Wall clock time and date at job start Mon Mar 30 2020 06:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00069 * 2 1 4 4 H 1.48501 * 109.47493 * 270.00808 * 3 2 1 5 5 H 1.48504 * 109.47246 * 30.00558 * 3 2 1 6 6 H 1.48503 * 109.47076 * 150.00487 * 3 2 1 7 7 C 1.37876 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00045 * 178.51185 * 7 2 1 9 9 C 1.50705 * 119.99759 * 358.51495 * 7 2 1 10 10 C 1.52997 * 115.55328 * 84.95424 * 9 7 2 11 11 O 1.42901 * 109.47204 * 39.89434 * 10 9 7 12 12 C 1.42896 * 114.00446 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47589 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.46783 * 305.00423 * 13 12 11 15 15 C 1.53001 * 109.46822 * 65.00095 * 13 12 11 16 16 C 1.52999 * 109.46822 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47309 * 299.99922 * 16 15 13 18 18 C 1.53001 * 109.47115 * 60.00257 * 17 16 15 19 19 C 1.52997 * 109.47309 * 185.00018 * 13 12 11 20 20 H 1.09004 * 109.47316 * 300.00398 * 19 13 12 21 21 C 1.53005 * 109.46977 * 59.99911 * 19 13 12 22 22 N 1.46902 * 109.47070 * 184.99719 * 21 19 13 23 23 C 1.53001 * 117.51558 * 230.65134 * 9 7 2 24 24 C 1.53004 * 117.49627 * 299.28022 * 9 7 2 25 25 H 0.97000 * 120.00120 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47180 * 279.89733 * 10 9 7 27 27 H 1.08995 * 109.47516 * 159.89257 * 10 9 7 28 28 H 1.09003 * 109.46710 * 300.00423 * 12 11 10 29 29 H 1.09006 * 109.46787 * 60.00049 * 12 11 10 30 30 H 1.09004 * 109.47058 * 299.99628 * 15 13 12 31 31 H 1.08994 * 109.47417 * 60.00206 * 15 13 12 32 32 H 1.09001 * 109.47174 * 179.97438 * 16 15 13 33 33 H 1.09004 * 109.47257 * 60.00356 * 16 15 13 34 34 H 1.08994 * 109.47113 * 299.99906 * 17 16 15 35 35 H 1.09004 * 109.47166 * 179.97438 * 17 16 15 36 36 H 1.08994 * 109.47104 * 180.02562 * 18 17 16 37 37 H 1.09000 * 109.47174 * 59.99474 * 18 17 16 38 38 H 1.09000 * 109.47610 * 304.99792 * 21 19 13 39 39 H 1.08994 * 109.46956 * 65.00225 * 21 19 13 40 40 H 1.00911 * 110.99699 * 56.04941 * 22 21 19 41 41 H 1.00897 * 111.00159 * 179.97438 * 22 21 19 42 42 H 1.08997 * 117.50113 * 214.96978 * 23 9 7 43 43 H 1.09001 * 117.49940 * 359.97438 * 23 9 7 44 44 H 1.08998 * 117.49842 * 359.97438 * 24 9 7 45 45 H 1.08993 * 117.49531 * 145.00284 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0843 -1.1942 -0.0248 9 6 1.2514 -2.4990 0.0327 10 6 0.7856 -3.0269 -1.3257 11 8 1.8063 -2.8011 -2.2999 12 6 1.4701 -3.2594 -3.6110 13 6 2.6288 -2.9670 -4.5664 14 1 2.8735 -1.9056 -4.5264 15 6 3.8513 -3.7882 -4.1517 16 6 5.0102 -3.4953 -5.1067 17 6 4.6033 -3.8711 -6.5328 18 6 3.3808 -3.0499 -6.9475 19 6 2.2215 -3.3432 -5.9923 20 1 1.9767 -4.4047 -6.0322 21 6 0.9989 -2.5220 -6.4070 22 7 0.5353 -2.9670 -7.7280 23 6 1.6666 -3.5281 1.0859 24 6 0.3502 -2.7639 1.2405 25 1 -0.4850 0.8400 0.0004 26 1 -0.1241 -2.5064 -1.6252 27 1 0.5849 -4.0956 -1.2508 28 1 1.2832 -4.3330 -3.5837 29 1 0.5747 -2.7434 -3.9577 30 1 4.1415 -3.5201 -3.1358 31 1 3.6066 -4.8496 -4.1915 32 1 5.8813 -4.0800 -4.8110 33 1 5.2549 -2.4338 -5.0663 34 1 4.3588 -4.9325 -6.5731 35 1 5.4288 -3.6619 -7.2133 36 1 3.0906 -3.3179 -7.9634 37 1 3.6254 -1.9884 -6.9072 38 1 0.2023 -2.6620 -5.6763 39 1 1.2685 -1.4670 -6.4530 40 1 0.3403 -3.9571 -7.7282 41 1 -0.2723 -2.4397 -8.0243 42 1 1.6079 -4.5813 0.8112 43 1 2.4850 -3.2617 1.7548 44 1 0.3024 -1.9945 2.0111 45 1 -0.5745 -3.3142 1.0672 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089535427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:53 Heat of formation + Delta-G solvation = -52.430232 kcal Electronic energy + Delta-G solvation = -21390.157070 eV Core-core repulsion = 18407.012940 eV Total energy + Delta-G solvation = -2983.144131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.23286 -37.20982 -35.45897 -34.57664 -31.82591 -31.49424 -30.14930 -26.58792 -25.27721 -24.51143 -24.36573 -21.26623 -21.03742 -20.65422 -19.69806 -19.03335 -16.37267 -15.89397 -15.46080 -15.19955 -14.77153 -14.53751 -14.33162 -14.29903 -13.96147 -13.68681 -13.43023 -12.88336 -12.35029 -12.23408 -11.86527 -11.75745 -11.58674 -11.40774 -11.04736 -10.88924 -10.83657 -10.79904 -10.58727 -10.40912 -10.24401 -10.11454 -9.88168 -9.77216 -9.38463 -8.94242 -8.71384 -8.55022 -8.32997 -7.96502 -5.93888 -3.95981 3.35875 3.41743 3.45749 4.38093 4.48957 4.53440 4.73582 4.98026 5.03226 5.17509 5.32752 5.36468 5.40405 5.43667 5.58844 5.63654 5.70346 5.75906 5.78961 5.85646 5.94255 5.97096 6.07249 6.18486 6.30331 6.31253 6.33074 6.36160 6.37831 6.43807 6.44499 6.64657 6.72487 6.73253 6.77919 6.91141 7.03014 7.11312 7.32953 7.44268 7.53087 7.98712 8.25449 8.58886 9.02973 9.67597 11.16283 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017591 B = 0.005155 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.341153 B = 5430.258963 C = 5608.494812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.468 4.468 8 H 0.059 0.941 9 C 0.043 3.957 10 C 0.111 3.889 11 O -0.357 6.357 12 C 0.062 3.938 13 C -0.078 4.078 14 H 0.080 0.920 15 C -0.108 4.108 16 C -0.120 4.120 17 C -0.120 4.120 18 C -0.103 4.103 19 C -0.075 4.075 20 H 0.065 0.935 21 C 0.057 3.943 22 N -0.850 5.850 23 C -0.211 4.211 24 C -0.151 4.151 25 H 0.257 0.743 26 H 0.043 0.957 27 H 0.012 0.988 28 H 0.031 0.969 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.034 0.966 39 H 0.073 0.927 40 H 0.337 0.663 41 H 0.339 0.661 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.836 -7.808 -12.609 15.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.134 4.134 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.506 4.506 8 H 0.077 0.923 9 C 0.042 3.958 10 C 0.034 3.966 11 O -0.275 6.275 12 C -0.016 4.016 13 C -0.097 4.097 14 H 0.098 0.902 15 C -0.145 4.145 16 C -0.158 4.158 17 C -0.157 4.157 18 C -0.140 4.140 19 C -0.094 4.094 20 H 0.084 0.916 21 C -0.074 4.074 22 N -0.379 5.379 23 C -0.248 4.248 24 C -0.189 4.189 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.030 0.970 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.091 0.909 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.573 -7.338 -12.809 15.188 hybrid contribution -0.927 0.528 0.472 1.167 sum 2.646 -6.810 -12.337 14.338 Atomic orbital electron populations 1.69999 1.05813 1.26137 1.50689 1.24931 0.94791 0.98755 0.94901 0.86640 0.79912 0.83622 0.78085 1.20701 1.21441 1.19915 1.20274 0.92348 0.88187 1.49836 0.92267 1.18762 0.98176 0.93892 0.84932 1.22016 0.90061 0.94644 0.89832 1.88035 1.41680 1.81982 1.15803 1.22469 0.96600 0.96813 0.85701 1.21084 0.94945 1.01429 0.92211 0.90205 1.21480 0.94127 0.99022 0.99900 1.21561 0.97959 1.01460 0.94810 1.21568 0.97745 0.99817 0.96606 1.21454 0.93751 0.99901 0.98906 1.21113 0.94767 0.99302 0.94207 0.91631 1.22008 0.96444 0.99978 0.88922 1.58756 1.41210 1.08967 1.28948 1.23068 0.99207 0.95563 1.07007 1.22493 0.91445 1.01385 1.03544 0.93330 0.93842 0.96991 0.95096 0.94237 0.90497 0.92732 0.92453 0.92012 0.92453 0.92549 0.91152 0.92300 0.94810 0.90868 0.85165 0.84938 0.91853 0.90400 0.89689 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 12.80 55.43 0.71 -24.88 16 2 C 0.07 1.90 5.41 -17.82 -0.10 1.81 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.47 -13.16 8.24 -34.44 -0.28 -13.44 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.04 1.09 1.81 -155.66 -0.28 0.81 16 10 C 0.11 2.59 6.01 37.16 0.22 2.82 16 11 O -0.36 -8.03 9.26 -35.23 -0.33 -8.35 16 12 C 0.06 1.08 5.11 37.16 0.19 1.27 16 13 C -0.08 -1.17 1.95 -90.62 -0.18 -1.34 16 14 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 15 C -0.11 -1.55 5.10 -26.73 -0.14 -1.69 16 16 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 17 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 18 C -0.10 -1.18 5.09 -26.70 -0.14 -1.31 16 19 C -0.07 -0.92 1.86 -90.59 -0.17 -1.08 16 20 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 21 C 0.06 0.68 5.96 -3.82 -0.02 0.66 16 22 N -0.85 -8.42 9.08 -10.37 -0.09 -8.51 16 23 C -0.21 -4.76 9.88 -26.73 -0.26 -5.02 16 24 C -0.15 -3.61 9.33 -26.73 -0.25 -3.86 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.01 0.25 7.95 -51.93 -0.41 -0.16 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.04 0.69 6.07 -51.93 -0.32 0.37 16 30 H 0.08 1.29 7.82 -51.93 -0.41 0.88 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.79 7.75 -51.93 -0.40 0.39 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.03 0.43 6.07 -51.93 -0.32 0.12 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.34 2.93 8.99 -39.29 -0.35 2.57 16 41 H 0.34 2.91 9.08 -39.29 -0.36 2.55 16 42 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 43 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 44 H 0.08 2.16 8.14 -51.93 -0.42 1.73 16 45 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 351.54 15.07 5.30 5.30 Total: -1.00 -29.21 351.54 -9.60 -38.81 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -8.45 Total: 4.36 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: -1.72 Total: -23.49 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.62 Total: -33.40 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.33 Total: -8.35 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.21 -9.60 -38.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089535427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.616 kcal (2) G-P(sol) polarization free energy of solvation -29.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds