Wall clock time and date at job start Mon Mar 30 2020 06:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99646 * 2 1 4 4 H 1.48504 * 109.46977 * 240.00122 * 3 2 1 5 5 H 1.48500 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47063 * 120.00420 * 3 2 1 7 7 C 1.37877 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99974 * 185.14434 * 7 2 1 9 9 C 1.50699 * 119.99866 * 5.14964 * 7 2 1 10 10 C 1.53000 * 115.54799 * 275.19716 * 9 7 2 11 11 O 1.42894 * 109.47374 * 294.94235 * 10 9 7 12 12 C 1.42899 * 114.00017 * 184.98003 * 11 10 9 13 13 C 1.52998 * 109.47042 * 184.98154 * 12 11 10 14 14 H 1.09001 * 109.47729 * 56.83333 * 13 12 11 15 15 C 1.53009 * 109.46981 * 296.82988 * 13 12 11 16 16 C 1.53003 * 109.46885 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47445 * 59.99962 * 16 15 13 18 18 C 1.52999 * 109.47141 * 299.99921 * 17 16 15 19 19 C 1.53001 * 109.47334 * 60.00031 * 18 17 16 20 20 H 1.08997 * 109.46877 * 59.99919 * 19 18 17 21 21 C 1.52999 * 109.47334 * 180.02562 * 19 18 17 22 22 N 1.46895 * 109.46938 * 294.99880 * 21 19 18 23 23 C 1.53003 * 117.49856 * 60.87260 * 9 7 2 24 24 C 1.53004 * 117.49612 * 129.53093 * 9 7 2 25 25 H 0.96998 * 120.00031 * 5.00245 * 1 2 3 26 26 H 1.09003 * 109.46628 * 174.94434 * 10 9 7 27 27 H 1.08991 * 109.46960 * 54.95118 * 10 9 7 28 28 H 1.08999 * 109.47448 * 64.98032 * 12 11 10 29 29 H 1.08997 * 109.46987 * 304.97689 * 12 11 10 30 30 H 1.08997 * 109.47236 * 299.99937 * 15 13 12 31 31 H 1.08993 * 109.46788 * 60.00212 * 15 13 12 32 32 H 1.09005 * 109.47160 * 299.99794 * 16 15 13 33 33 H 1.09006 * 109.46713 * 180.02562 * 16 15 13 34 34 H 1.09000 * 109.47393 * 179.97438 * 17 16 15 35 35 H 1.08997 * 109.47194 * 60.00077 * 17 16 15 36 36 H 1.09005 * 109.47191 * 179.97438 * 18 17 16 37 37 H 1.09005 * 109.47021 * 299.99897 * 18 17 16 38 38 H 1.09000 * 109.47061 * 55.00138 * 21 19 18 39 39 H 1.09002 * 109.47093 * 174.99867 * 21 19 18 40 40 H 1.00904 * 110.99958 * 179.97438 * 22 21 19 41 41 H 1.00896 * 111.00325 * 303.95548 * 22 21 19 42 42 H 1.09002 * 117.49429 * 215.00092 * 23 9 7 43 43 H 1.09000 * 117.49667 * 0.02562 * 23 9 7 44 44 H 1.08997 * 117.50046 * 359.97438 * 24 9 7 45 45 H 1.09008 * 117.49704 * 144.97381 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0813 -1.1958 0.0844 9 6 1.2557 -2.4965 -0.1160 10 6 0.7128 -3.0653 1.1965 11 8 1.8032 -3.4134 2.0519 12 6 1.4080 -4.0600 3.2634 13 6 2.6355 -4.2731 4.1516 14 1 3.1195 -3.3146 4.3387 15 6 3.6177 -5.2116 3.4476 16 6 4.8448 -5.4252 4.3360 17 6 4.4104 -6.0457 5.6653 18 6 3.4282 -5.1072 6.3693 19 6 2.2010 -4.8936 5.4810 20 1 1.7169 -5.8520 5.2936 21 6 1.2192 -3.9547 6.1847 22 7 0.7102 -4.6011 7.4016 23 6 0.4258 -2.7235 -1.3812 24 6 1.7326 -3.4934 -1.1743 25 1 -0.4850 0.8368 -0.0732 26 1 0.1164 -3.9536 0.9883 27 1 0.0908 -2.3168 1.6870 28 1 0.9565 -5.0243 3.0302 29 1 0.6837 -3.4371 3.7881 30 1 3.1337 -6.1702 3.2605 31 1 3.9269 -4.7697 2.5004 32 1 5.3290 -4.4668 4.5235 33 1 5.5448 -6.0935 3.8343 34 1 5.2847 -6.1983 6.2981 35 1 3.9263 -7.0041 5.4780 36 1 3.1183 -5.5495 7.3162 37 1 3.9124 -4.1488 6.5568 38 1 1.7292 -3.0290 6.4511 39 1 0.3873 -3.7318 5.5166 40 1 0.0594 -4.0004 7.8851 41 1 0.2895 -5.4931 7.1884 42 1 -0.5070 -3.2781 -1.2785 43 1 0.4219 -1.9309 -2.1295 44 1 2.5877 -3.2069 -1.7864 45 1 1.6599 -4.5544 -0.9353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089535426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:50 Heat of formation + Delta-G solvation = -70.932241 kcal Electronic energy + Delta-G solvation = -21266.074709 eV Core-core repulsion = 18282.128271 eV Total energy + Delta-G solvation = -2983.946438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.40082 -38.97644 -37.17826 -35.49861 -33.99103 -32.68200 -31.11828 -28.32267 -27.22762 -26.01018 -25.42284 -22.93349 -22.35451 -21.71534 -21.09119 -20.67379 -18.23122 -17.21319 -16.89176 -16.84306 -16.39295 -15.97197 -15.62463 -15.46706 -15.28169 -15.02276 -14.64803 -14.53999 -13.85533 -13.53376 -13.30887 -13.02959 -12.91506 -12.87735 -12.75081 -12.64239 -12.41101 -12.27527 -12.06321 -11.84413 -11.78701 -11.40422 -11.30740 -10.94189 -10.93142 -10.76871 -10.44398 -10.30569 -9.98853 -9.52459 -8.11250 -6.20839 1.40315 1.41262 1.48824 2.42813 2.84249 3.17846 3.54204 3.58771 3.70768 3.93064 4.01609 4.06107 4.26381 4.29664 4.41395 4.46244 4.49684 4.51789 4.58166 4.62324 4.65572 4.68879 4.74973 4.80274 4.87679 4.92440 4.92798 4.98952 5.06988 5.21561 5.25579 5.31012 5.33281 5.37152 5.40627 5.57516 5.60834 5.61593 5.64717 5.77980 6.20904 6.39009 6.61365 6.62341 6.82913 7.46305 8.97437 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019022 B = 0.004744 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.659226 B = 5900.266244 C = 6145.685383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.025 3.975 3 Si 0.946 3.054 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.497 4.497 8 H 0.044 0.956 9 C 0.008 3.992 10 C 0.124 3.876 11 O -0.390 6.390 12 C 0.058 3.942 13 C -0.072 4.072 14 H 0.057 0.943 15 C -0.105 4.105 16 C -0.117 4.117 17 C -0.115 4.115 18 C -0.098 4.098 19 C -0.066 4.066 20 H 0.076 0.924 21 C 0.060 3.940 22 N -0.847 5.847 23 C -0.150 4.150 24 C -0.183 4.183 25 H 0.260 0.740 26 H 0.031 0.969 27 H 0.021 0.979 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.022 0.978 40 H 0.348 0.652 41 H 0.346 0.654 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.998 -12.211 12.326 17.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.175 4.175 3 Si 0.772 3.228 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.008 3.992 10 C 0.047 3.953 11 O -0.309 6.309 12 C -0.018 4.018 13 C -0.092 4.092 14 H 0.075 0.925 15 C -0.143 4.143 16 C -0.155 4.155 17 C -0.152 4.152 18 C -0.135 4.135 19 C -0.085 4.085 20 H 0.095 0.905 21 C -0.071 4.071 22 N -0.377 5.377 23 C -0.188 4.188 24 C -0.220 4.220 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.041 0.959 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.787 -12.031 12.587 17.819 hybrid contribution -1.110 1.381 -0.780 1.936 sum 2.677 -10.650 11.807 16.125 Atomic orbital electron populations 1.70087 1.06847 1.27426 1.50462 1.25614 0.95615 1.01682 0.94553 0.85808 0.78618 0.79687 0.78718 1.19613 1.20657 1.20170 1.20585 0.92303 0.90350 1.50266 0.93754 1.18916 0.99642 0.94188 0.86486 1.21808 0.87599 0.94856 0.91028 1.87921 1.33106 1.78823 1.31093 1.22727 0.97402 0.95739 0.85965 1.21077 0.94734 0.99286 0.94059 0.92451 1.21429 0.96031 0.98687 0.98140 1.21540 0.96887 1.00813 0.96260 1.21544 0.99249 0.98740 0.95715 1.21407 0.94283 0.99457 0.98359 1.21029 0.96545 0.98371 0.92540 0.90529 1.21879 0.96936 0.97384 0.90862 1.58687 1.45787 1.08559 1.24689 1.22443 0.93445 1.01263 1.01628 1.22939 0.97435 0.96456 1.05161 0.93102 0.95066 0.96053 0.93338 0.94318 0.91684 0.93499 0.92907 0.91290 0.91023 0.91465 0.90273 0.93213 0.92026 0.95944 0.83945 0.84090 0.90360 0.91761 0.90533 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.72 12.90 21.45 0.28 -52.44 16 2 C 0.02 1.41 5.40 84.65 0.46 1.86 16 3 Si 0.95 44.65 29.54 68.60 2.03 46.68 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.50 -28.44 8.76 25.60 0.22 -28.22 16 8 H 0.04 2.59 7.82 -2.91 -0.02 2.57 16 9 C 0.01 0.41 1.60 -52.93 -0.08 0.33 16 10 C 0.12 5.86 5.76 71.98 0.41 6.27 16 11 O -0.39 -17.33 9.73 -148.98 -1.45 -18.78 16 12 C 0.06 1.97 5.08 71.98 0.37 2.34 16 13 C -0.07 -2.07 1.97 -10.79 -0.02 -2.09 16 14 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 15 C -0.11 -2.86 5.09 30.60 0.16 -2.70 16 16 C -0.12 -2.60 5.92 30.59 0.18 -2.42 16 17 C -0.12 -2.11 5.92 30.59 0.18 -1.93 16 18 C -0.10 -1.95 5.09 30.59 0.16 -1.80 16 19 C -0.07 -1.45 1.86 -10.79 -0.02 -1.47 16 20 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 21 C 0.06 1.33 5.96 86.30 0.51 1.85 16 22 N -0.85 -14.61 9.08 -186.73 -1.70 -16.31 16 23 C -0.15 -7.13 9.42 30.62 0.29 -6.84 16 24 C -0.18 -8.12 9.96 30.62 0.30 -7.81 16 25 H 0.26 14.38 8.32 -92.71 -0.77 13.61 16 26 H 0.03 1.33 8.09 -2.39 -0.02 1.31 16 27 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 29 H 0.04 1.32 6.15 -2.39 -0.01 1.30 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 1.54 7.77 -2.39 -0.02 1.52 16 32 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.49 7.75 -2.38 -0.02 1.48 16 37 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.02 0.54 6.11 -2.39 -0.01 0.53 16 40 H 0.35 5.15 9.08 -89.69 -0.81 4.33 16 41 H 0.35 5.01 8.99 -89.70 -0.81 4.21 16 42 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 43 H 0.06 3.26 8.14 -2.39 -0.02 3.24 16 44 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 45 H 0.09 3.49 8.14 -2.38 -0.02 3.47 16 Total: -1.00 -61.95 352.57 1.61 -60.34 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: -0.67 Total: 23.15 kcal Atomic # 6 Polarization: -45.76 SS G_CDS: 3.12 Total: -42.64 kcal Atomic # 7 Polarization: -67.33 SS G_CDS: -1.42 Total: -68.75 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -1.45 Total: -18.78 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -61.95 1.61 -60.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089535426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.591 kcal (2) G-P(sol) polarization free energy of solvation -61.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds