Wall clock time and date at job start Mon Mar 30 2020 07:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 120.00058 * 2 1 4 4 C 1.50706 * 109.47106 * 89.99968 * 3 2 1 5 5 H 1.07999 * 119.99515 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00176 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00200 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 120.00139 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47145 * 89.99836 * 8 6 4 10 10 H 1.48496 * 109.47547 * 210.00333 * 8 6 4 11 11 H 1.48499 * 109.47030 * 330.00237 * 8 6 4 12 12 C 1.34779 * 119.99726 * 180.02562 * 2 1 3 13 13 O 1.21283 * 119.99426 * 179.97438 * 12 2 1 14 14 C 1.50698 * 119.99936 * 0.02562 * 12 2 1 15 15 C 1.53004 * 109.46822 * 179.97438 * 14 12 2 16 16 H 1.08997 * 109.47357 * 305.00148 * 15 14 12 17 17 C 1.53002 * 109.47058 * 64.99902 * 15 14 12 18 18 C 1.52992 * 109.47348 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47244 * 300.00250 * 18 17 15 20 20 C 1.52996 * 109.47095 * 60.00137 * 19 18 17 21 21 C 1.52997 * 109.47349 * 59.99869 * 20 19 18 22 22 C 1.53001 * 109.47398 * 179.97438 * 20 19 18 23 23 C 1.52998 * 109.47099 * 184.99885 * 15 14 12 24 24 H 1.09003 * 109.47272 * 89.99965 * 1 2 3 25 25 H 1.09002 * 109.47278 * 209.99857 * 1 2 3 26 26 H 1.09000 * 109.47206 * 329.99759 * 1 2 3 27 27 H 1.09001 * 109.47001 * 330.00259 * 3 2 1 28 28 H 1.09000 * 109.47574 * 210.00475 * 3 2 1 29 29 H 0.96999 * 120.00061 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.47466 * 299.99727 * 14 12 2 31 31 H 1.09004 * 109.47173 * 60.00207 * 14 12 2 32 32 H 1.08995 * 109.47165 * 300.00454 * 17 15 14 33 33 H 1.09011 * 109.46971 * 59.99964 * 17 15 14 34 34 H 1.08997 * 109.46922 * 60.00334 * 18 17 15 35 35 H 1.09001 * 109.47390 * 180.02562 * 18 17 15 36 36 H 1.09009 * 109.47019 * 179.97438 * 19 18 17 37 37 H 1.08997 * 109.47230 * 299.99895 * 19 18 17 38 38 H 1.08999 * 109.47738 * 60.00276 * 21 20 19 39 39 H 1.09010 * 109.47263 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.47413 * 299.99728 * 21 20 19 41 41 H 1.09011 * 109.46903 * 59.99608 * 22 20 19 42 42 H 1.09001 * 109.47224 * 179.97438 * 22 20 19 43 43 H 1.08996 * 109.47208 * 299.99976 * 22 20 19 44 44 H 1.08997 * 109.47230 * 300.00340 * 23 15 14 45 45 H 1.09001 * 109.46920 * 60.00166 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 1 2.0981 1.0957 2.2417 6 6 3.1260 2.8779 1.6728 7 7 3.3456 3.2573 2.9128 8 14 3.7330 3.9292 0.2531 9 1 2.6811 4.9074 -0.1236 10 1 4.9605 4.6563 0.6649 11 1 4.0398 3.0596 -0.9109 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3853 -2.4723 -0.0017 15 6 2.3796 -3.6353 -0.0027 16 1 3.0637 -3.5277 -0.8444 17 6 3.1744 -3.6279 1.3046 18 6 4.1681 -4.7911 1.3039 19 6 3.4068 -6.1122 1.1773 20 6 2.6122 -6.1196 -0.1301 21 6 3.5725 -5.9691 -1.3115 22 6 1.8514 -7.4410 -0.2570 23 6 1.6187 -4.9566 -0.1296 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6084 2.0283 -0.5138 28 1 3.1499 1.1384 -0.5139 29 1 3.8224 4.0832 3.0900 30 1 0.7583 -2.5307 0.8880 31 1 0.7590 -2.5294 -0.8920 32 1 3.7163 -2.6866 1.3951 33 1 2.4901 -3.7355 2.1464 34 1 4.8523 -4.6839 0.4623 35 1 4.7340 -4.7861 2.2355 36 1 4.1150 -6.9410 1.1764 37 1 2.7227 -6.2194 2.0190 38 1 4.2806 -6.7978 -1.3122 39 1 3.0063 -5.9740 -2.2430 40 1 4.1149 -5.0279 -1.2214 41 1 1.1672 -7.5486 0.5847 42 1 1.2849 -7.4460 -1.1883 43 1 2.5597 -8.2694 -0.2577 44 1 0.9346 -5.0642 0.7121 45 1 1.0525 -4.9618 -1.0610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122608259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:34 Heat of formation + Delta-G solvation = -68.534991 kcal Electronic energy + Delta-G solvation = -21484.934065 eV Core-core repulsion = 18501.091580 eV Total energy + Delta-G solvation = -2983.842485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.97220 -38.58024 -34.97023 -33.67457 -32.53047 -31.77990 -28.90447 -27.40823 -26.97189 -26.23093 -25.61298 -22.57804 -21.72195 -20.38954 -18.54466 -18.09570 -16.92600 -16.27191 -15.43213 -15.18952 -14.93663 -14.60645 -14.27072 -14.02179 -13.82417 -13.37260 -12.89048 -12.63934 -12.53379 -12.33511 -12.19955 -11.94162 -11.87560 -11.81211 -11.61880 -11.49967 -11.26118 -11.10046 -10.85966 -10.84864 -10.65268 -10.50135 -10.08439 -10.05176 -9.90337 -9.79658 -9.51936 -8.79172 -8.57512 -7.63851 -6.06918 -4.05340 3.28093 3.36387 3.40993 3.43791 3.92343 4.41505 4.64065 4.67998 4.75214 5.06777 5.13992 5.24759 5.28969 5.37300 5.44628 5.50540 5.56119 5.60193 5.61178 5.68206 5.73519 5.76405 5.84110 5.87479 5.88413 5.92288 5.99495 6.06029 6.09021 6.13722 6.19417 6.33492 6.38199 6.41191 6.50938 6.70783 6.75270 6.84438 7.02122 7.39998 7.63910 8.32121 8.49920 8.95825 9.07063 9.53848 11.06567 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031251 B = 0.004329 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.767765 B = 6466.436704 C = 6758.505512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.601 5.601 3 C 0.215 3.785 4 C -0.527 4.527 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.264 1.264 12 C 0.506 3.494 13 O -0.538 6.538 14 C -0.136 4.136 15 C -0.070 4.070 16 H 0.079 0.921 17 C -0.121 4.121 18 C -0.118 4.118 19 C -0.107 4.107 20 C -0.064 4.064 21 C -0.146 4.146 22 C -0.140 4.140 23 C -0.102 4.102 24 H 0.043 0.957 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.023 0.977 28 H 0.040 0.960 29 H 0.264 0.736 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.593 -18.310 -7.382 20.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.333 5.333 3 C 0.094 3.906 4 C -0.566 4.566 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.189 1.189 12 C 0.293 3.707 13 O -0.416 6.416 14 C -0.176 4.176 15 C -0.089 4.089 16 H 0.097 0.903 17 C -0.158 4.158 18 C -0.156 4.156 19 C -0.145 4.145 20 C -0.064 4.064 21 C -0.203 4.203 22 C -0.198 4.198 23 C -0.140 4.140 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.870 -18.140 -7.275 20.142 hybrid contribution 0.125 0.754 -0.490 0.908 sum -4.746 -17.385 -7.765 19.623 Atomic orbital electron populations 1.21647 0.81161 1.02923 1.00302 1.47871 1.06166 1.07273 1.72024 1.19640 0.92504 0.80183 0.98256 1.21342 1.36840 1.07046 0.91326 0.90829 1.24860 0.95267 0.97379 0.95551 1.69899 1.41625 1.23529 1.18659 0.86858 0.78873 0.80766 0.83311 1.20147 1.20961 1.18856 1.20423 0.88176 0.85113 0.76951 1.90620 1.13963 1.87140 1.49847 1.21766 0.99209 0.93325 1.03271 1.20924 0.96274 0.91973 0.99686 0.90276 1.21710 0.98046 0.99921 0.96134 1.21544 0.98155 0.94324 1.01569 1.21607 0.98589 0.97646 0.96621 1.20496 0.95507 0.94751 0.95629 1.21989 0.99028 1.02173 0.97144 1.21867 0.99855 0.96614 1.01418 1.21646 0.97187 0.93733 1.01408 0.93807 0.92132 0.90735 0.95883 0.94154 0.92604 0.89573 0.89879 0.89298 0.92982 0.91796 0.92425 0.92577 0.92264 0.93150 0.93037 0.91519 0.92858 0.92873 0.92944 0.92109 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 10.24 59.85 0.61 1.91 16 2 N -0.60 -12.49 2.86 -182.95 -0.52 -13.02 16 3 C 0.21 5.33 4.23 -5.19 -0.02 5.31 16 4 C -0.53 -15.32 9.94 -34.44 -0.34 -15.66 16 5 H 0.07 2.35 8.06 -52.49 -0.42 1.92 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 7 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 8 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 12 C 0.51 10.22 7.39 -10.99 -0.08 10.14 16 13 O -0.54 -12.94 13.55 5.55 0.08 -12.87 16 14 C -0.14 -1.96 3.73 -27.88 -0.10 -2.06 16 15 C -0.07 -0.96 1.56 -90.62 -0.14 -1.10 16 16 H 0.08 1.20 6.24 -51.93 -0.32 0.87 16 17 C -0.12 -1.83 4.94 -26.73 -0.13 -1.96 16 18 C -0.12 -1.52 5.65 -26.74 -0.15 -1.67 16 19 C -0.11 -1.14 4.73 -26.73 -0.13 -1.27 16 20 C -0.06 -0.64 0.77 -154.53 -0.12 -0.76 16 21 C -0.15 -1.49 7.78 37.16 0.29 -1.20 16 22 C -0.14 -1.19 8.47 37.16 0.31 -0.88 16 23 C -0.10 -1.10 4.01 -26.75 -0.11 -1.21 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 26 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 27 H 0.02 0.54 7.50 -51.93 -0.39 0.15 16 28 H 0.04 1.08 6.48 -51.93 -0.34 0.74 16 29 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 30 H 0.09 1.15 7.40 -51.93 -0.38 0.77 16 31 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 32 H 0.09 1.71 5.95 -51.93 -0.31 1.40 16 33 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.06 0.84 6.43 -51.93 -0.33 0.51 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 40 H 0.07 0.78 4.81 -51.93 -0.25 0.53 16 41 H 0.05 0.44 8.14 -51.92 -0.42 0.01 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 339.00 15.07 5.11 5.11 Total: -1.00 -32.88 339.00 -7.61 -40.49 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -8.16 Total: -1.22 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -0.21 Total: -8.41 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.25 Total: -40.20 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.88 -7.61 -40.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122608259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.046 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds