Wall clock time and date at job start Mon Mar 30 2020 06:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00069 * 2 1 4 4 H 1.48501 * 109.47493 * 270.00808 * 3 2 1 5 5 H 1.48504 * 109.47246 * 30.00558 * 3 2 1 6 6 H 1.48503 * 109.47076 * 150.00487 * 3 2 1 7 7 C 1.37876 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00045 * 178.51185 * 7 2 1 9 9 C 1.50705 * 119.99759 * 358.51495 * 7 2 1 10 10 C 1.52997 * 115.55328 * 84.95424 * 9 7 2 11 11 O 1.42901 * 109.47204 * 39.89434 * 10 9 7 12 12 C 1.42896 * 114.00446 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47589 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.46783 * 305.00423 * 13 12 11 15 15 C 1.53001 * 109.46822 * 65.00095 * 13 12 11 16 16 C 1.52999 * 109.46822 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47309 * 299.99922 * 16 15 13 18 18 C 1.53001 * 109.47115 * 60.00257 * 17 16 15 19 19 C 1.52997 * 109.47309 * 185.00018 * 13 12 11 20 20 H 1.09004 * 109.47316 * 300.00398 * 19 13 12 21 21 C 1.53005 * 109.46977 * 59.99911 * 19 13 12 22 22 N 1.46902 * 109.47070 * 184.99719 * 21 19 13 23 23 C 1.53001 * 117.51558 * 230.65134 * 9 7 2 24 24 C 1.53004 * 117.49627 * 299.28022 * 9 7 2 25 25 H 0.97000 * 120.00120 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47180 * 279.89733 * 10 9 7 27 27 H 1.08995 * 109.47516 * 159.89257 * 10 9 7 28 28 H 1.09003 * 109.46710 * 300.00423 * 12 11 10 29 29 H 1.09006 * 109.46787 * 60.00049 * 12 11 10 30 30 H 1.09004 * 109.47058 * 299.99628 * 15 13 12 31 31 H 1.08994 * 109.47417 * 60.00206 * 15 13 12 32 32 H 1.09001 * 109.47174 * 179.97438 * 16 15 13 33 33 H 1.09004 * 109.47257 * 60.00356 * 16 15 13 34 34 H 1.08994 * 109.47113 * 299.99906 * 17 16 15 35 35 H 1.09004 * 109.47166 * 179.97438 * 17 16 15 36 36 H 1.08994 * 109.47104 * 180.02562 * 18 17 16 37 37 H 1.09000 * 109.47174 * 59.99474 * 18 17 16 38 38 H 1.09000 * 109.47610 * 304.99792 * 21 19 13 39 39 H 1.08994 * 109.46956 * 65.00225 * 21 19 13 40 40 H 1.00911 * 110.99699 * 56.04941 * 22 21 19 41 41 H 1.00897 * 111.00159 * 179.97438 * 22 21 19 42 42 H 1.08997 * 117.50113 * 214.96978 * 23 9 7 43 43 H 1.09001 * 117.49940 * 359.97438 * 23 9 7 44 44 H 1.08998 * 117.49842 * 359.97438 * 24 9 7 45 45 H 1.08993 * 117.49531 * 145.00284 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0843 -1.1942 -0.0248 9 6 1.2514 -2.4990 0.0327 10 6 0.7856 -3.0269 -1.3257 11 8 1.8063 -2.8011 -2.2999 12 6 1.4701 -3.2594 -3.6110 13 6 2.6288 -2.9670 -4.5664 14 1 2.8735 -1.9056 -4.5264 15 6 3.8513 -3.7882 -4.1517 16 6 5.0102 -3.4953 -5.1067 17 6 4.6033 -3.8711 -6.5328 18 6 3.3808 -3.0499 -6.9475 19 6 2.2215 -3.3432 -5.9923 20 1 1.9767 -4.4047 -6.0322 21 6 0.9989 -2.5220 -6.4070 22 7 0.5353 -2.9670 -7.7280 23 6 1.6666 -3.5281 1.0859 24 6 0.3502 -2.7639 1.2405 25 1 -0.4850 0.8400 0.0004 26 1 -0.1241 -2.5064 -1.6252 27 1 0.5849 -4.0956 -1.2508 28 1 1.2832 -4.3330 -3.5837 29 1 0.5747 -2.7434 -3.9577 30 1 4.1415 -3.5201 -3.1358 31 1 3.6066 -4.8496 -4.1915 32 1 5.8813 -4.0800 -4.8110 33 1 5.2549 -2.4338 -5.0663 34 1 4.3588 -4.9325 -6.5731 35 1 5.4288 -3.6619 -7.2133 36 1 3.0906 -3.3179 -7.9634 37 1 3.6254 -1.9884 -6.9072 38 1 0.2023 -2.6620 -5.6763 39 1 1.2685 -1.4670 -6.4530 40 1 0.3403 -3.9571 -7.7282 41 1 -0.2723 -2.4397 -8.0243 42 1 1.6079 -4.5813 0.8112 43 1 2.4850 -3.2617 1.7548 44 1 0.3024 -1.9945 2.0111 45 1 -0.5745 -3.3142 1.0672 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089535427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:52 Heat of formation + Delta-G solvation = -69.411486 kcal Electronic energy + Delta-G solvation = -21390.893433 eV Core-core repulsion = 18407.012940 eV Total energy + Delta-G solvation = -2983.880493 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.38660 -38.93756 -37.17872 -35.50349 -33.95583 -32.68017 -31.11916 -28.28695 -27.20078 -25.99250 -25.42558 -22.92406 -22.36690 -21.71362 -21.08539 -20.66548 -18.22662 -17.15501 -16.86842 -16.82064 -16.42756 -15.97661 -15.63488 -15.44034 -15.23943 -14.95008 -14.68389 -14.53764 -13.83640 -13.61831 -13.25715 -13.04202 -12.89028 -12.86467 -12.75656 -12.64870 -12.42863 -12.25208 -12.04336 -11.83156 -11.77619 -11.35468 -11.30612 -10.95883 -10.91055 -10.78156 -10.43696 -10.34861 -9.87193 -9.52296 -8.08239 -6.15484 1.38801 1.40169 1.49442 2.43845 2.92920 3.22118 3.50239 3.56738 3.70886 3.92570 4.01640 4.06349 4.27117 4.32567 4.41260 4.45292 4.48475 4.53842 4.57653 4.62493 4.65804 4.68761 4.74944 4.81620 4.86442 4.92682 4.95106 5.03343 5.06977 5.22657 5.25290 5.30543 5.33026 5.37212 5.40497 5.56382 5.57774 5.62861 5.64703 5.79781 6.20305 6.38646 6.61509 6.69313 6.88299 7.50324 9.01138 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017591 B = 0.005155 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.341153 B = 5430.258963 C = 5608.494812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.024 3.976 3 Si 0.944 3.056 4 H -0.280 1.280 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.483 4.483 8 H 0.043 0.957 9 C 0.005 3.995 10 C 0.122 3.878 11 O -0.383 6.383 12 C 0.058 3.942 13 C -0.073 4.073 14 H 0.053 0.947 15 C -0.105 4.105 16 C -0.118 4.118 17 C -0.114 4.114 18 C -0.098 4.098 19 C -0.065 4.065 20 H 0.078 0.922 21 C 0.061 3.939 22 N -0.846 5.846 23 C -0.186 4.186 24 C -0.151 4.151 25 H 0.257 0.743 26 H 0.019 0.981 27 H 0.037 0.963 28 H 0.050 0.950 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.023 0.977 39 H 0.058 0.942 40 H 0.347 0.653 41 H 0.347 0.653 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.410 -9.170 -13.959 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.770 3.230 4 H -0.207 1.207 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.004 3.996 10 C 0.045 3.955 11 O -0.302 6.302 12 C -0.019 4.019 13 C -0.092 4.092 14 H 0.072 0.928 15 C -0.142 4.142 16 C -0.155 4.155 17 C -0.152 4.152 18 C -0.135 4.135 19 C -0.084 4.084 20 H 0.097 0.903 21 C -0.070 4.070 22 N -0.376 5.376 23 C -0.224 4.224 24 C -0.188 4.188 25 H 0.066 0.934 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.041 0.959 39 H 0.077 0.923 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.148 -8.708 -14.165 17.137 hybrid contribution -1.102 0.926 0.879 1.686 sum 3.047 -7.783 -13.286 15.696 Atomic orbital electron populations 1.70089 1.06809 1.26722 1.51528 1.25568 0.95584 1.01569 0.94802 0.85777 0.78981 0.80228 0.77991 1.20656 1.20704 1.19460 1.20467 0.91851 0.90013 1.49731 0.93863 1.18971 0.99671 0.94289 0.86651 1.21777 0.89080 0.95498 0.89099 1.87997 1.41787 1.82762 1.17649 1.22714 0.97579 0.97691 0.83919 1.21061 0.94535 1.00057 0.93546 0.92824 1.21430 0.94606 0.99450 0.98759 1.21542 0.97492 1.01066 0.95447 1.21541 0.97837 1.00246 0.95544 1.21419 0.93672 0.99440 0.99010 1.21035 0.95224 0.99894 0.92283 0.90338 1.21870 0.96125 0.99248 0.89774 1.58703 1.41842 1.09831 1.27269 1.23070 0.98037 0.96426 1.04818 1.22396 0.92832 1.01384 1.02197 0.93370 0.96304 0.94486 0.93233 0.94557 0.93598 0.91473 0.91208 0.93118 0.91296 0.91027 0.90198 0.93418 0.95929 0.92297 0.84048 0.83966 0.88912 0.90536 0.91948 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.47 12.80 21.45 0.27 -53.19 16 2 C 0.02 1.35 5.41 84.65 0.46 1.81 16 3 Si 0.94 45.36 29.54 68.60 2.03 47.39 16 4 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.48 -27.61 8.24 25.60 0.21 -27.40 16 8 H 0.04 2.54 7.81 -2.91 -0.02 2.51 16 9 C 0.00 0.23 1.81 -52.93 -0.10 0.14 16 10 C 0.12 5.71 6.01 71.98 0.43 6.14 16 11 O -0.38 -17.46 9.26 -148.98 -1.38 -18.84 16 12 C 0.06 2.01 5.11 71.98 0.37 2.37 16 13 C -0.07 -2.18 1.95 -10.79 -0.02 -2.20 16 14 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 15 C -0.10 -2.94 5.10 30.59 0.16 -2.79 16 16 C -0.12 -2.73 5.92 30.59 0.18 -2.55 16 17 C -0.11 -2.18 5.92 30.59 0.18 -2.00 16 18 C -0.10 -2.05 5.09 30.61 0.16 -1.89 16 19 C -0.07 -1.50 1.86 -10.78 -0.02 -1.52 16 20 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 21 C 0.06 1.41 5.96 86.30 0.51 1.92 16 22 N -0.85 -15.19 9.08 -186.71 -1.70 -16.88 16 23 C -0.19 -8.15 9.88 30.60 0.30 -7.85 16 24 C -0.15 -7.15 9.33 30.60 0.29 -6.87 16 25 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 26 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.04 1.52 7.95 -2.39 -0.02 1.50 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.04 1.28 6.07 -2.38 -0.01 1.26 16 30 H 0.05 1.56 7.82 -2.38 -0.02 1.54 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.57 7.75 -2.39 -0.02 1.55 16 37 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.02 0.57 6.07 -2.39 -0.01 0.56 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.35 5.17 8.99 -89.68 -0.81 4.36 16 41 H 0.35 5.39 9.08 -89.70 -0.81 4.57 16 42 H 0.09 3.50 8.08 -2.39 -0.02 3.48 16 43 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 44 H 0.06 3.21 8.14 -2.39 -0.02 3.19 16 45 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -62.85 351.54 1.66 -61.18 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -0.67 Total: 23.02 kcal Atomic # 6 Polarization: -45.79 SS G_CDS: 3.11 Total: -42.68 kcal Atomic # 7 Polarization: -68.66 SS G_CDS: -1.42 Total: -70.08 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -1.38 Total: -18.84 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -62.85 1.66 -61.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089535427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.228 kcal (2) G-P(sol) polarization free energy of solvation -62.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds