 4.025 11 N -0.309 5.309 12 C -0.067 4.067 13 C -0.090 4.090 14 H 0.075 0.925 15 C -0.139 4.139 16 C -0.158 4.158 17 C -0.151 4.151 18 C -0.144 4.144 19 C -0.097 4.097 20 H 0.080 0.920 21 C 0.002 3.998 22 O -0.397 6.397 23 C -0.197 4.197 24 C -0.242 4.242 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.028 0.972 28 H 0.159 0.841 29 H 0.097 0.903 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.243 0.757 42 H 0.120 0.880 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.473 -8.083 12.455 19.391 hybrid contribution -0.117 1.727 -0.224 1.746 sum 12.356 -6.356 12.231 18.511 Atomic orbital electron populations 1.70042 1.08066 1.27592 1.53264 1.25704 0.95061 1.02206 0.94543 0.86015 0.79784 0.79368 0.78883 1.19882 1.23172 1.16268 1.20300 0.88884 0.92300 1.48435 0.94689 1.19396 0.92847 1.01642 0.88154 1.21476 0.96028 0.93051 0.91993 1.60347 1.05825 1.54823 1.09897 1.22135 0.98159 0.97313 0.89117 1.21034 0.98421 0.96535 0.92964 0.92474 1.21434 1.00520 0.93432 0.98559 1.21567 0.98898 0.99904 0.95401 1.21534 1.01172 0.96220 0.96135 1.21440 0.99192 0.95476 0.98327 1.21038 0.94255 0.99600 0.94799 0.92042 1.22357 0.92395 1.00127 0.84900 1.86414 1.32914 1.86646 1.33747 1.22817 1.01582 0.92370 1.02924 1.23002 1.02017 0.95650 1.03495 0.92900 0.91103 0.97228 0.84146 0.90347 0.96674 0.92685 0.91438 0.91380 0.93056 0.91311 0.91363 0.91523 0.92670 0.91989 0.93473 0.75672 0.88018 0.90990 0.91256 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.53 13.96 21.45 0.30 -58.23 16 2 C 0.02 1.23 5.47 84.65 0.46 1.70 16 3 Si 0.93 44.38 24.93 68.60 1.71 46.09 16 4 H -0.27 -12.65 7.06 99.48 0.70 -11.95 16 5 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 6 H -0.24 -10.45 5.55 99.48 0.55 -9.90 16 7 C -0.46 -25.34 8.09 25.60 0.21 -25.13 16 8 H 0.03 2.19 8.06 -2.91 -0.02 2.17 16 9 C -0.02 -0.86 1.24 -52.93 -0.07 -0.92 16 10 C 0.10 4.05 5.66 86.30 0.49 4.54 16 11 N -0.68 -25.55 5.75 -513.89 -2.95 -28.51 16 12 C 0.06 1.84 4.55 86.30 0.39 2.23 16 13 C -0.07 -1.89 2.08 -10.79 -0.02 -1.91 16 14 H 0.06 1.74 8.13 -2.39 -0.02 1.72 16 15 C -0.10 -2.60 4.82 30.59 0.15 -2.45 16 16 C -0.12 -2.66 5.92 30.59 0.18 -2.48 16 17 C -0.11 -2.17 5.65 30.59 0.17 -2.00 16 18 C -0.11 -2.28 5.35 30.59 0.16 -2.12 16 19 C -0.08 -1.80 2.43 -10.80 -0.03 -1.83 16 20 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 21 C 0.08 1.55 5.50 71.98 0.40 1.95 16 22 O -0.59 -11.10 13.19 -148.98 -1.97 -13.07 16 23 C -0.16 -6.24 9.88 30.60 0.30 -5.94 16 24 C -0.20 -8.21 7.58 30.59 0.23 -7.98 16 25 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 26 H 0.07 2.40 7.93 -2.39 -0.02 2.38 16 27 H 0.01 0.39 6.50 -2.39 -0.02 0.38 16 28 H 0.34 14.78 7.69 -89.70 -0.69 14.09 16 29 H 0.08 2.08 6.62 -2.38 -0.02 2.07 16 30 H 0.02 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.05 1.72 7.77 -2.39 -0.02 1.70 16 32 H 0.07 1.54 6.54 -2.38 -0.02 1.53 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.07 1.22 6.32 -2.38 -0.02 1.20 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.42 7.82 -2.39 -0.02 1.40 16 38 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 1.10 4.83 -2.39 -0.01 1.09 16 40 H 0.05 0.91 6.30 -2.38 -0.02 0.90 16 41 H 0.39 3.79 9.12 -74.06 -0.68 3.11 16 42 H 0.10 3.33 8.08 -2.38 -0.02 3.32 16 43 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 44 H 0.07 3.02 7.03 -2.39 -0.02 3.01 16 45 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 Total: -1.00 -63.62 333.96 -0.43 -64.05 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: -0.55 Total: 32.00 kcal Atomic # 6 Polarization: -45.37 SS G_CDS: 3.03 Total: -42.34 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -2.65 Total: -86.74 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -1.97 Total: -13.07 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.71 Total: 46.09 kcal Total: -63.62 -0.43 -64.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089531200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.118 kcal (2) G-P(sol) polarization free energy of solvation -63.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds