Wall clock time and date at job start Mon Mar 30 2020 07:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46908 * 2 1 4 4 N 1.46501 * 109.47376 * 120.00292 * 2 1 3 5 5 C 1.46500 * 119.99810 * 305.20698 * 4 2 1 6 6 C 1.50699 * 109.47145 * 270.00292 * 5 4 2 7 7 H 1.07997 * 119.99940 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99880 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99972 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 120.00265 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47409 * 90.00292 * 10 8 6 12 12 H 1.48502 * 109.47444 * 210.00253 * 10 8 6 13 13 H 1.48507 * 109.47194 * 329.99908 * 10 8 6 14 14 C 1.34778 * 119.99874 * 125.20889 * 4 2 1 15 15 O 1.21278 * 119.99598 * 175.65161 * 14 4 2 16 16 C 1.50700 * 120.00191 * 355.92484 * 14 4 2 17 17 C 1.53002 * 109.46744 * 296.26497 * 16 14 4 18 18 C 1.52995 * 109.47221 * 299.99605 * 17 16 14 19 19 C 1.52991 * 109.47722 * 300.00476 * 18 17 16 20 20 C 1.53004 * 109.47634 * 180.02562 * 19 18 17 21 21 C 1.52995 * 109.47288 * 59.99707 * 19 18 17 22 22 C 1.52998 * 109.47199 * 176.26787 * 16 14 4 23 23 H 1.08999 * 109.47006 * 299.99602 * 1 2 3 24 24 H 1.08999 * 109.47410 * 60.00342 * 1 2 3 25 25 H 1.09002 * 109.46483 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.47123 * 240.00281 * 2 1 3 27 27 H 1.09008 * 109.47079 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47274 * 299.99803 * 3 2 1 29 29 H 1.09000 * 109.47465 * 60.00532 * 3 2 1 30 30 H 1.08995 * 109.47052 * 30.00259 * 5 4 2 31 31 H 1.08997 * 109.46709 * 150.00071 * 5 4 2 32 32 H 0.96996 * 120.00345 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.47171 * 56.26290 * 16 14 4 34 34 H 1.08999 * 109.47408 * 60.00700 * 17 16 14 35 35 H 1.09004 * 109.46692 * 180.02562 * 17 16 14 36 36 H 1.09004 * 109.47057 * 179.97438 * 18 17 16 37 37 H 1.09004 * 109.46889 * 60.00609 * 18 17 16 38 38 H 1.09004 * 109.47048 * 300.00036 * 19 18 17 39 39 H 1.09004 * 109.46313 * 299.99781 * 20 19 18 40 40 H 1.08997 * 109.46903 * 59.99352 * 20 19 18 41 41 H 1.08992 * 109.47115 * 180.02562 * 20 19 18 42 42 H 1.08992 * 109.47737 * 180.02562 * 21 19 18 43 43 H 1.09004 * 109.47239 * 59.99863 * 21 19 18 44 44 H 1.08995 * 109.47057 * 179.97438 * 22 16 14 45 45 H 1.09005 * 109.46778 * 299.99961 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5730 -0.2602 2.5237 6 6 2.5147 0.7904 3.0533 7 1 3.3606 1.1056 2.4605 8 6 2.2969 1.3484 4.2951 9 7 3.1190 2.2649 4.7576 10 14 0.8341 0.8029 5.3208 11 1 1.2311 -0.3417 6.1796 12 1 0.3811 1.9295 6.1757 13 1 -0.2729 0.3871 4.4224 14 6 2.8775 -1.7221 1.0751 15 8 3.3431 -2.2428 2.0665 16 6 3.2644 -2.2241 -0.2921 17 6 2.0276 -2.7822 -0.9992 18 6 1.4474 -3.9352 -0.1778 19 6 2.4965 -5.0399 -0.0374 20 6 1.9160 -6.1933 0.7834 21 6 3.7332 -4.4820 0.6697 22 6 4.3135 -3.3289 -0.1517 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.5679 0.1555 2.4526 31 1 1.5655 -1.1154 3.1994 32 1 2.9656 2.6578 5.6310 33 1 3.6778 -1.4027 -0.8773 34 1 1.2802 -1.9951 -1.0993 35 1 2.3075 -3.1457 -1.9879 36 1 0.5660 -4.3325 -0.6814 37 1 1.1676 -3.5720 0.8111 38 1 2.7763 -5.4031 -1.0263 39 1 1.6359 -5.8304 1.7724 40 1 1.0351 -6.5907 0.2793 41 1 2.6635 -6.9801 0.8838 42 1 4.4808 -5.2688 0.7694 43 1 3.4534 -4.1187 1.6586 44 1 4.5929 -3.6923 -1.1406 45 1 5.1946 -2.9313 0.3521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116291970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:14 Heat of formation + Delta-G solvation = -57.149611 kcal Electronic energy + Delta-G solvation = -22522.783865 eV Core-core repulsion = 19539.435087 eV Total energy + Delta-G solvation = -2983.348778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.30071 -37.43161 -35.94240 -32.98436 -32.33256 -31.00201 -30.50266 -28.17930 -26.79356 -26.28128 -22.97161 -22.64011 -21.68451 -20.73524 -19.81353 -17.82046 -16.84136 -16.32289 -15.63510 -15.02242 -14.52902 -14.20657 -14.09184 -13.69928 -13.57401 -13.39058 -13.08153 -12.61807 -12.47231 -12.26104 -11.96690 -11.83782 -11.73048 -11.62065 -11.44763 -11.37884 -11.29909 -10.93657 -10.85188 -10.77308 -10.46123 -10.35101 -10.22254 -10.02044 -9.92120 -9.78975 -9.38866 -8.62439 -8.53810 -7.60513 -6.04001 -4.00677 3.30377 3.36297 3.38517 3.44936 3.88180 4.42863 4.77723 4.82954 4.90952 5.10479 5.20900 5.27467 5.29013 5.43625 5.51574 5.54059 5.58151 5.63090 5.68444 5.74512 5.81861 5.91567 5.93458 5.98584 6.02560 6.12514 6.17738 6.19947 6.27657 6.33982 6.35560 6.43543 6.49538 6.54230 6.56664 6.83606 6.89542 7.01693 7.03130 7.47765 7.67889 8.38478 8.53908 9.00623 9.11709 9.57298 11.09416 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020132 B = 0.006724 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.482779 B = 4163.477285 C = 4585.485519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.127 3.873 3 C -0.160 4.160 4 N -0.587 5.587 5 C 0.215 3.785 6 C -0.518 4.518 7 H 0.076 0.924 8 C 0.070 3.930 9 N -0.899 5.899 10 Si 0.872 3.128 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.516 3.484 15 O -0.535 6.535 16 C -0.111 4.111 17 C -0.117 4.117 18 C -0.115 4.115 19 C -0.089 4.089 20 C -0.146 4.146 21 C -0.131 4.131 22 C -0.094 4.094 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.030 0.970 31 H 0.031 0.969 32 H 0.263 0.737 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.101 0.899 44 H 0.058 0.942 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.559 -10.405 -14.034 18.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 C -0.218 4.218 4 N -0.319 5.319 5 C 0.095 3.905 6 C -0.556 4.556 7 H 0.094 0.906 8 C -0.131 4.131 9 N -0.538 5.538 10 Si 0.700 3.300 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.192 1.192 14 C 0.303 3.697 15 O -0.412 6.412 16 C -0.133 4.133 17 C -0.155 4.155 18 C -0.153 4.153 19 C -0.107 4.107 20 C -0.203 4.203 21 C -0.168 4.168 22 C -0.131 4.131 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.119 0.881 44 H 0.077 0.923 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.298 -10.548 -13.328 17.532 hybrid contribution -0.664 0.003 0.615 0.905 sum -4.961 -10.544 -12.713 17.246 Atomic orbital electron populations 1.22190 0.95727 1.01776 1.02512 1.21200 0.94020 0.94157 0.88324 1.22177 1.01499 0.95723 1.02358 1.47986 1.44968 1.31218 1.07717 1.19595 0.95382 0.95820 0.79736 1.21351 1.11754 1.19931 1.02592 0.90586 1.24854 0.96217 0.94815 0.97242 1.69896 1.37172 1.27786 1.18978 0.86913 0.83552 0.78567 0.81007 1.20067 1.21211 1.19178 1.20252 0.78926 0.79977 0.90558 1.90567 1.53037 1.57876 1.39745 1.21355 0.97465 0.98998 0.95445 1.21750 0.96597 0.98575 0.98570 1.21592 0.97579 0.95441 1.00661 1.21107 0.95876 0.94944 0.98780 1.21813 1.00191 0.97901 1.00416 1.21907 0.95989 0.96717 1.02197 1.21258 0.97375 0.94997 0.99505 0.91430 0.92098 0.92758 0.89679 0.92728 0.93294 0.89992 0.95224 0.95058 0.92719 0.89452 0.90580 0.91483 0.92317 0.91653 0.92032 0.92581 0.93232 0.93009 0.92980 0.88130 0.92347 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 8.71 37.16 0.32 -1.95 16 2 C 0.13 2.01 2.33 -67.93 -0.16 1.85 16 3 C -0.16 -2.67 8.61 37.16 0.32 -2.35 16 4 N -0.59 -11.81 2.39 -167.47 -0.40 -12.21 16 5 C 0.22 5.19 3.76 -5.19 -0.02 5.17 16 6 C -0.52 -14.62 8.41 -34.44 -0.29 -14.91 16 7 H 0.08 2.36 7.83 -52.49 -0.41 1.95 16 8 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 9 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 10 Si 0.87 21.69 27.47 -169.99 -4.67 17.02 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 14 C 0.52 10.28 5.54 -10.99 -0.06 10.22 16 15 O -0.53 -12.78 13.16 5.56 0.07 -12.70 16 16 C -0.11 -1.65 2.16 -91.77 -0.20 -1.85 16 17 C -0.12 -1.43 5.01 -26.73 -0.13 -1.56 16 18 C -0.12 -1.48 4.98 -26.74 -0.13 -1.61 16 19 C -0.09 -1.10 2.72 -90.62 -0.25 -1.35 16 20 C -0.15 -1.69 9.20 37.16 0.34 -1.34 16 21 C -0.13 -1.91 4.91 -26.73 -0.13 -2.05 16 22 C -0.09 -1.33 5.11 -26.73 -0.14 -1.47 16 23 H 0.07 1.06 6.51 -51.93 -0.34 0.73 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.71 7.69 -51.93 -0.40 0.31 16 26 H 0.09 1.13 4.21 -51.92 -0.22 0.91 16 27 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.64 6.93 -51.93 -0.36 1.28 16 30 H 0.03 0.69 5.23 -51.93 -0.27 0.42 16 31 H 0.03 0.82 6.91 -51.93 -0.36 0.46 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.09 1.20 7.51 -51.93 -0.39 0.81 16 34 H 0.08 0.89 4.62 -51.93 -0.24 0.65 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 1.02 7.22 -51.93 -0.37 0.65 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.10 1.84 5.39 -51.93 -0.28 1.56 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 1.05 8.13 -51.93 -0.42 0.62 16 LS Contribution 330.69 15.07 4.98 4.98 Total: -1.00 -31.92 330.69 -7.74 -39.66 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.88 Total: 1.47 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -0.62 Total: -11.26 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.37 Total: -39.17 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.07 Total: -12.70 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.92 -7.74 -39.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116291970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.487 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds