Wall clock time and date at job start Mon Mar 30 2020 06:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86793 * 120.00520 * 2 1 4 4 H 1.48500 * 109.47591 * 240.00029 * 3 2 1 5 5 H 1.48506 * 109.47121 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47318 * 119.99861 * 3 2 1 7 7 C 1.37888 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99831 * 173.70619 * 7 2 1 9 9 C 1.50694 * 119.99701 * 353.70453 * 7 2 1 10 10 C 1.53003 * 115.54860 * 86.11280 * 9 7 2 11 11 O 1.42895 * 109.47117 * 65.11118 * 10 9 7 12 12 C 1.42901 * 114.00267 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47278 * 179.97438 * 12 11 10 14 14 H 1.08993 * 109.47387 * 305.00516 * 13 12 11 15 15 C 1.53006 * 109.46666 * 65.00759 * 13 12 11 16 16 C 1.52997 * 109.47335 * 59.99601 * 15 13 12 17 17 C 1.52999 * 109.46878 * 59.99985 * 16 15 13 18 18 C 1.52994 * 109.47400 * 299.99716 * 17 16 15 19 19 C 1.52997 * 109.46873 * 60.00281 * 18 17 16 20 20 H 1.09001 * 109.47568 * 59.99977 * 19 18 17 21 21 C 1.53006 * 109.47335 * 180.02562 * 19 18 17 22 22 N 1.46899 * 109.46783 * 295.00240 * 21 19 18 23 23 C 1.53006 * 117.50025 * 231.78105 * 9 7 2 24 24 C 1.53005 * 117.50481 * 300.44202 * 9 7 2 25 25 H 0.97002 * 119.99994 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.47545 * 305.10857 * 10 9 7 27 27 H 1.09004 * 109.47120 * 185.10730 * 10 9 7 28 28 H 1.09004 * 109.46738 * 59.99885 * 12 11 10 29 29 H 1.08990 * 109.47188 * 299.99886 * 12 11 10 30 30 H 1.09004 * 109.46721 * 299.99740 * 15 13 12 31 31 H 1.09001 * 109.46831 * 180.02562 * 15 13 12 32 32 H 1.08993 * 109.47291 * 300.00085 * 16 15 13 33 33 H 1.08995 * 109.47081 * 180.02562 * 16 15 13 34 34 H 1.09007 * 109.47143 * 179.97438 * 17 16 15 35 35 H 1.09000 * 109.47119 * 60.00646 * 17 16 15 36 36 H 1.08997 * 109.47248 * 300.00663 * 18 17 16 37 37 H 1.08995 * 109.47250 * 179.97438 * 18 17 16 38 38 H 1.08996 * 109.46976 * 54.99657 * 21 19 18 39 39 H 1.09001 * 109.47368 * 174.99953 * 21 19 18 40 40 H 1.00900 * 111.00004 * 180.02562 * 22 21 19 41 41 H 1.00900 * 110.99835 * 303.94702 * 22 21 19 42 42 H 1.08993 * 117.49874 * 215.00613 * 23 9 7 43 43 H 1.08998 * 117.49415 * 0.02562 * 23 9 7 44 44 H 1.09000 * 117.48890 * 359.97438 * 24 9 7 45 45 H 1.08995 * 117.49861 * 144.99562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0795 -1.1969 -0.1031 9 6 1.2577 -2.4953 0.1420 10 6 0.7191 -3.0930 -1.1594 11 8 1.8123 -3.4584 -2.0040 12 6 1.4165 -4.0304 -3.2523 13 6 2.6612 -4.3806 -4.0703 14 1 3.2869 -3.4947 -4.1772 15 6 3.4498 -5.4788 -3.3539 16 6 2.5714 -6.7224 -3.2039 17 6 2.1490 -7.2184 -4.5882 18 6 1.3603 -6.1204 -5.3046 19 6 2.2387 -4.8768 -5.4546 20 1 3.1254 -5.1263 -6.0374 21 6 1.4498 -3.7784 -6.1705 22 7 1.1468 -4.2081 -7.5421 23 6 1.7338 -3.4684 1.2225 24 6 0.4250 -2.6969 1.4097 25 1 -0.4850 0.8401 -0.0004 26 1 0.0977 -2.3560 -1.6679 27 1 0.1230 -3.9772 -0.9338 28 1 0.8093 -3.3130 -3.8044 29 1 0.8352 -4.9341 -3.0698 30 1 3.7508 -5.1253 -2.3676 31 1 4.3368 -5.7280 -3.9364 32 1 1.6848 -6.4729 -2.6212 33 1 3.1331 -7.5045 -2.6931 34 1 1.5235 -8.1047 -4.4814 35 1 3.0357 -7.4681 -5.1709 36 1 0.4736 -5.8708 -4.7218 37 1 1.0597 -6.4736 -6.2909 38 1 0.5193 -3.5913 -5.6345 39 1 2.0431 -2.8645 -6.1986 40 1 0.6261 -3.4991 -8.0364 41 1 1.9905 -4.4497 -8.0401 42 1 1.6633 -4.5343 1.0061 43 1 2.5868 -3.1673 1.8304 44 1 0.4178 -1.8884 2.1407 45 1 -0.5064 -3.2552 1.3165 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089535425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:47 Heat of formation + Delta-G solvation = -67.340680 kcal Electronic energy + Delta-G solvation = -21525.073778 eV Core-core repulsion = 18541.283082 eV Total energy + Delta-G solvation = -2983.790696 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.69668 -38.91590 -37.05685 -35.49482 -33.98894 -32.31724 -31.14244 -28.39922 -27.29892 -26.06549 -25.42081 -23.06495 -22.89990 -21.91175 -21.09875 -19.51005 -18.23651 -17.40039 -17.01799 -16.63404 -16.56673 -15.96565 -15.71205 -15.49187 -15.07383 -15.03906 -14.78055 -14.43970 -13.80744 -13.45479 -13.37405 -13.12287 -12.93095 -12.86416 -12.74767 -12.70057 -12.44655 -12.34290 -12.05716 -11.91441 -11.77866 -11.37487 -11.04338 -10.97510 -10.82425 -10.78422 -10.43510 -10.22622 -9.97181 -9.57765 -8.11424 -6.20444 1.40068 1.41114 1.48793 2.42497 2.86898 3.17986 3.55361 3.58870 3.76506 3.81547 4.04557 4.20365 4.25144 4.30697 4.39666 4.46944 4.47782 4.52105 4.56886 4.61828 4.64712 4.72931 4.77355 4.82233 4.88519 4.90546 4.93493 4.99232 5.12505 5.17028 5.21876 5.29062 5.34676 5.38021 5.46367 5.58425 5.61351 5.63304 5.63911 5.77536 6.21434 6.40207 6.62246 6.63918 6.83219 7.46301 8.97518 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019858 B = 0.005194 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.671530 B = 5389.597175 C = 6163.921716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.024 3.976 3 Si 0.948 3.052 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.499 4.499 8 H 0.045 0.955 9 C 0.009 3.991 10 C 0.125 3.875 11 O -0.389 6.389 12 C 0.060 3.940 13 C -0.075 4.075 14 H 0.060 0.940 15 C -0.105 4.105 16 C -0.120 4.120 17 C -0.113 4.113 18 C -0.104 4.104 19 C -0.065 4.065 20 H 0.086 0.914 21 C 0.061 3.939 22 N -0.847 5.847 23 C -0.183 4.183 24 C -0.150 4.150 25 H 0.260 0.740 26 H 0.020 0.980 27 H 0.029 0.971 28 H 0.031 0.969 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.021 0.979 40 H 0.347 0.653 41 H 0.347 0.653 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.326 -12.125 -12.473 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.176 4.176 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.009 3.991 10 C 0.048 3.952 11 O -0.309 6.309 12 C -0.016 4.016 13 C -0.094 4.094 14 H 0.078 0.922 15 C -0.143 4.143 16 C -0.158 4.158 17 C -0.151 4.151 18 C -0.141 4.141 19 C -0.084 4.084 20 H 0.104 0.896 21 C -0.070 4.070 22 N -0.377 5.377 23 C -0.220 4.220 24 C -0.188 4.188 25 H 0.069 0.931 26 H 0.038 0.962 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.039 0.961 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.940 -12.557 -12.072 17.665 hybrid contribution 0.393 2.182 -0.029 2.217 sum 3.333 -10.375 -12.100 16.284 Atomic orbital electron populations 1.70092 1.06936 1.27131 1.50627 1.25643 0.95618 1.01792 0.94505 0.85774 0.78584 0.79508 0.78743 1.20093 1.20670 1.19599 1.20560 0.92539 0.90293 1.50328 0.93675 1.18905 0.99598 0.94265 0.86330 1.21785 0.87579 0.94564 0.91251 1.87895 1.32794 1.81480 1.28713 1.22760 0.97484 0.96237 0.85142 1.21068 0.95391 0.98521 0.94449 0.92201 1.21415 0.98223 0.94679 0.99972 1.21557 0.99317 0.97031 0.97847 1.21532 1.00406 0.97842 0.95294 1.21474 0.97395 0.94293 1.00935 1.21043 0.98827 0.95204 0.93317 0.89585 1.21852 0.98987 0.95600 0.90538 1.58702 1.27725 1.48141 1.03178 1.22936 0.97392 0.96493 1.05147 1.22429 0.93409 1.01110 1.01832 0.93097 0.96169 0.95332 0.95078 0.92874 0.93452 0.90712 0.93474 0.91339 0.91360 0.90971 0.93588 0.90329 0.92328 0.96065 0.83982 0.83966 0.89351 0.90525 0.91784 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.93 12.88 21.45 0.28 -52.65 16 2 C 0.02 1.37 5.38 84.66 0.46 1.82 16 3 Si 0.95 44.61 29.54 68.60 2.03 46.64 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.50 -28.63 8.77 25.60 0.22 -28.40 16 8 H 0.05 2.64 7.82 -2.91 -0.02 2.62 16 9 C 0.01 0.49 1.62 -52.92 -0.09 0.40 16 10 C 0.12 5.99 5.76 71.98 0.41 6.40 16 11 O -0.39 -17.43 9.81 -148.98 -1.46 -18.89 16 12 C 0.06 2.09 4.39 71.98 0.32 2.41 16 13 C -0.08 -2.13 2.43 -10.79 -0.03 -2.16 16 14 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 15 C -0.11 -2.78 5.35 30.60 0.16 -2.61 16 16 C -0.12 -2.79 5.65 30.59 0.17 -2.62 16 17 C -0.11 -2.15 5.92 30.59 0.18 -1.97 16 18 C -0.10 -2.16 4.82 30.59 0.15 -2.01 16 19 C -0.07 -1.43 2.11 -10.79 -0.02 -1.45 16 20 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 21 C 0.06 1.38 5.68 86.31 0.49 1.87 16 22 N -0.85 -14.76 9.08 -186.71 -1.69 -16.46 16 23 C -0.18 -8.19 9.96 30.62 0.30 -7.89 16 24 C -0.15 -7.22 9.37 30.62 0.29 -6.93 16 25 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 26 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.03 1.25 8.09 -2.39 -0.02 1.23 16 28 H 0.03 1.12 6.28 -2.38 -0.01 1.10 16 29 H 0.05 1.74 4.83 -2.39 -0.01 1.72 16 30 H 0.05 1.50 7.82 -2.39 -0.02 1.48 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.27 6.32 -2.39 -0.02 1.25 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.05 1.10 6.54 -2.39 -0.02 1.09 16 37 H 0.08 1.54 7.75 -2.39 -0.02 1.53 16 38 H 0.06 1.53 6.59 -2.39 -0.02 1.51 16 39 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.35 5.25 9.08 -89.69 -0.81 4.43 16 41 H 0.35 4.85 8.99 -89.69 -0.81 4.04 16 42 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 43 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 44 H 0.06 3.29 8.14 -2.39 -0.02 3.27 16 45 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -62.32 345.97 1.51 -60.81 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -0.66 Total: 23.70 kcal Atomic # 6 Polarization: -46.17 SS G_CDS: 3.02 Total: -43.15 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -1.42 Total: -69.11 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -1.46 Total: -18.89 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -62.32 1.51 -60.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089535425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.532 kcal (2) G-P(sol) polarization free energy of solvation -62.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds