Wall clock time and date at job start Mon Mar 30 2020 06:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00233 * 2 1 4 4 H 1.48507 * 109.47097 * 89.99876 * 3 2 1 5 5 H 1.48495 * 109.47265 * 210.00386 * 3 2 1 6 6 H 1.48502 * 109.47116 * 330.00491 * 3 2 1 7 7 C 1.37876 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00368 * 187.11112 * 7 2 1 9 9 C 1.50703 * 119.99546 * 7.11099 * 7 2 1 10 10 C 1.53001 * 115.55078 * 275.21284 * 9 7 2 11 11 O 1.42906 * 109.47214 * 301.49638 * 10 9 7 12 12 C 1.42896 * 113.99888 * 184.88833 * 11 10 9 13 13 C 1.53007 * 109.46766 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.46945 * 55.00154 * 13 12 11 15 15 C 1.52998 * 109.47164 * 295.00045 * 13 12 11 16 16 C 1.53001 * 109.47238 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47102 * 59.99693 * 16 15 13 18 18 C 1.52998 * 109.47325 * 300.00254 * 17 16 15 19 19 C 1.52999 * 109.46877 * 174.99921 * 13 12 11 20 20 H 1.09002 * 109.47651 * 300.00109 * 19 13 12 21 21 C 1.53004 * 109.47269 * 59.99887 * 19 13 12 22 22 N 1.46897 * 109.47241 * 184.99692 * 21 19 13 23 23 C 1.53004 * 117.49618 * 129.54817 * 9 7 2 24 24 C 1.52992 * 117.50030 * 60.88606 * 9 7 2 25 25 H 0.96993 * 120.00035 * 175.38815 * 1 2 3 26 26 H 1.08997 * 109.46938 * 61.49700 * 10 9 7 27 27 H 1.08995 * 109.46751 * 181.49995 * 10 9 7 28 28 H 1.08999 * 109.47254 * 300.00004 * 12 11 10 29 29 H 1.08999 * 109.47228 * 60.00512 * 12 11 10 30 30 H 1.09010 * 109.47105 * 299.99965 * 15 13 12 31 31 H 1.08999 * 109.47309 * 59.99708 * 15 13 12 32 32 H 1.08992 * 109.46977 * 179.97438 * 16 15 13 33 33 H 1.09000 * 109.46646 * 299.99972 * 16 15 13 34 34 H 1.08996 * 109.47184 * 59.99844 * 17 16 15 35 35 H 1.09001 * 109.47070 * 180.02562 * 17 16 15 36 36 H 1.09003 * 109.47238 * 179.97438 * 18 17 16 37 37 H 1.09000 * 109.47279 * 300.00245 * 18 17 16 38 38 H 1.08996 * 109.47157 * 304.99908 * 21 19 13 39 39 H 1.09004 * 109.47008 * 64.99664 * 21 19 13 40 40 H 1.00896 * 111.00147 * 179.97438 * 22 21 19 41 41 H 1.00900 * 111.00290 * 303.95719 * 22 21 19 42 42 H 1.08999 * 117.49946 * 359.97438 * 23 9 7 43 43 H 1.08997 * 117.50180 * 145.02236 * 23 9 7 44 44 H 1.09004 * 117.50078 * 214.97697 * 24 9 7 45 45 H 1.08998 * 117.50038 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4467 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0783 -1.1977 0.1152 9 6 1.2597 -2.4940 -0.1627 10 6 0.6779 -3.0860 1.1226 11 8 1.7302 -3.3084 2.0636 12 6 1.3096 -3.9635 3.2618 13 6 2.5113 -4.1480 4.1909 14 1 2.9859 -3.1827 4.3670 15 6 3.5173 -5.0999 3.5407 16 6 4.7186 -5.2849 4.4700 17 6 4.2474 -5.8725 5.8017 18 6 3.2415 -4.9206 6.4519 19 6 2.0406 -4.7354 5.5229 20 1 1.3239 -4.0573 5.9861 21 6 1.3742 -6.0904 5.2757 22 7 0.8166 -6.5990 6.5360 23 6 1.7682 -3.4719 -1.2239 24 6 0.4680 -2.6980 -1.4559 25 1 -0.4850 -0.8373 -0.0675 26 1 -0.0477 -2.3918 1.5464 27 1 0.1866 -4.0324 0.8968 28 1 0.5542 -3.3572 3.7615 29 1 0.8883 -4.9379 3.0145 30 1 3.0426 -6.0653 3.3646 31 1 3.8525 -4.6815 2.5917 32 1 5.4349 -5.9634 4.0070 33 1 5.1933 -4.3197 4.6465 34 1 3.7726 -6.8376 5.6253 35 1 5.1032 -6.0039 6.4640 36 1 2.9055 -5.3395 7.4005 37 1 3.7162 -3.9554 6.6284 38 1 0.5738 -5.9737 4.5451 39 1 2.1138 -6.7949 4.8951 40 1 0.3703 -7.4934 6.3990 41 1 1.5277 -6.6548 7.2496 42 1 2.6412 -3.1749 -1.8049 43 1 1.6878 -4.5370 -1.0065 44 1 -0.4672 -3.2543 -1.3911 45 1 0.4855 -1.8919 -2.1892 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089535428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:56 Heat of formation + Delta-G solvation = -53.679435 kcal Electronic energy + Delta-G solvation = -21432.199442 eV Core-core repulsion = 18449.001142 eV Total energy + Delta-G solvation = -2983.198300 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.71319 -37.51611 -35.72308 -34.12206 -31.82840 -31.71385 -30.22532 -26.68933 -25.04476 -24.64361 -24.45478 -22.03487 -21.28699 -21.09896 -19.39359 -18.39427 -16.70398 -16.24558 -15.90280 -15.56587 -15.19190 -14.74991 -14.11439 -14.04897 -13.68153 -13.64356 -13.44675 -13.01320 -12.68926 -12.41727 -12.23291 -12.01039 -11.78614 -11.52127 -11.23612 -11.02739 -10.83439 -10.72557 -10.59266 -10.42176 -10.19620 -10.06356 -9.96807 -9.85546 -9.52483 -8.86592 -8.75732 -8.39772 -8.34228 -8.22504 -6.26978 -3.97197 3.48157 3.51546 3.67310 4.24306 4.41559 4.58349 4.67412 4.72014 4.85427 5.08363 5.17822 5.22713 5.28970 5.41414 5.43826 5.45561 5.56145 5.60722 5.64393 5.71925 5.78722 5.93559 5.96643 6.03152 6.06357 6.11933 6.16304 6.22051 6.23983 6.28097 6.36614 6.45404 6.57270 6.59335 6.61362 6.65946 6.88752 6.98470 7.25793 7.27784 7.29917 8.11570 8.37880 8.53971 8.96884 9.75044 11.12689 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022013 B = 0.004654 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.668996 B = 6014.540142 C = 6323.518910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.024 3.976 3 Si 1.069 2.931 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.554 4.554 8 H 0.053 0.947 9 C 0.023 3.977 10 C 0.106 3.894 11 O -0.363 6.363 12 C 0.063 3.937 13 C -0.076 4.076 14 H 0.081 0.919 15 C -0.112 4.112 16 C -0.119 4.119 17 C -0.121 4.121 18 C -0.114 4.114 19 C -0.079 4.079 20 H 0.078 0.922 21 C 0.058 3.942 22 N -0.852 5.852 23 C -0.191 4.191 24 C -0.176 4.176 25 H 0.272 0.728 26 H 0.043 0.957 27 H 0.014 0.986 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.035 0.965 40 H 0.338 0.662 41 H 0.337 0.663 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.856 -13.021 11.209 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.181 4.181 3 Si 0.898 3.102 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.592 4.592 8 H 0.071 0.929 9 C 0.022 3.978 10 C 0.030 3.970 11 O -0.281 6.281 12 C -0.014 4.014 13 C -0.095 4.095 14 H 0.100 0.900 15 C -0.149 4.149 16 C -0.157 4.157 17 C -0.159 4.159 18 C -0.152 4.152 19 C -0.098 4.098 20 H 0.097 0.903 21 C -0.072 4.072 22 N -0.382 5.382 23 C -0.229 4.229 24 C -0.214 4.214 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.032 0.968 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.387 -10.656 11.205 16.073 hybrid contribution 0.445 -2.626 -0.165 2.669 sum 4.832 -13.282 11.040 17.934 Atomic orbital electron populations 1.70719 1.06773 1.31259 1.46009 1.25759 0.96559 1.02229 0.93533 0.83543 0.74720 0.75170 0.76745 1.21532 1.21500 1.21130 1.21200 0.94370 0.89399 1.54231 0.92860 1.19033 0.98404 0.95543 0.84809 1.22159 0.88970 0.95465 0.90444 1.87980 1.34496 1.78737 1.26908 1.22458 0.95983 0.95509 0.87450 1.21070 0.95647 0.99772 0.93017 0.90030 1.21543 0.95294 0.98918 0.99161 1.21537 0.97847 1.00968 0.95299 1.21596 0.98488 0.98756 0.97016 1.21543 0.95722 1.00088 0.97828 1.21095 0.96772 0.96509 0.95409 0.90332 1.22042 0.97842 0.95812 0.91511 1.58757 1.36286 1.33518 1.09621 1.22853 0.97527 0.95545 1.06942 1.22769 0.93263 1.02312 1.03047 0.91710 0.93864 0.96799 0.94184 0.94600 0.92540 0.90620 0.92368 0.91861 0.92375 0.92423 0.92054 0.91609 0.90916 0.94718 0.85033 0.84969 0.90138 0.91576 0.91619 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.32 13.57 55.43 0.75 -26.56 16 2 C 0.02 0.68 5.39 -17.82 -0.10 0.58 16 3 Si 1.07 25.64 29.91 -169.99 -5.08 20.56 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.55 -15.84 8.64 -34.44 -0.30 -16.14 16 8 H 0.05 1.57 7.82 -52.49 -0.41 1.16 16 9 C 0.02 0.58 1.20 -155.66 -0.19 0.39 16 10 C 0.11 2.49 5.72 37.16 0.21 2.71 16 11 O -0.36 -8.09 9.69 -35.23 -0.34 -8.43 16 12 C 0.06 1.10 4.82 37.16 0.18 1.28 16 13 C -0.08 -1.10 2.20 -90.62 -0.20 -1.30 16 14 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 15 C -0.11 -1.52 4.83 -26.73 -0.13 -1.65 16 16 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 17 C -0.12 -1.16 5.65 -26.73 -0.15 -1.31 16 18 C -0.11 -1.14 5.22 -26.75 -0.14 -1.28 16 19 C -0.08 -0.93 2.40 -90.64 -0.22 -1.15 16 20 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 21 C 0.06 0.63 5.32 -3.82 -0.02 0.61 16 22 N -0.85 -8.06 9.62 -10.37 -0.10 -8.16 16 23 C -0.19 -4.33 9.94 -26.69 -0.27 -4.59 16 24 C -0.18 -4.14 8.75 -26.70 -0.23 -4.38 16 25 H 0.27 8.05 6.15 -40.82 -0.25 7.80 16 26 H 0.04 1.09 7.76 -51.93 -0.40 0.68 16 27 H 0.01 0.30 8.10 -51.93 -0.42 -0.13 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.57 6.60 -51.93 -0.34 0.23 16 30 H 0.06 0.73 6.55 -51.92 -0.34 0.39 16 31 H 0.08 1.22 7.82 -51.93 -0.41 0.82 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.54 6.32 -51.93 -0.33 0.21 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.54 6.67 -51.93 -0.35 0.19 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.89 6.29 -51.93 -0.33 0.56 16 39 H 0.03 0.37 4.82 -51.93 -0.25 0.12 16 40 H 0.34 2.66 9.08 -39.29 -0.36 2.30 16 41 H 0.34 2.76 7.24 -39.29 -0.28 2.48 16 42 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 LS Contribution 340.89 15.07 5.14 5.14 Total: -1.00 -30.48 340.89 -9.25 -39.74 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -7.91 Total: 5.46 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: -1.70 Total: -27.73 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.65 Total: -34.73 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -0.34 Total: -8.43 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.08 Total: 20.56 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.48 -9.25 -39.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089535428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.943 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds