Wall clock time and date at job start Mon Mar 30 2020 08:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.47090 * 2 1 4 4 C 1.50700 * 110.01551 * 81.53009 * 3 2 1 5 5 O 1.21283 * 119.99841 * 98.12815 * 4 3 2 6 6 N 1.34772 * 120.00240 * 278.12287 * 4 3 2 7 7 C 1.46501 * 119.99799 * 6.41829 * 6 4 3 8 8 C 1.50706 * 109.47194 * 121.37643 * 7 6 4 9 9 H 1.07995 * 119.99553 * 2.55791 * 8 7 6 10 10 C 1.37869 * 120.00322 * 182.55455 * 8 7 6 11 11 N 1.31511 * 120.00219 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 119.99917 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47246 * 90.00249 * 12 10 8 14 14 H 1.48503 * 109.47226 * 210.00289 * 12 10 8 15 15 H 1.48508 * 109.47159 * 329.99846 * 12 10 8 16 16 C 1.46502 * 120.00126 * 186.42251 * 6 4 3 17 17 C 1.53004 * 109.46691 * 303.01719 * 16 6 4 18 18 C 1.52989 * 109.47121 * 63.01815 * 16 6 4 19 19 C 1.54261 * 110.02995 * 320.09101 * 3 2 1 20 20 C 1.54891 * 104.19603 * 217.10585 * 19 3 2 21 21 C 1.54893 * 102.74631 * 37.94171 * 20 19 3 22 22 C 1.53872 * 110.03104 * 202.92142 * 3 2 1 23 23 H 1.09000 * 109.47003 * 287.87318 * 1 2 3 24 24 H 1.08992 * 109.47360 * 167.87137 * 1 2 3 25 25 H 1.08999 * 109.46951 * 47.86844 * 1 2 3 26 26 H 1.08999 * 109.47367 * 119.99533 * 2 1 3 27 27 H 1.08999 * 109.47219 * 240.00073 * 2 1 3 28 28 H 1.09004 * 109.47282 * 241.37396 * 7 6 4 29 29 H 1.09000 * 109.47562 * 1.38006 * 7 6 4 30 30 H 0.97007 * 120.00158 * 180.02562 * 11 10 8 31 31 H 1.09002 * 109.46861 * 183.01947 * 16 6 4 32 32 H 1.08992 * 109.47383 * 66.28240 * 17 16 6 33 33 H 1.08999 * 109.46810 * 186.28304 * 17 16 6 34 34 H 1.09004 * 109.47230 * 306.28126 * 17 16 6 35 35 H 1.09000 * 109.47646 * 64.60510 * 18 16 6 36 36 H 1.08999 * 109.47017 * 184.60298 * 18 16 6 37 37 H 1.08999 * 109.47263 * 304.60050 * 18 16 6 38 38 H 1.09003 * 110.48645 * 335.77985 * 19 3 2 39 39 H 1.09002 * 110.49278 * 98.42651 * 19 3 2 40 40 H 1.08997 * 110.75648 * 279.63231 * 20 19 3 41 41 H 1.09001 * 110.76321 * 156.25462 * 20 19 3 42 42 H 1.09001 * 110.48840 * 203.37930 * 21 20 19 43 43 H 1.09002 * 110.48826 * 80.74191 * 21 20 19 44 44 H 1.08991 * 110.03238 * 238.56862 * 22 3 2 45 45 H 1.09000 * 110.03237 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0153 1.9984 1.4005 5 8 3.0286 2.0083 2.0670 6 7 0.8673 2.4846 1.9125 7 6 -0.3848 2.3458 1.1647 8 6 -1.3843 1.5831 1.9956 9 1 -1.1282 1.2723 2.9977 10 6 -2.6256 1.2820 1.4766 11 7 -3.4979 0.6169 2.2019 12 14 -3.0683 1.8190 -0.2569 13 1 -2.6832 0.7548 -1.2183 14 1 -4.5315 2.0577 -0.3427 15 1 -2.3423 3.0716 -0.5878 16 6 0.8716 3.1519 3.2167 17 6 1.4406 2.2028 4.2733 18 6 1.7377 4.4108 3.1426 19 6 1.1680 2.3113 -0.9298 20 6 2.1729 3.2874 -1.5905 21 6 3.4187 2.3949 -1.8155 22 6 3.4710 1.4957 -0.5630 23 1 -0.3633 0.3154 0.9781 24 1 -0.3634 -1.0046 -0.2159 25 1 -0.3633 0.6894 -0.7621 26 1 1.8934 -0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 -0.7824 3.3344 0.9351 29 1 -0.1961 1.8056 0.2370 30 1 -4.3712 0.4048 1.8366 31 1 -0.1478 3.4275 3.4871 32 1 2.4937 2.0154 4.0640 33 1 1.3412 2.6556 5.2597 34 1 0.8922 1.2610 4.2488 35 1 1.2872 5.1216 2.4497 36 1 1.8075 4.8626 4.1321 37 1 2.7354 4.1454 2.7932 38 1 0.6835 1.6932 -1.6857 39 1 0.4253 2.8616 -0.3522 40 1 2.4062 4.1142 -0.9197 41 1 1.7856 3.6565 -2.5402 42 1 4.3186 3.0061 -1.8841 43 1 3.2976 1.7903 -2.7144 44 1 4.1475 1.9243 0.1763 45 1 3.8024 0.4937 -0.8358 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094901744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:17 Heat of formation + Delta-G solvation = -13.214331 kcal Electronic energy + Delta-G solvation = -23328.201525 eV Core-core repulsion = 20346.757923 eV Total energy + Delta-G solvation = -2981.443602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.24129 -38.73750 -37.44285 -35.26475 -34.15329 -32.82308 -30.40267 -29.51336 -28.21549 -28.04567 -24.84048 -24.17617 -23.29695 -21.63444 -21.08698 -19.21390 -18.77136 -17.52955 -16.99978 -16.69084 -16.16628 -16.12284 -15.44040 -15.27544 -14.71982 -14.61866 -14.46896 -14.14704 -14.03113 -13.86616 -13.46362 -13.34423 -12.91882 -12.73186 -12.64716 -12.50181 -12.30073 -12.26210 -12.02096 -11.94209 -11.89682 -11.78691 -11.59441 -11.47767 -11.33193 -11.24861 -10.71865 -10.54932 -10.09086 -9.32830 -8.29137 -6.29546 1.36329 1.39474 1.46825 1.81107 2.32344 2.34084 3.03944 3.53855 3.58266 3.73403 3.99111 4.19908 4.25632 4.29981 4.34259 4.42156 4.46463 4.57756 4.63877 4.72152 4.73461 4.75855 4.76288 4.87047 4.91706 4.93624 4.98381 5.00497 5.08015 5.12237 5.17996 5.21906 5.26343 5.30343 5.35034 5.38005 5.42223 5.51021 5.53953 5.84751 5.94889 6.19194 6.71186 6.83096 7.26743 7.43919 8.86458 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.010205 C = 0.007717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.870307 B = 2742.985038 C = 3627.292470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.095 4.095 3 C -0.080 4.080 4 C 0.522 3.478 5 O -0.581 6.581 6 N -0.588 5.588 7 C 0.160 3.840 8 C -0.524 4.524 9 H 0.037 0.963 10 C 0.032 3.968 11 N -0.937 5.937 12 Si 0.909 3.091 13 H -0.247 1.247 14 H -0.289 1.289 15 H -0.237 1.237 16 C 0.138 3.862 17 C -0.154 4.154 18 C -0.150 4.150 19 C -0.163 4.163 20 C -0.122 4.122 21 C -0.114 4.114 22 C -0.107 4.107 23 H 0.104 0.896 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.044 0.956 27 H 0.091 0.909 28 H 0.017 0.983 29 H 0.120 0.880 30 H 0.268 0.732 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.027 0.973 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.008 4.797 -9.081 14.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.132 4.132 3 C -0.083 4.083 4 C 0.312 3.688 5 O -0.463 6.463 6 N -0.317 5.317 7 C 0.039 3.961 8 C -0.562 4.562 9 H 0.055 0.945 10 C -0.168 4.168 11 N -0.576 5.576 12 Si 0.731 3.269 13 H -0.171 1.171 14 H -0.215 1.215 15 H -0.160 1.160 16 C 0.034 3.966 17 C -0.212 4.212 18 C -0.208 4.208 19 C -0.199 4.199 20 C -0.160 4.160 21 C -0.152 4.152 22 C -0.145 4.145 23 H 0.122 0.878 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.110 0.890 28 H 0.035 0.965 29 H 0.137 0.863 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.080 0.920 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.333 4.744 -8.713 14.325 hybrid contribution -1.001 -0.229 0.128 1.035 sum 9.332 4.516 -8.585 13.460 Atomic orbital electron populations 1.23134 0.95837 1.01168 1.06877 1.21517 0.96027 0.93501 1.02195 1.21425 0.98701 0.96625 0.91513 1.20854 0.82287 0.76476 0.89231 1.90492 1.34688 1.58837 1.62284 1.48018 1.08223 1.55867 1.19620 1.21423 0.81637 0.96945 0.96074 1.21293 0.98459 1.35190 1.01281 0.94523 1.25580 0.95629 0.94153 1.01404 1.70028 1.07477 1.40739 1.39353 0.86337 0.78098 0.81365 0.81104 1.17132 1.21494 1.15994 1.20970 0.99805 0.92688 0.83100 1.22096 1.01907 0.98615 0.98538 1.22035 0.99856 0.96064 1.02825 1.23550 0.98929 0.98447 0.99005 1.22528 0.95472 0.97216 1.00757 1.22351 0.98047 0.97488 0.97269 1.22200 0.93088 1.01427 0.97780 0.87764 0.93534 0.91836 0.93704 0.89044 0.96497 0.86311 0.92317 0.90578 0.91390 0.90819 0.95360 0.92523 0.90095 0.92728 0.89160 0.89254 0.92731 0.89451 0.90695 0.89837 0.91968 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -8.07 7.25 71.98 0.52 -7.54 16 2 C -0.09 -3.11 5.09 30.60 0.16 -2.95 16 3 C -0.08 -2.59 0.61 -52.20 -0.03 -2.62 16 4 C 0.52 20.57 5.73 87.66 0.50 21.07 16 5 O -0.58 -24.77 11.86 -3.04 -0.04 -24.80 16 6 N -0.59 -24.12 2.53 -803.75 -2.03 -26.15 16 7 C 0.16 6.86 1.67 85.63 0.14 7.00 16 8 C -0.52 -27.25 6.73 25.60 0.17 -27.08 16 9 H 0.04 2.19 7.71 -2.91 -0.02 2.17 16 10 C 0.03 1.69 5.21 84.65 0.44 2.14 16 11 N -0.94 -54.50 13.96 21.44 0.30 -54.20 16 12 Si 0.91 38.61 25.63 68.60 1.76 40.37 16 13 H -0.25 -9.73 7.07 99.48 0.70 -9.02 16 14 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 15 H -0.24 -9.09 6.62 99.48 0.66 -8.43 16 16 C 0.14 5.36 2.73 44.99 0.12 5.49 16 17 C -0.15 -5.94 8.92 71.98 0.64 -5.30 16 18 C -0.15 -4.85 9.22 71.98 0.66 -4.18 16 19 C -0.16 -4.81 4.04 31.67 0.13 -4.69 16 20 C -0.12 -2.92 6.91 31.89 0.22 -2.70 16 21 C -0.11 -2.45 6.83 31.67 0.22 -2.23 16 22 C -0.11 -2.94 5.95 31.32 0.19 -2.75 16 23 H 0.10 4.76 3.22 -2.39 -0.01 4.76 16 24 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.06 2.24 3.58 -2.39 -0.01 2.23 16 26 H 0.04 1.61 7.97 -2.39 -0.02 1.59 16 27 H 0.09 2.42 7.70 -2.39 -0.02 2.40 16 28 H 0.02 0.74 7.08 -2.39 -0.02 0.73 16 29 H 0.12 4.69 0.43 -2.39 0.00 4.69 16 30 H 0.27 14.65 8.31 -92.70 -0.77 13.88 16 31 H 0.08 3.15 7.52 -2.39 -0.02 3.14 16 32 H 0.07 2.73 6.02 -2.39 -0.01 2.72 16 33 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.03 1.21 8.05 -2.38 -0.02 1.19 16 35 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.05 1.90 6.51 -2.39 -0.02 1.89 16 38 H 0.09 2.43 6.42 -2.39 -0.02 2.42 16 39 H 0.09 3.03 3.77 -3.01 -0.01 3.02 16 40 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.06 1.96 6.67 -2.39 -0.02 1.94 16 45 H 0.08 1.93 7.45 -2.39 -0.02 1.91 16 Total: -1.00 -60.86 315.20 5.00 -55.87 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: 0.92 Total: 35.29 kcal Atomic # 6 Polarization: -30.44 SS G_CDS: 4.08 Total: -26.36 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -1.73 Total: -80.36 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.04 Total: -24.80 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 1.76 Total: 40.37 kcal Total: -60.86 5.00 -55.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094901744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.652 kcal (2) G-P(sol) polarization free energy of solvation -60.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds