Wall clock time and date at job start Mon Mar 30 2020 06:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00233 * 2 1 4 4 H 1.48507 * 109.47097 * 89.99876 * 3 2 1 5 5 H 1.48495 * 109.47265 * 210.00386 * 3 2 1 6 6 H 1.48502 * 109.47116 * 330.00491 * 3 2 1 7 7 C 1.37876 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00368 * 187.11112 * 7 2 1 9 9 C 1.50703 * 119.99546 * 7.11099 * 7 2 1 10 10 C 1.53001 * 115.55078 * 275.21284 * 9 7 2 11 11 O 1.42906 * 109.47214 * 301.49638 * 10 9 7 12 12 C 1.42896 * 113.99888 * 184.88833 * 11 10 9 13 13 C 1.53007 * 109.46766 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.46945 * 55.00154 * 13 12 11 15 15 C 1.52998 * 109.47164 * 295.00045 * 13 12 11 16 16 C 1.53001 * 109.47238 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47102 * 59.99693 * 16 15 13 18 18 C 1.52998 * 109.47325 * 300.00254 * 17 16 15 19 19 C 1.52999 * 109.46877 * 174.99921 * 13 12 11 20 20 H 1.09002 * 109.47651 * 300.00109 * 19 13 12 21 21 C 1.53004 * 109.47269 * 59.99887 * 19 13 12 22 22 N 1.46897 * 109.47241 * 184.99692 * 21 19 13 23 23 C 1.53004 * 117.49618 * 129.54817 * 9 7 2 24 24 C 1.52992 * 117.50030 * 60.88606 * 9 7 2 25 25 H 0.96993 * 120.00035 * 175.38815 * 1 2 3 26 26 H 1.08997 * 109.46938 * 61.49700 * 10 9 7 27 27 H 1.08995 * 109.46751 * 181.49995 * 10 9 7 28 28 H 1.08999 * 109.47254 * 300.00004 * 12 11 10 29 29 H 1.08999 * 109.47228 * 60.00512 * 12 11 10 30 30 H 1.09010 * 109.47105 * 299.99965 * 15 13 12 31 31 H 1.08999 * 109.47309 * 59.99708 * 15 13 12 32 32 H 1.08992 * 109.46977 * 179.97438 * 16 15 13 33 33 H 1.09000 * 109.46646 * 299.99972 * 16 15 13 34 34 H 1.08996 * 109.47184 * 59.99844 * 17 16 15 35 35 H 1.09001 * 109.47070 * 180.02562 * 17 16 15 36 36 H 1.09003 * 109.47238 * 179.97438 * 18 17 16 37 37 H 1.09000 * 109.47279 * 300.00245 * 18 17 16 38 38 H 1.08996 * 109.47157 * 304.99908 * 21 19 13 39 39 H 1.09004 * 109.47008 * 64.99664 * 21 19 13 40 40 H 1.00896 * 111.00147 * 179.97438 * 22 21 19 41 41 H 1.00900 * 111.00290 * 303.95719 * 22 21 19 42 42 H 1.08999 * 117.49946 * 359.97438 * 23 9 7 43 43 H 1.08997 * 117.50180 * 145.02236 * 23 9 7 44 44 H 1.09004 * 117.50078 * 214.97697 * 24 9 7 45 45 H 1.08998 * 117.50038 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4467 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0783 -1.1977 0.1152 9 6 1.2597 -2.4940 -0.1627 10 6 0.6779 -3.0860 1.1226 11 8 1.7302 -3.3084 2.0636 12 6 1.3096 -3.9635 3.2618 13 6 2.5113 -4.1480 4.1909 14 1 2.9859 -3.1827 4.3670 15 6 3.5173 -5.0999 3.5407 16 6 4.7186 -5.2849 4.4700 17 6 4.2474 -5.8725 5.8017 18 6 3.2415 -4.9206 6.4519 19 6 2.0406 -4.7354 5.5229 20 1 1.3239 -4.0573 5.9861 21 6 1.3742 -6.0904 5.2757 22 7 0.8166 -6.5990 6.5360 23 6 1.7682 -3.4719 -1.2239 24 6 0.4680 -2.6980 -1.4559 25 1 -0.4850 -0.8373 -0.0675 26 1 -0.0477 -2.3918 1.5464 27 1 0.1866 -4.0324 0.8968 28 1 0.5542 -3.3572 3.7615 29 1 0.8883 -4.9379 3.0145 30 1 3.0426 -6.0653 3.3646 31 1 3.8525 -4.6815 2.5917 32 1 5.4349 -5.9634 4.0070 33 1 5.1933 -4.3197 4.6465 34 1 3.7726 -6.8376 5.6253 35 1 5.1032 -6.0039 6.4640 36 1 2.9055 -5.3395 7.4005 37 1 3.7162 -3.9554 6.6284 38 1 0.5738 -5.9737 4.5451 39 1 2.1138 -6.7949 4.8951 40 1 0.3703 -7.4934 6.3990 41 1 1.5277 -6.6548 7.2496 42 1 2.6412 -3.1749 -1.8049 43 1 1.6878 -4.5370 -1.0065 44 1 -0.4672 -3.2543 -1.3911 45 1 0.4855 -1.8919 -2.1892 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089535428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:55 Heat of formation + Delta-G solvation = -72.299951 kcal Electronic energy + Delta-G solvation = -21433.006888 eV Core-core repulsion = 18449.001142 eV Total energy + Delta-G solvation = -2984.005746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.77471 -39.28512 -37.44582 -34.97592 -33.95339 -32.88241 -31.13307 -28.31654 -26.90920 -26.13415 -25.59200 -23.11289 -23.00508 -22.23983 -21.38335 -19.37221 -18.67101 -17.57572 -16.92852 -16.78894 -16.67277 -16.09054 -15.65728 -15.45574 -15.31601 -14.86914 -14.58004 -14.36657 -14.10156 -13.87191 -13.80058 -13.26202 -12.93818 -12.73306 -12.67550 -12.66849 -12.28061 -12.25134 -11.99351 -11.94628 -11.82517 -11.45306 -11.21981 -10.98267 -10.90969 -10.62386 -10.42802 -10.36099 -10.21540 -9.52105 -8.53889 -6.24195 1.52112 1.60494 1.78470 2.57265 2.71205 3.23256 3.35658 3.54116 3.73341 3.77861 3.90179 4.11853 4.14676 4.15913 4.29429 4.33824 4.34977 4.38401 4.42376 4.47819 4.57912 4.60907 4.65344 4.67204 4.76237 4.79530 4.80592 4.87821 5.00896 5.05475 5.11096 5.18273 5.25303 5.29276 5.37327 5.40205 5.42855 5.50972 5.55816 6.16516 6.25158 6.25817 6.48440 6.63566 6.75156 7.54261 8.87013 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022013 B = 0.004654 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.668996 B = 6014.540142 C = 6323.518910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.021 4.021 3 Si 1.110 2.890 4 H -0.280 1.280 5 H -0.274 1.274 6 H -0.281 1.281 7 C -0.567 4.567 8 H 0.034 0.966 9 C -0.017 4.017 10 C 0.118 3.882 11 O -0.386 6.386 12 C 0.059 3.941 13 C -0.071 4.071 14 H 0.059 0.941 15 C -0.107 4.107 16 C -0.117 4.117 17 C -0.115 4.115 18 C -0.111 4.111 19 C -0.073 4.073 20 H 0.065 0.935 21 C 0.064 3.936 22 N -0.856 5.856 23 C -0.170 4.170 24 C -0.170 4.170 25 H 0.264 0.736 26 H 0.015 0.985 27 H 0.039 0.961 28 H 0.030 0.970 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.044 0.956 40 H 0.349 0.651 41 H 0.347 0.653 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.606 -14.790 12.322 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.220 4.220 3 Si 0.933 3.067 4 H -0.206 1.206 5 H -0.200 1.200 6 H -0.206 1.206 7 C -0.605 4.605 8 H 0.053 0.947 9 C -0.018 4.018 10 C 0.041 3.959 11 O -0.306 6.306 12 C -0.017 4.017 13 C -0.091 4.091 14 H 0.077 0.923 15 C -0.144 4.144 16 C -0.155 4.155 17 C -0.152 4.152 18 C -0.149 4.149 19 C -0.092 4.092 20 H 0.083 0.917 21 C -0.066 4.066 22 N -0.388 5.388 23 C -0.207 4.207 24 C -0.207 4.207 25 H 0.074 0.926 26 H 0.033 0.967 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.096 0.904 43 H 0.112 0.888 44 H 0.106 0.894 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.141 -12.455 12.329 18.263 hybrid contribution 0.213 -2.124 -0.493 2.191 sum 5.354 -14.578 11.835 19.526 Atomic orbital electron populations 1.70820 1.07467 1.30852 1.47936 1.27016 0.96703 1.05499 0.92824 0.83015 0.74305 0.71953 0.77385 1.20566 1.19961 1.20607 1.21426 0.93736 0.91374 1.53933 0.94746 1.19188 1.00305 0.95773 0.86514 1.21878 0.88527 0.95718 0.89750 1.87948 1.34723 1.79539 1.28343 1.22719 0.97281 0.95604 0.86131 1.21050 0.94693 0.99321 0.93986 0.92298 1.21475 0.96074 0.98692 0.98202 1.21527 0.96881 1.01086 0.95977 1.21564 0.98992 0.98642 0.95987 1.21539 0.94905 1.00270 0.98158 1.21014 0.97506 0.96738 0.93900 0.91667 1.21892 0.97447 0.95283 0.91998 1.58686 1.36661 1.34400 1.09077 1.22866 0.96813 0.96482 1.04533 1.22697 0.94730 1.02111 1.01173 0.92592 0.96705 0.94299 0.95135 0.92798 0.91465 0.93805 0.91193 0.92732 0.91383 0.90554 0.90060 0.92210 0.92410 0.93803 0.83790 0.83879 0.90437 0.88782 0.89379 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.02 13.57 21.45 0.29 -56.73 16 2 C -0.02 -1.25 5.39 84.65 0.46 -0.79 16 3 Si 1.11 52.14 29.91 68.60 2.05 54.19 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.57 -33.11 8.64 25.60 0.22 -32.89 16 8 H 0.03 2.08 7.82 -2.91 -0.02 2.05 16 9 C -0.02 -0.89 1.20 -52.93 -0.06 -0.96 16 10 C 0.12 5.60 5.72 71.98 0.41 6.01 16 11 O -0.39 -17.60 9.69 -148.98 -1.44 -19.04 16 12 C 0.06 2.08 4.82 71.98 0.35 2.42 16 13 C -0.07 -2.08 2.20 -10.79 -0.02 -2.10 16 14 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 15 C -0.11 -2.85 4.83 30.59 0.15 -2.70 16 16 C -0.12 -2.45 5.92 30.59 0.18 -2.27 16 17 C -0.11 -1.85 5.65 30.59 0.17 -1.68 16 18 C -0.11 -1.98 5.22 30.58 0.16 -1.82 16 19 C -0.07 -1.64 2.40 -10.81 -0.03 -1.67 16 20 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 21 C 0.06 1.28 5.32 86.31 0.46 1.74 16 22 N -0.86 -14.05 9.62 -186.72 -1.80 -15.85 16 23 C -0.17 -7.50 9.94 30.62 0.30 -7.19 16 24 C -0.17 -7.91 8.75 30.62 0.27 -7.64 16 25 H 0.26 16.03 6.15 -92.71 -0.57 15.46 16 26 H 0.01 0.77 7.76 -2.39 -0.02 0.75 16 27 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 28 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.69 6.60 -2.39 -0.02 1.68 16 30 H 0.07 1.63 6.55 -2.38 -0.02 1.61 16 31 H 0.04 1.43 7.82 -2.39 -0.02 1.41 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.00 6.32 -2.39 -0.02 0.98 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.16 6.67 -2.39 -0.02 1.15 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.32 6.29 -2.39 -0.02 1.31 16 39 H 0.04 0.80 4.82 -2.39 -0.01 0.79 16 40 H 0.35 4.56 9.08 -89.70 -0.81 3.75 16 41 H 0.35 4.58 7.24 -89.69 -0.65 3.93 16 42 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 43 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 44 H 0.09 3.66 8.14 -2.39 -0.02 3.64 16 45 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -66.55 340.89 1.82 -64.72 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: -0.29 Total: 24.23 kcal Atomic # 6 Polarization: -54.54 SS G_CDS: 3.02 Total: -51.52 kcal Atomic # 7 Polarization: -71.07 SS G_CDS: -1.51 Total: -72.58 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -1.44 Total: -19.04 kcal Atomic # 14 Polarization: 52.14 SS G_CDS: 2.05 Total: 54.19 kcal Total: -66.55 1.82 -64.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089535428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.576 kcal (2) G-P(sol) polarization free energy of solvation -66.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds