Wall clock time and date at job start Mon Mar 30 2020 06:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99646 * 2 1 4 4 H 1.48504 * 109.46977 * 240.00122 * 3 2 1 5 5 H 1.48500 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47063 * 120.00420 * 3 2 1 7 7 C 1.37877 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99974 * 185.14434 * 7 2 1 9 9 C 1.50699 * 119.99866 * 5.14964 * 7 2 1 10 10 C 1.53000 * 115.54799 * 275.19716 * 9 7 2 11 11 O 1.42894 * 109.47374 * 294.94235 * 10 9 7 12 12 C 1.42899 * 114.00017 * 184.98003 * 11 10 9 13 13 C 1.52998 * 109.47042 * 184.98154 * 12 11 10 14 14 H 1.09001 * 109.47729 * 56.83333 * 13 12 11 15 15 C 1.53009 * 109.46981 * 296.82988 * 13 12 11 16 16 C 1.53003 * 109.46885 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47445 * 59.99962 * 16 15 13 18 18 C 1.52999 * 109.47141 * 299.99921 * 17 16 15 19 19 C 1.53001 * 109.47334 * 60.00031 * 18 17 16 20 20 H 1.08997 * 109.46877 * 59.99919 * 19 18 17 21 21 C 1.52999 * 109.47334 * 180.02562 * 19 18 17 22 22 N 1.46895 * 109.46938 * 294.99880 * 21 19 18 23 23 C 1.53003 * 117.49856 * 60.87260 * 9 7 2 24 24 C 1.53004 * 117.49612 * 129.53093 * 9 7 2 25 25 H 0.96998 * 120.00031 * 5.00245 * 1 2 3 26 26 H 1.09003 * 109.46628 * 174.94434 * 10 9 7 27 27 H 1.08991 * 109.46960 * 54.95118 * 10 9 7 28 28 H 1.08999 * 109.47448 * 64.98032 * 12 11 10 29 29 H 1.08997 * 109.46987 * 304.97689 * 12 11 10 30 30 H 1.08997 * 109.47236 * 299.99937 * 15 13 12 31 31 H 1.08993 * 109.46788 * 60.00212 * 15 13 12 32 32 H 1.09005 * 109.47160 * 299.99794 * 16 15 13 33 33 H 1.09006 * 109.46713 * 180.02562 * 16 15 13 34 34 H 1.09000 * 109.47393 * 179.97438 * 17 16 15 35 35 H 1.08997 * 109.47194 * 60.00077 * 17 16 15 36 36 H 1.09005 * 109.47191 * 179.97438 * 18 17 16 37 37 H 1.09005 * 109.47021 * 299.99897 * 18 17 16 38 38 H 1.09000 * 109.47061 * 55.00138 * 21 19 18 39 39 H 1.09002 * 109.47093 * 174.99867 * 21 19 18 40 40 H 1.00904 * 110.99958 * 179.97438 * 22 21 19 41 41 H 1.00896 * 111.00325 * 303.95548 * 22 21 19 42 42 H 1.09002 * 117.49429 * 215.00092 * 23 9 7 43 43 H 1.09000 * 117.49667 * 0.02562 * 23 9 7 44 44 H 1.08997 * 117.50046 * 359.97438 * 24 9 7 45 45 H 1.09008 * 117.49704 * 144.97381 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0813 -1.1958 0.0844 9 6 1.2557 -2.4965 -0.1160 10 6 0.7128 -3.0653 1.1965 11 8 1.8032 -3.4134 2.0519 12 6 1.4080 -4.0600 3.2634 13 6 2.6355 -4.2731 4.1516 14 1 3.1195 -3.3146 4.3387 15 6 3.6177 -5.2116 3.4476 16 6 4.8448 -5.4252 4.3360 17 6 4.4104 -6.0457 5.6653 18 6 3.4282 -5.1072 6.3693 19 6 2.2010 -4.8936 5.4810 20 1 1.7169 -5.8520 5.2936 21 6 1.2192 -3.9547 6.1847 22 7 0.7102 -4.6011 7.4016 23 6 0.4258 -2.7235 -1.3812 24 6 1.7326 -3.4934 -1.1743 25 1 -0.4850 0.8368 -0.0732 26 1 0.1164 -3.9536 0.9883 27 1 0.0908 -2.3168 1.6870 28 1 0.9565 -5.0243 3.0302 29 1 0.6837 -3.4371 3.7881 30 1 3.1337 -6.1702 3.2605 31 1 3.9269 -4.7697 2.5004 32 1 5.3290 -4.4668 4.5235 33 1 5.5448 -6.0935 3.8343 34 1 5.2847 -6.1983 6.2981 35 1 3.9263 -7.0041 5.4780 36 1 3.1183 -5.5495 7.3162 37 1 3.9124 -4.1488 6.5568 38 1 1.7292 -3.0290 6.4511 39 1 0.3873 -3.7318 5.5166 40 1 0.0594 -4.0004 7.8851 41 1 0.2895 -5.4931 7.1884 42 1 -0.5070 -3.2781 -1.2785 43 1 0.4219 -1.9309 -2.1295 44 1 2.5877 -3.2069 -1.7864 45 1 1.6599 -4.5544 -0.9353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089535426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:50 Heat of formation + Delta-G solvation = -54.211379 kcal Electronic energy + Delta-G solvation = -21265.349638 eV Core-core repulsion = 18282.128271 eV Total energy + Delta-G solvation = -2983.221367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.27533 -37.26072 -35.46243 -34.60676 -31.87857 -31.52040 -30.18265 -26.60666 -25.36293 -24.50966 -24.40084 -21.31166 -21.01991 -20.68838 -19.73104 -19.05203 -16.35468 -15.94967 -15.57808 -15.17592 -14.80201 -14.54218 -14.36750 -14.36321 -13.97163 -13.74177 -13.46844 -12.96646 -12.33552 -12.24934 -11.90175 -11.78437 -11.59409 -11.39767 -11.10057 -10.91077 -10.85582 -10.83141 -10.61310 -10.45213 -10.27192 -10.16527 -9.91864 -9.79563 -9.43695 -8.98046 -8.70355 -8.50317 -8.36609 -8.06631 -5.98509 -4.02228 3.34996 3.38756 3.42578 4.32642 4.45770 4.48638 4.69780 4.94483 4.98759 5.13993 5.28456 5.31545 5.39244 5.46601 5.55943 5.59681 5.67315 5.72010 5.76385 5.82769 5.90493 5.93845 6.02593 6.17336 6.27436 6.29053 6.31057 6.34036 6.36435 6.40074 6.46398 6.62262 6.68503 6.76607 6.77408 6.85739 7.00315 7.11169 7.30453 7.48276 7.55155 7.94613 8.22541 8.52765 8.98535 9.62412 11.11002 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019022 B = 0.004744 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.659226 B = 5900.266244 C = 6145.685383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.478 4.478 8 H 0.060 0.940 9 C 0.045 3.955 10 C 0.110 3.890 11 O -0.369 6.369 12 C 0.063 3.937 13 C -0.078 4.078 14 H 0.079 0.921 15 C -0.108 4.108 16 C -0.120 4.120 17 C -0.120 4.120 18 C -0.102 4.102 19 C -0.075 4.075 20 H 0.066 0.934 21 C 0.057 3.943 22 N -0.850 5.850 23 C -0.153 4.153 24 C -0.205 4.205 25 H 0.259 0.741 26 H 0.011 0.989 27 H 0.051 0.949 28 H 0.032 0.968 29 H 0.040 0.960 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.033 0.967 40 H 0.339 0.661 41 H 0.337 0.663 42 H 0.061 0.939 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.604 -10.801 11.325 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.516 4.516 8 H 0.078 0.922 9 C 0.044 3.956 10 C 0.034 3.966 11 O -0.288 6.288 12 C -0.014 4.014 13 C -0.097 4.097 14 H 0.097 0.903 15 C -0.145 4.145 16 C -0.158 4.158 17 C -0.158 4.158 18 C -0.140 4.140 19 C -0.094 4.094 20 H 0.084 0.916 21 C -0.074 4.074 22 N -0.379 5.379 23 C -0.190 4.190 24 C -0.243 4.243 25 H 0.069 0.931 26 H 0.029 0.971 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.080 0.920 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.393 -10.610 11.579 16.067 hybrid contribution -0.992 0.972 -0.495 1.474 sum 2.401 -9.638 11.084 14.883 Atomic orbital electron populations 1.69998 1.05820 1.26747 1.49867 1.24961 0.94811 0.98817 0.94841 0.86714 0.79675 0.83250 0.78716 1.20278 1.21389 1.20175 1.20373 0.92750 0.88516 1.49937 0.92204 1.18735 0.98094 0.93815 0.84924 1.22141 0.87631 0.95044 0.91809 1.87953 1.33126 1.78207 1.29500 1.22465 0.95995 0.95575 0.87402 1.21104 0.95765 0.99804 0.93018 0.90306 1.21474 0.95134 0.98819 0.99094 1.21562 0.97794 1.00747 0.95677 1.21568 0.98776 0.98807 0.96616 1.21445 0.94707 0.99610 0.98236 1.21109 0.95953 0.98304 0.94056 0.91587 1.22004 0.97387 0.97669 0.90292 1.58735 1.45225 1.08059 1.25888 1.22522 0.92147 1.01344 1.03003 1.22949 0.98284 0.95720 1.07321 0.93127 0.97061 0.93032 0.94937 0.94146 0.92676 0.90525 0.92041 0.92432 0.92524 0.92436 0.91123 0.92310 0.90873 0.94842 0.84905 0.85114 0.92018 0.89804 0.90440 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 12.90 55.43 0.72 -24.63 16 2 C 0.07 1.88 5.40 -17.82 -0.10 1.79 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.48 -13.42 8.76 -34.44 -0.30 -13.72 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.04 1.14 1.60 -155.66 -0.25 0.89 16 10 C 0.11 2.59 5.76 37.16 0.21 2.80 16 11 O -0.37 -8.10 9.73 -35.23 -0.34 -8.44 16 12 C 0.06 1.07 5.08 37.16 0.19 1.26 16 13 C -0.08 -1.12 1.97 -90.61 -0.18 -1.30 16 14 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.11 -1.50 5.09 -26.73 -0.14 -1.64 16 16 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 17 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 18 C -0.10 -1.13 5.09 -26.73 -0.14 -1.27 16 19 C -0.08 -0.89 1.86 -90.62 -0.17 -1.05 16 20 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 21 C 0.06 0.65 5.96 -3.83 -0.02 0.63 16 22 N -0.85 -8.12 9.08 -10.37 -0.09 -8.21 16 23 C -0.15 -3.65 9.42 -26.69 -0.25 -3.90 16 24 C -0.21 -4.67 9.96 -26.69 -0.27 -4.93 16 25 H 0.26 7.10 8.32 -40.82 -0.34 6.76 16 26 H 0.01 0.24 8.09 -51.93 -0.42 -0.18 16 27 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.68 6.15 -51.93 -0.32 0.36 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.25 7.77 -51.93 -0.40 0.84 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.77 7.75 -51.93 -0.40 0.36 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.03 0.41 6.11 -51.93 -0.32 0.09 16 40 H 0.34 2.79 9.08 -39.29 -0.36 2.43 16 41 H 0.34 2.84 8.99 -39.29 -0.35 2.48 16 42 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.08 2.11 8.14 -51.93 -0.42 1.69 16 44 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 45 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 LS Contribution 352.57 15.07 5.31 5.31 Total: -1.00 -28.96 352.57 -9.61 -38.57 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -8.46 Total: 4.33 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -1.72 Total: -23.43 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.62 Total: -32.84 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.34 Total: -8.44 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.96 -9.61 -38.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089535426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.645 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds