Wall clock time and date at job start Mon Mar 30 2020 08:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.47090 * 2 1 4 4 C 1.50700 * 110.01551 * 81.53009 * 3 2 1 5 5 O 1.21283 * 119.99841 * 98.12815 * 4 3 2 6 6 N 1.34772 * 120.00240 * 278.12287 * 4 3 2 7 7 C 1.46501 * 119.99799 * 6.41829 * 6 4 3 8 8 C 1.50706 * 109.47194 * 121.37643 * 7 6 4 9 9 H 1.07995 * 119.99553 * 2.55791 * 8 7 6 10 10 C 1.37869 * 120.00322 * 182.55455 * 8 7 6 11 11 N 1.31511 * 120.00219 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 119.99917 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47246 * 90.00249 * 12 10 8 14 14 H 1.48503 * 109.47226 * 210.00289 * 12 10 8 15 15 H 1.48508 * 109.47159 * 329.99846 * 12 10 8 16 16 C 1.46502 * 120.00126 * 186.42251 * 6 4 3 17 17 C 1.53004 * 109.46691 * 303.01719 * 16 6 4 18 18 C 1.52989 * 109.47121 * 63.01815 * 16 6 4 19 19 C 1.54261 * 110.02995 * 320.09101 * 3 2 1 20 20 C 1.54891 * 104.19603 * 217.10585 * 19 3 2 21 21 C 1.54893 * 102.74631 * 37.94171 * 20 19 3 22 22 C 1.53872 * 110.03104 * 202.92142 * 3 2 1 23 23 H 1.09000 * 109.47003 * 287.87318 * 1 2 3 24 24 H 1.08992 * 109.47360 * 167.87137 * 1 2 3 25 25 H 1.08999 * 109.46951 * 47.86844 * 1 2 3 26 26 H 1.08999 * 109.47367 * 119.99533 * 2 1 3 27 27 H 1.08999 * 109.47219 * 240.00073 * 2 1 3 28 28 H 1.09004 * 109.47282 * 241.37396 * 7 6 4 29 29 H 1.09000 * 109.47562 * 1.38006 * 7 6 4 30 30 H 0.97007 * 120.00158 * 180.02562 * 11 10 8 31 31 H 1.09002 * 109.46861 * 183.01947 * 16 6 4 32 32 H 1.08992 * 109.47383 * 66.28240 * 17 16 6 33 33 H 1.08999 * 109.46810 * 186.28304 * 17 16 6 34 34 H 1.09004 * 109.47230 * 306.28126 * 17 16 6 35 35 H 1.09000 * 109.47646 * 64.60510 * 18 16 6 36 36 H 1.08999 * 109.47017 * 184.60298 * 18 16 6 37 37 H 1.08999 * 109.47263 * 304.60050 * 18 16 6 38 38 H 1.09003 * 110.48645 * 335.77985 * 19 3 2 39 39 H 1.09002 * 110.49278 * 98.42651 * 19 3 2 40 40 H 1.08997 * 110.75648 * 279.63231 * 20 19 3 41 41 H 1.09001 * 110.76321 * 156.25462 * 20 19 3 42 42 H 1.09001 * 110.48840 * 203.37930 * 21 20 19 43 43 H 1.09002 * 110.48826 * 80.74191 * 21 20 19 44 44 H 1.08991 * 110.03238 * 238.56862 * 22 3 2 45 45 H 1.09000 * 110.03237 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0153 1.9984 1.4005 5 8 3.0286 2.0083 2.0670 6 7 0.8673 2.4846 1.9125 7 6 -0.3848 2.3458 1.1647 8 6 -1.3843 1.5831 1.9956 9 1 -1.1282 1.2723 2.9977 10 6 -2.6256 1.2820 1.4766 11 7 -3.4979 0.6169 2.2019 12 14 -3.0683 1.8190 -0.2569 13 1 -2.6832 0.7548 -1.2183 14 1 -4.5315 2.0577 -0.3427 15 1 -2.3423 3.0716 -0.5878 16 6 0.8716 3.1519 3.2167 17 6 1.4406 2.2028 4.2733 18 6 1.7377 4.4108 3.1426 19 6 1.1680 2.3113 -0.9298 20 6 2.1729 3.2874 -1.5905 21 6 3.4187 2.3949 -1.8155 22 6 3.4710 1.4957 -0.5630 23 1 -0.3633 0.3154 0.9781 24 1 -0.3634 -1.0046 -0.2159 25 1 -0.3633 0.6894 -0.7621 26 1 1.8934 -0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 -0.7824 3.3344 0.9351 29 1 -0.1961 1.8056 0.2370 30 1 -4.3712 0.4048 1.8366 31 1 -0.1478 3.4275 3.4871 32 1 2.4937 2.0154 4.0640 33 1 1.3412 2.6556 5.2597 34 1 0.8922 1.2610 4.2488 35 1 1.2872 5.1216 2.4497 36 1 1.8075 4.8626 4.1321 37 1 2.7354 4.1454 2.7932 38 1 0.6835 1.6932 -1.6857 39 1 0.4253 2.8616 -0.3522 40 1 2.4062 4.1142 -0.9197 41 1 1.7856 3.6565 -2.5402 42 1 4.3186 3.0061 -1.8841 43 1 3.2976 1.7903 -2.7144 44 1 4.1475 1.9243 0.1763 45 1 3.8024 0.4937 -0.8358 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094901744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:17 Heat of formation + Delta-G solvation = 1.529670 kcal Electronic energy + Delta-G solvation = -23327.562177 eV Core-core repulsion = 20346.757923 eV Total energy + Delta-G solvation = -2980.804254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.76626 -37.34224 -35.79283 -33.72128 -32.42133 -31.27821 -28.91230 -28.05550 -26.78066 -26.56256 -23.17605 -22.67021 -21.76604 -20.36190 -19.74432 -17.57869 -16.96805 -15.95111 -15.48392 -15.30732 -14.76956 -14.41536 -13.92726 -13.88789 -13.28107 -12.98957 -12.82258 -12.61686 -12.52818 -12.41314 -12.06733 -11.82052 -11.52786 -11.20046 -11.03566 -10.93744 -10.86429 -10.74330 -10.66444 -10.65911 -10.43903 -10.37459 -10.05333 -9.99953 -9.99266 -9.69596 -8.96349 -8.76536 -8.47908 -7.66506 -6.28226 -4.25246 3.12885 3.20519 3.23471 3.37226 3.86238 4.21274 4.76750 4.87267 4.98788 5.03048 5.34076 5.50588 5.60616 5.64229 5.70727 5.74950 5.81796 5.89524 5.92514 6.02600 6.07504 6.09347 6.16525 6.17680 6.23807 6.28476 6.32843 6.41619 6.46492 6.49735 6.54619 6.57767 6.64043 6.66995 6.75902 6.83592 6.88660 6.98764 7.34259 7.49508 7.62422 8.11502 8.51282 8.78989 8.99084 9.31369 10.83496 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.010205 C = 0.007717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.870307 B = 2742.985038 C = 3627.292470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.099 4.099 3 C -0.076 4.076 4 C 0.529 3.471 5 O -0.563 6.563 6 N -0.581 5.581 7 C 0.149 3.851 8 C -0.533 4.533 9 H 0.083 0.917 10 C 0.083 3.917 11 N -0.884 5.884 12 Si 0.857 3.143 13 H -0.266 1.266 14 H -0.284 1.284 15 H -0.261 1.261 16 C 0.148 3.852 17 C -0.164 4.164 18 C -0.163 4.163 19 C -0.159 4.159 20 C -0.126 4.126 21 C -0.122 4.122 22 C -0.109 4.109 23 H 0.139 0.861 24 H 0.041 0.959 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.017 0.983 29 H 0.100 0.900 30 H 0.268 0.732 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.081 0.919 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.686 3.789 -6.122 11.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.137 4.137 3 C -0.080 4.080 4 C 0.317 3.683 5 O -0.444 6.444 6 N -0.310 5.310 7 C 0.029 3.971 8 C -0.571 4.571 9 H 0.101 0.899 10 C -0.122 4.122 11 N -0.521 5.521 12 Si 0.683 3.317 13 H -0.191 1.191 14 H -0.209 1.209 15 H -0.185 1.185 16 C 0.044 3.956 17 C -0.222 4.222 18 C -0.221 4.221 19 C -0.195 4.195 20 C -0.164 4.164 21 C -0.160 4.160 22 C -0.147 4.147 23 H 0.156 0.844 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.035 0.965 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.129 0.871 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.981 3.724 -5.755 11.298 hybrid contribution -0.630 0.129 -0.940 1.139 sum 8.351 3.853 -6.695 11.375 Atomic orbital electron populations 1.23265 0.94145 1.00813 1.08845 1.21535 0.97654 0.93074 1.01416 1.21309 0.96692 0.96902 0.93050 1.20282 0.82915 0.77015 0.88072 1.90507 1.34224 1.58252 1.61407 1.47942 1.08296 1.55511 1.19298 1.21493 0.82096 0.97531 0.95952 1.21211 0.97461 1.35548 1.02855 0.89940 1.24837 0.95894 0.94178 0.97296 1.69877 1.06825 1.38380 1.37025 0.87188 0.78506 0.80238 0.85790 1.19130 1.20939 1.18544 1.20830 1.00022 0.91460 0.83246 1.22202 1.03184 0.99769 0.97039 1.22159 1.01384 0.97393 1.01184 1.23596 0.98807 0.98042 0.99082 1.22539 0.95751 0.97960 1.00130 1.22359 0.97951 0.97808 0.97874 1.22204 0.95266 1.00025 0.97189 0.84352 0.93948 0.92772 0.92022 0.92352 0.96517 0.88364 0.92233 0.89051 0.90589 0.93318 0.92424 0.93306 0.92475 0.91559 0.90523 0.87148 0.91791 0.91829 0.92101 0.91967 0.90061 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.19 7.25 37.16 0.27 -3.92 16 2 C -0.10 -1.72 5.09 -26.73 -0.14 -1.85 16 3 C -0.08 -1.32 0.61 -154.54 -0.09 -1.41 16 4 C 0.53 10.49 5.73 -10.99 -0.06 10.43 16 5 O -0.56 -11.97 11.86 5.56 0.07 -11.90 16 6 N -0.58 -11.80 2.53 -167.98 -0.42 -12.22 16 7 C 0.15 3.21 1.67 -5.19 -0.01 3.20 16 8 C -0.53 -13.38 6.73 -34.44 -0.23 -13.62 16 9 H 0.08 2.31 7.71 -52.49 -0.40 1.91 16 10 C 0.08 2.14 5.21 -17.82 -0.09 2.05 16 11 N -0.88 -24.79 13.96 55.43 0.77 -24.02 16 12 Si 0.86 19.16 25.63 -169.99 -4.36 14.80 16 13 H -0.27 -5.74 7.07 56.52 0.40 -5.34 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.26 -5.51 6.62 56.52 0.37 -5.14 16 16 C 0.15 2.83 2.73 -67.93 -0.19 2.64 16 17 C -0.16 -3.07 8.92 37.16 0.33 -2.74 16 18 C -0.16 -2.71 9.22 37.15 0.34 -2.37 16 19 C -0.16 -2.60 4.04 -25.07 -0.10 -2.70 16 20 C -0.13 -1.76 6.91 -24.74 -0.17 -1.93 16 21 C -0.12 -1.58 6.83 -25.07 -0.17 -1.75 16 22 C -0.11 -1.65 5.95 -25.61 -0.15 -1.80 16 23 H 0.14 3.13 3.22 -51.93 -0.17 2.96 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 1.03 3.58 -51.93 -0.19 0.84 16 26 H 0.06 1.12 7.97 -51.93 -0.41 0.71 16 27 H 0.06 0.88 7.70 -51.93 -0.40 0.48 16 28 H 0.02 0.37 7.08 -51.93 -0.37 0.01 16 29 H 0.10 2.01 0.43 -51.93 -0.02 1.99 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.09 1.83 7.52 -51.93 -0.39 1.44 16 32 H 0.08 1.49 6.02 -51.93 -0.31 1.18 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.18 6.51 -51.93 -0.34 0.85 16 38 H 0.08 1.20 6.42 -51.93 -0.33 0.87 16 39 H 0.11 2.01 3.77 -52.59 -0.20 1.81 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.08 1.35 6.67 -51.93 -0.35 1.00 16 45 H 0.06 0.90 7.45 -51.93 -0.39 0.51 16 LS Contribution 315.20 15.07 4.75 4.75 Total: -1.00 -27.03 315.20 -6.89 -33.92 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -7.23 Total: 10.44 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -0.46 Total: -15.77 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.35 Total: -36.24 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.07 Total: -11.90 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.36 Total: 14.80 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.03 -6.89 -33.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094901744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.449 kcal (2) G-P(sol) polarization free energy of solvation -27.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds