Wall clock time and date at job start Mon Mar 30 2020 06:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86793 * 120.00520 * 2 1 4 4 H 1.48500 * 109.47591 * 240.00029 * 3 2 1 5 5 H 1.48506 * 109.47121 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47318 * 119.99861 * 3 2 1 7 7 C 1.37888 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99831 * 173.70619 * 7 2 1 9 9 C 1.50694 * 119.99701 * 353.70453 * 7 2 1 10 10 C 1.53003 * 115.54860 * 86.11280 * 9 7 2 11 11 O 1.42895 * 109.47117 * 65.11118 * 10 9 7 12 12 C 1.42901 * 114.00267 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47278 * 179.97438 * 12 11 10 14 14 H 1.08993 * 109.47387 * 305.00516 * 13 12 11 15 15 C 1.53006 * 109.46666 * 65.00759 * 13 12 11 16 16 C 1.52997 * 109.47335 * 59.99601 * 15 13 12 17 17 C 1.52999 * 109.46878 * 59.99985 * 16 15 13 18 18 C 1.52994 * 109.47400 * 299.99716 * 17 16 15 19 19 C 1.52997 * 109.46873 * 60.00281 * 18 17 16 20 20 H 1.09001 * 109.47568 * 59.99977 * 19 18 17 21 21 C 1.53006 * 109.47335 * 180.02562 * 19 18 17 22 22 N 1.46899 * 109.46783 * 295.00240 * 21 19 18 23 23 C 1.53006 * 117.50025 * 231.78105 * 9 7 2 24 24 C 1.53005 * 117.50481 * 300.44202 * 9 7 2 25 25 H 0.97002 * 119.99994 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.47545 * 305.10857 * 10 9 7 27 27 H 1.09004 * 109.47120 * 185.10730 * 10 9 7 28 28 H 1.09004 * 109.46738 * 59.99885 * 12 11 10 29 29 H 1.08990 * 109.47188 * 299.99886 * 12 11 10 30 30 H 1.09004 * 109.46721 * 299.99740 * 15 13 12 31 31 H 1.09001 * 109.46831 * 180.02562 * 15 13 12 32 32 H 1.08993 * 109.47291 * 300.00085 * 16 15 13 33 33 H 1.08995 * 109.47081 * 180.02562 * 16 15 13 34 34 H 1.09007 * 109.47143 * 179.97438 * 17 16 15 35 35 H 1.09000 * 109.47119 * 60.00646 * 17 16 15 36 36 H 1.08997 * 109.47248 * 300.00663 * 18 17 16 37 37 H 1.08995 * 109.47250 * 179.97438 * 18 17 16 38 38 H 1.08996 * 109.46976 * 54.99657 * 21 19 18 39 39 H 1.09001 * 109.47368 * 174.99953 * 21 19 18 40 40 H 1.00900 * 111.00004 * 180.02562 * 22 21 19 41 41 H 1.00900 * 110.99835 * 303.94702 * 22 21 19 42 42 H 1.08993 * 117.49874 * 215.00613 * 23 9 7 43 43 H 1.08998 * 117.49415 * 0.02562 * 23 9 7 44 44 H 1.09000 * 117.48890 * 359.97438 * 24 9 7 45 45 H 1.08995 * 117.49861 * 144.99562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0795 -1.1969 -0.1031 9 6 1.2577 -2.4953 0.1420 10 6 0.7191 -3.0930 -1.1594 11 8 1.8123 -3.4584 -2.0040 12 6 1.4165 -4.0304 -3.2523 13 6 2.6612 -4.3806 -4.0703 14 1 3.2869 -3.4947 -4.1772 15 6 3.4498 -5.4788 -3.3539 16 6 2.5714 -6.7224 -3.2039 17 6 2.1490 -7.2184 -4.5882 18 6 1.3603 -6.1204 -5.3046 19 6 2.2387 -4.8768 -5.4546 20 1 3.1254 -5.1263 -6.0374 21 6 1.4498 -3.7784 -6.1705 22 7 1.1468 -4.2081 -7.5421 23 6 1.7338 -3.4684 1.2225 24 6 0.4250 -2.6969 1.4097 25 1 -0.4850 0.8401 -0.0004 26 1 0.0977 -2.3560 -1.6679 27 1 0.1230 -3.9772 -0.9338 28 1 0.8093 -3.3130 -3.8044 29 1 0.8352 -4.9341 -3.0698 30 1 3.7508 -5.1253 -2.3676 31 1 4.3368 -5.7280 -3.9364 32 1 1.6848 -6.4729 -2.6212 33 1 3.1331 -7.5045 -2.6931 34 1 1.5235 -8.1047 -4.4814 35 1 3.0357 -7.4681 -5.1709 36 1 0.4736 -5.8708 -4.7218 37 1 1.0597 -6.4736 -6.2909 38 1 0.5193 -3.5913 -5.6345 39 1 2.0431 -2.8645 -6.1986 40 1 0.6261 -3.4991 -8.0364 41 1 1.9905 -4.4497 -8.0401 42 1 1.6633 -4.5343 1.0061 43 1 2.5868 -3.1673 1.8304 44 1 0.4178 -1.8884 2.1407 45 1 -0.5064 -3.2552 1.3165 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089535425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:48 Heat of formation + Delta-G solvation = -50.270445 kcal Electronic energy + Delta-G solvation = -21524.333557 eV Core-core repulsion = 18541.283082 eV Total energy + Delta-G solvation = -2983.050475 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.55844 -37.15600 -35.35154 -34.56647 -31.86349 -31.20364 -30.19085 -26.69752 -25.39423 -24.50143 -24.35639 -22.02877 -21.02163 -20.93045 -19.14539 -18.34769 -16.47662 -16.00064 -15.60473 -15.32596 -14.74288 -14.62854 -14.36371 -14.20489 -13.91042 -13.68329 -13.54077 -12.84632 -12.39793 -12.10997 -11.92512 -11.81810 -11.76087 -11.34913 -11.24022 -10.92018 -10.86570 -10.70547 -10.65492 -10.45173 -10.17919 -9.92252 -9.87969 -9.73038 -9.40830 -8.91850 -8.75751 -8.47173 -8.36007 -8.04287 -5.98294 -4.01064 3.34372 3.38197 3.41891 4.35296 4.45661 4.50406 4.79684 4.83929 5.00144 5.21958 5.31908 5.35987 5.42829 5.47731 5.51410 5.56864 5.67881 5.79009 5.80282 5.83222 5.89829 6.02229 6.06209 6.15576 6.26985 6.28742 6.32741 6.37769 6.42138 6.48826 6.53020 6.62394 6.65824 6.78687 6.79829 6.87280 7.01383 7.13480 7.30936 7.50594 7.58064 7.94995 8.26688 8.54596 8.99426 9.62970 11.11445 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019858 B = 0.005194 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.671530 B = 5389.597175 C = 6163.921716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.480 4.480 8 H 0.060 0.940 9 C 0.045 3.955 10 C 0.111 3.889 11 O -0.371 6.371 12 C 0.062 3.938 13 C -0.079 4.079 14 H 0.076 0.924 15 C -0.108 4.108 16 C -0.122 4.122 17 C -0.119 4.119 18 C -0.108 4.108 19 C -0.074 4.074 20 H 0.068 0.932 21 C 0.058 3.942 22 N -0.850 5.850 23 C -0.206 4.206 24 C -0.152 4.152 25 H 0.259 0.741 26 H 0.050 0.950 27 H 0.011 0.989 28 H 0.038 0.962 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.029 0.971 40 H 0.339 0.661 41 H 0.336 0.664 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.618 -10.824 -11.336 15.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.518 4.518 8 H 0.078 0.922 9 C 0.045 3.955 10 C 0.035 3.965 11 O -0.290 6.290 12 C -0.015 4.015 13 C -0.098 4.098 14 H 0.094 0.906 15 C -0.145 4.145 16 C -0.160 4.160 17 C -0.157 4.157 18 C -0.145 4.145 19 C -0.093 4.093 20 H 0.086 0.914 21 C -0.072 4.072 22 N -0.378 5.378 23 C -0.243 4.243 24 C -0.190 4.190 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.029 0.971 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.047 0.953 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.225 -11.248 -10.924 15.837 hybrid contribution 0.605 1.806 -0.349 1.936 sum 2.830 -9.442 -11.273 14.975 Atomic orbital electron populations 1.69997 1.05841 1.26430 1.50045 1.24973 0.94807 0.98835 0.94846 0.86703 0.79664 0.83203 0.78688 1.20268 1.21386 1.20236 1.20351 0.92960 0.88519 1.49948 0.92216 1.18727 0.98093 0.93862 0.84849 1.22118 0.87591 0.94860 0.91973 1.87929 1.32891 1.81082 1.27060 1.22533 0.95793 0.96360 0.86777 1.21066 0.96865 0.98647 0.93202 0.90603 1.21442 0.97289 0.94469 1.01302 1.21580 1.00261 0.97370 0.96753 1.21559 0.99718 0.97892 0.96482 1.21511 0.98015 0.94348 1.00644 1.21112 0.98059 0.95133 0.95039 0.91352 1.21984 1.00043 0.95795 0.89411 1.58758 1.27066 1.47997 1.04018 1.22951 0.98255 0.95747 1.07337 1.22511 0.92129 1.01201 1.03122 0.93128 0.93161 0.97055 0.94390 0.93952 0.90671 0.92753 0.91601 0.92527 0.92525 0.92505 0.92074 0.91205 0.90542 0.95298 0.84894 0.85209 0.91733 0.90501 0.89828 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 12.88 55.43 0.71 -24.66 16 2 C 0.07 1.88 5.38 -17.82 -0.10 1.79 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.48 -13.50 8.77 -34.44 -0.30 -13.80 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.05 1.16 1.62 -155.66 -0.25 0.90 16 10 C 0.11 2.62 5.76 37.16 0.21 2.83 16 11 O -0.37 -8.14 9.81 -35.23 -0.35 -8.48 16 12 C 0.06 1.07 4.39 37.16 0.16 1.24 16 13 C -0.08 -1.13 2.43 -90.61 -0.22 -1.36 16 14 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 15 C -0.11 -1.48 5.35 -26.73 -0.14 -1.62 16 16 C -0.12 -1.53 5.65 -26.73 -0.15 -1.68 16 17 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 18 C -0.11 -1.24 4.82 -26.74 -0.13 -1.37 16 19 C -0.07 -0.88 2.11 -90.62 -0.19 -1.07 16 20 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 21 C 0.06 0.68 5.68 -3.82 -0.02 0.66 16 22 N -0.85 -8.18 9.08 -10.37 -0.09 -8.27 16 23 C -0.21 -4.69 9.96 -26.69 -0.27 -4.96 16 24 C -0.15 -3.66 9.37 -26.69 -0.25 -3.91 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.01 0.25 8.09 -51.93 -0.42 -0.17 16 28 H 0.04 0.66 6.28 -51.93 -0.33 0.33 16 29 H 0.04 0.69 4.83 -51.93 -0.25 0.44 16 30 H 0.07 1.20 7.82 -51.93 -0.41 0.79 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.92 6.32 -51.93 -0.33 0.59 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.77 6.54 -51.93 -0.34 0.43 16 37 H 0.07 0.79 7.75 -51.93 -0.40 0.38 16 38 H 0.08 0.99 6.59 -51.93 -0.34 0.65 16 39 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.34 2.83 9.08 -39.29 -0.36 2.47 16 41 H 0.34 2.76 8.99 -39.29 -0.35 2.41 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 43 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 44 H 0.08 2.12 8.14 -51.93 -0.42 1.70 16 45 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 345.97 15.07 5.21 5.21 Total: -1.00 -29.06 345.97 -9.48 -38.54 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -8.14 Total: 4.96 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -1.80 Total: -23.81 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.62 Total: -32.94 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.35 Total: -8.48 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.06 -9.48 -38.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089535425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.734 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds