Wall clock time and date at job start Mon Mar 30 2020 07:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46908 * 2 1 4 4 N 1.46501 * 109.47376 * 120.00292 * 2 1 3 5 5 C 1.46500 * 119.99810 * 305.20698 * 4 2 1 6 6 C 1.50699 * 109.47145 * 270.00292 * 5 4 2 7 7 H 1.07997 * 119.99940 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99880 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99972 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 120.00265 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47409 * 90.00292 * 10 8 6 12 12 H 1.48502 * 109.47444 * 210.00253 * 10 8 6 13 13 H 1.48507 * 109.47194 * 329.99908 * 10 8 6 14 14 C 1.34778 * 119.99874 * 125.20889 * 4 2 1 15 15 O 1.21278 * 119.99598 * 175.65161 * 14 4 2 16 16 C 1.50700 * 120.00191 * 355.92484 * 14 4 2 17 17 C 1.53002 * 109.46744 * 296.26497 * 16 14 4 18 18 C 1.52995 * 109.47221 * 299.99605 * 17 16 14 19 19 C 1.52991 * 109.47722 * 300.00476 * 18 17 16 20 20 C 1.53004 * 109.47634 * 180.02562 * 19 18 17 21 21 C 1.52995 * 109.47288 * 59.99707 * 19 18 17 22 22 C 1.52998 * 109.47199 * 176.26787 * 16 14 4 23 23 H 1.08999 * 109.47006 * 299.99602 * 1 2 3 24 24 H 1.08999 * 109.47410 * 60.00342 * 1 2 3 25 25 H 1.09002 * 109.46483 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.47123 * 240.00281 * 2 1 3 27 27 H 1.09008 * 109.47079 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47274 * 299.99803 * 3 2 1 29 29 H 1.09000 * 109.47465 * 60.00532 * 3 2 1 30 30 H 1.08995 * 109.47052 * 30.00259 * 5 4 2 31 31 H 1.08997 * 109.46709 * 150.00071 * 5 4 2 32 32 H 0.96996 * 120.00345 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.47171 * 56.26290 * 16 14 4 34 34 H 1.08999 * 109.47408 * 60.00700 * 17 16 14 35 35 H 1.09004 * 109.46692 * 180.02562 * 17 16 14 36 36 H 1.09004 * 109.47057 * 179.97438 * 18 17 16 37 37 H 1.09004 * 109.46889 * 60.00609 * 18 17 16 38 38 H 1.09004 * 109.47048 * 300.00036 * 19 18 17 39 39 H 1.09004 * 109.46313 * 299.99781 * 20 19 18 40 40 H 1.08997 * 109.46903 * 59.99352 * 20 19 18 41 41 H 1.08992 * 109.47115 * 180.02562 * 20 19 18 42 42 H 1.08992 * 109.47737 * 180.02562 * 21 19 18 43 43 H 1.09004 * 109.47239 * 59.99863 * 21 19 18 44 44 H 1.08995 * 109.47057 * 179.97438 * 22 16 14 45 45 H 1.09005 * 109.46778 * 299.99961 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5730 -0.2602 2.5237 6 6 2.5147 0.7904 3.0533 7 1 3.3606 1.1056 2.4605 8 6 2.2969 1.3484 4.2951 9 7 3.1190 2.2649 4.7576 10 14 0.8341 0.8029 5.3208 11 1 1.2311 -0.3417 6.1796 12 1 0.3811 1.9295 6.1757 13 1 -0.2729 0.3871 4.4224 14 6 2.8775 -1.7221 1.0751 15 8 3.3431 -2.2428 2.0665 16 6 3.2644 -2.2241 -0.2921 17 6 2.0276 -2.7822 -0.9992 18 6 1.4474 -3.9352 -0.1778 19 6 2.4965 -5.0399 -0.0374 20 6 1.9160 -6.1933 0.7834 21 6 3.7332 -4.4820 0.6697 22 6 4.3135 -3.3289 -0.1517 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.5679 0.1555 2.4526 31 1 1.5655 -1.1154 3.1994 32 1 2.9656 2.6578 5.6310 33 1 3.6778 -1.4027 -0.8773 34 1 1.2802 -1.9951 -1.0993 35 1 2.3075 -3.1457 -1.9879 36 1 0.5660 -4.3325 -0.6814 37 1 1.1676 -3.5720 0.8111 38 1 2.7763 -5.4031 -1.0263 39 1 1.6359 -5.8304 1.7724 40 1 1.0351 -6.5907 0.2793 41 1 2.6635 -6.9801 0.8838 42 1 4.4808 -5.2688 0.7694 43 1 3.4534 -4.1187 1.6586 44 1 4.5929 -3.6923 -1.1406 45 1 5.1946 -2.9313 0.3521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116291970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:14 Heat of formation + Delta-G solvation = -76.704276 kcal Electronic energy + Delta-G solvation = -22523.631819 eV Core-core repulsion = 19539.435087 eV Total energy + Delta-G solvation = -2984.196732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.67213 -38.70703 -37.46985 -34.93690 -33.65920 -32.55875 -31.62686 -29.98028 -28.06452 -27.47130 -24.75117 -23.72747 -23.11255 -21.96619 -21.00392 -19.29482 -19.05660 -17.71777 -16.98012 -16.55272 -16.26886 -15.40500 -15.27434 -15.15880 -14.91997 -14.60796 -14.58193 -14.16364 -13.92033 -13.62595 -13.36922 -13.26055 -13.04630 -12.92593 -12.78840 -12.65935 -12.41978 -12.35360 -12.31448 -12.27384 -11.91801 -11.89029 -11.67966 -11.49728 -11.32514 -10.95722 -10.83132 -10.80444 -10.16605 -9.30153 -8.31475 -6.32991 1.28465 1.32521 1.40314 1.92824 2.29931 2.38198 3.02446 3.61475 3.77651 3.86879 3.97933 4.02712 4.25823 4.28310 4.34945 4.39398 4.51538 4.56548 4.68881 4.72022 4.75094 4.81931 4.87129 4.90361 4.91226 4.96644 5.01420 5.05420 5.07995 5.11790 5.16553 5.18576 5.34129 5.39888 5.43630 5.48150 5.49254 5.50020 5.58940 5.73062 5.83740 6.30356 6.67560 6.85206 7.26419 7.57336 8.85501 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020132 B = 0.006724 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.482779 B = 4163.477285 C = 4585.485519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.121 3.879 3 C -0.155 4.155 4 N -0.594 5.594 5 C 0.227 3.773 6 C -0.515 4.515 7 H 0.031 0.969 8 C 0.009 3.991 9 N -0.947 5.947 10 Si 0.940 3.060 11 H -0.280 1.280 12 H -0.275 1.275 13 H -0.240 1.240 14 C 0.504 3.496 15 O -0.587 6.587 16 C -0.105 4.105 17 C -0.111 4.111 18 C -0.116 4.116 19 C -0.084 4.084 20 C -0.145 4.145 21 C -0.132 4.132 22 C -0.093 4.093 23 H 0.043 0.957 24 H 0.097 0.903 25 H 0.065 0.935 26 H 0.122 0.878 27 H 0.031 0.969 28 H 0.091 0.909 29 H 0.040 0.960 30 H 0.046 0.954 31 H 0.008 0.992 32 H 0.266 0.734 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.025 0.975 38 H 0.091 0.909 39 H 0.030 0.970 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.098 0.902 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.747 -11.958 -17.488 22.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.018 3.982 3 C -0.213 4.213 4 N -0.325 5.325 5 C 0.105 3.895 6 C -0.554 4.554 7 H 0.050 0.950 8 C -0.189 4.189 9 N -0.588 5.588 10 Si 0.763 3.237 11 H -0.206 1.206 12 H -0.201 1.201 13 H -0.164 1.164 14 C 0.293 3.707 15 O -0.468 6.468 16 C -0.126 4.126 17 C -0.148 4.148 18 C -0.153 4.153 19 C -0.102 4.102 20 C -0.202 4.202 21 C -0.169 4.169 22 C -0.131 4.131 23 H 0.062 0.938 24 H 0.116 0.884 25 H 0.084 0.916 26 H 0.139 0.861 27 H 0.050 0.950 28 H 0.109 0.891 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.026 0.974 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.124 0.876 36 H 0.103 0.897 37 H 0.044 0.956 38 H 0.109 0.891 39 H 0.049 0.951 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.116 0.884 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.505 -12.094 -16.833 21.723 hybrid contribution 0.136 0.501 1.665 1.744 sum -6.369 -11.592 -15.168 20.125 Atomic orbital electron populations 1.22164 0.93622 1.02744 1.03153 1.21598 0.95728 0.93200 0.87630 1.22122 1.00014 0.96757 1.02381 1.48113 1.45241 1.31637 1.07501 1.19185 0.95067 0.93410 0.81849 1.21534 1.11021 1.20560 1.02294 0.95050 1.25783 0.99523 0.94861 0.98691 1.70048 1.39577 1.29504 1.19711 0.85834 0.80446 0.78027 0.79381 1.20616 1.20060 1.16353 1.21354 0.77755 0.79195 0.92360 1.90556 1.54724 1.59376 1.42120 1.21439 0.99277 0.99705 0.92184 1.21798 0.95010 0.98452 0.99588 1.21604 0.98755 0.95913 0.99032 1.21110 0.94473 0.94885 0.99781 1.21808 1.01243 0.97931 0.99252 1.21836 0.97590 0.97130 1.00375 1.21298 0.96116 0.94614 1.01079 0.93828 0.88385 0.91616 0.86058 0.95005 0.89070 0.94030 0.93599 0.97428 0.92549 0.87766 0.89704 0.87561 0.89704 0.95567 0.89100 0.95114 0.91252 0.92243 0.92301 0.92721 0.88382 0.94310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 8.71 71.98 0.63 -3.28 16 2 C 0.12 3.58 2.33 44.99 0.10 3.69 16 3 C -0.15 -5.09 8.61 71.98 0.62 -4.47 16 4 N -0.59 -24.12 2.39 -802.15 -1.92 -26.04 16 5 C 0.23 11.29 3.76 85.63 0.32 11.61 16 6 C -0.52 -30.65 8.41 25.60 0.22 -30.43 16 7 H 0.03 2.09 7.83 -2.91 -0.02 2.06 16 8 C 0.01 0.52 5.47 84.65 0.46 0.98 16 9 N -0.95 -61.11 13.96 21.45 0.30 -60.81 16 10 Si 0.94 45.84 27.47 68.60 1.88 47.73 16 11 H -0.28 -13.85 7.11 99.48 0.71 -13.15 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 H -0.24 -10.58 6.54 99.48 0.65 -9.93 16 14 C 0.50 20.47 5.54 87.66 0.49 20.96 16 15 O -0.59 -29.80 13.16 -3.02 -0.04 -29.84 16 16 C -0.10 -2.91 2.16 -11.54 -0.02 -2.93 16 17 C -0.11 -2.21 5.01 30.59 0.15 -2.06 16 18 C -0.12 -2.62 4.98 30.59 0.15 -2.47 16 19 C -0.08 -1.86 2.72 -10.80 -0.03 -1.89 16 20 C -0.15 -3.10 9.20 71.98 0.66 -2.44 16 21 C -0.13 -3.79 4.91 30.59 0.15 -3.64 16 22 C -0.09 -2.52 5.11 30.60 0.16 -2.36 16 23 H 0.04 1.28 6.51 -2.39 -0.02 1.27 16 24 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.06 1.48 7.69 -2.39 -0.02 1.46 16 26 H 0.12 2.74 4.21 -2.38 -0.01 2.73 16 27 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.04 1.69 6.93 -2.39 -0.02 1.67 16 30 H 0.05 2.13 5.23 -2.39 -0.01 2.12 16 31 H 0.01 0.42 6.91 -2.39 -0.02 0.40 16 32 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 33 H 0.10 2.56 7.51 -2.39 -0.02 2.54 16 34 H 0.08 1.55 4.62 -2.39 -0.01 1.54 16 35 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.03 0.79 7.22 -2.38 -0.02 0.78 16 38 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.05 2.12 5.39 -2.39 -0.01 2.10 16 44 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.04 1.23 8.13 -2.38 -0.02 1.22 16 Total: -1.00 -77.13 330.69 5.18 -71.96 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.89 Total: 15.74 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 4.06 Total: -18.74 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -1.62 Total: -86.85 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.04 Total: -29.84 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.88 Total: 47.73 kcal Total: -77.13 5.18 -71.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116291970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.746 kcal (2) G-P(sol) polarization free energy of solvation -77.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds