Wall clock time and date at job start Mon Mar 30 2020 07:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 120.00058 * 2 1 4 4 C 1.50706 * 109.47106 * 89.99968 * 3 2 1 5 5 H 1.07999 * 119.99515 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00176 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00200 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 120.00139 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47145 * 89.99836 * 8 6 4 10 10 H 1.48496 * 109.47547 * 210.00333 * 8 6 4 11 11 H 1.48499 * 109.47030 * 330.00237 * 8 6 4 12 12 C 1.34779 * 119.99726 * 180.02562 * 2 1 3 13 13 O 1.21283 * 119.99426 * 179.97438 * 12 2 1 14 14 C 1.50698 * 119.99936 * 0.02562 * 12 2 1 15 15 C 1.53004 * 109.46822 * 179.97438 * 14 12 2 16 16 H 1.08997 * 109.47357 * 305.00148 * 15 14 12 17 17 C 1.53002 * 109.47058 * 64.99902 * 15 14 12 18 18 C 1.52992 * 109.47348 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47244 * 300.00250 * 18 17 15 20 20 C 1.52996 * 109.47095 * 60.00137 * 19 18 17 21 21 C 1.52997 * 109.47349 * 59.99869 * 20 19 18 22 22 C 1.53001 * 109.47398 * 179.97438 * 20 19 18 23 23 C 1.52998 * 109.47099 * 184.99885 * 15 14 12 24 24 H 1.09003 * 109.47272 * 89.99965 * 1 2 3 25 25 H 1.09002 * 109.47278 * 209.99857 * 1 2 3 26 26 H 1.09000 * 109.47206 * 329.99759 * 1 2 3 27 27 H 1.09001 * 109.47001 * 330.00259 * 3 2 1 28 28 H 1.09000 * 109.47574 * 210.00475 * 3 2 1 29 29 H 0.96999 * 120.00061 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.47466 * 299.99727 * 14 12 2 31 31 H 1.09004 * 109.47173 * 60.00207 * 14 12 2 32 32 H 1.08995 * 109.47165 * 300.00454 * 17 15 14 33 33 H 1.09011 * 109.46971 * 59.99964 * 17 15 14 34 34 H 1.08997 * 109.46922 * 60.00334 * 18 17 15 35 35 H 1.09001 * 109.47390 * 180.02562 * 18 17 15 36 36 H 1.09009 * 109.47019 * 179.97438 * 19 18 17 37 37 H 1.08997 * 109.47230 * 299.99895 * 19 18 17 38 38 H 1.08999 * 109.47738 * 60.00276 * 21 20 19 39 39 H 1.09010 * 109.47263 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.47413 * 299.99728 * 21 20 19 41 41 H 1.09011 * 109.46903 * 59.99608 * 22 20 19 42 42 H 1.09001 * 109.47224 * 179.97438 * 22 20 19 43 43 H 1.08996 * 109.47208 * 299.99976 * 22 20 19 44 44 H 1.08997 * 109.47230 * 300.00340 * 23 15 14 45 45 H 1.09001 * 109.46920 * 60.00166 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 1 2.0981 1.0957 2.2417 6 6 3.1260 2.8779 1.6728 7 7 3.3456 3.2573 2.9128 8 14 3.7330 3.9292 0.2531 9 1 2.6811 4.9074 -0.1236 10 1 4.9605 4.6563 0.6649 11 1 4.0398 3.0596 -0.9109 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3853 -2.4723 -0.0017 15 6 2.3796 -3.6353 -0.0027 16 1 3.0637 -3.5277 -0.8444 17 6 3.1744 -3.6279 1.3046 18 6 4.1681 -4.7911 1.3039 19 6 3.4068 -6.1122 1.1773 20 6 2.6122 -6.1196 -0.1301 21 6 3.5725 -5.9691 -1.3115 22 6 1.8514 -7.4410 -0.2570 23 6 1.6187 -4.9566 -0.1296 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6084 2.0283 -0.5138 28 1 3.1499 1.1384 -0.5139 29 1 3.8224 4.0832 3.0900 30 1 0.7583 -2.5307 0.8880 31 1 0.7590 -2.5294 -0.8920 32 1 3.7163 -2.6866 1.3951 33 1 2.4901 -3.7355 2.1464 34 1 4.8523 -4.6839 0.4623 35 1 4.7340 -4.7861 2.2355 36 1 4.1150 -6.9410 1.1764 37 1 2.7227 -6.2194 2.0190 38 1 4.2806 -6.7978 -1.3122 39 1 3.0063 -5.9740 -2.2430 40 1 4.1149 -5.0279 -1.2214 41 1 1.1672 -7.5486 0.5847 42 1 1.2849 -7.4460 -1.1883 43 1 2.5597 -8.2694 -0.2577 44 1 0.9346 -5.0642 0.7121 45 1 1.0525 -4.9618 -1.0610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122608259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:34 Heat of formation + Delta-G solvation = -88.505277 kcal Electronic energy + Delta-G solvation = -21485.800042 eV Core-core repulsion = 18501.091580 eV Total energy + Delta-G solvation = -2984.708462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.19033 -39.89049 -36.64193 -34.86789 -34.59528 -32.86668 -30.73148 -28.28076 -28.10292 -27.23255 -27.03112 -24.38197 -22.83159 -21.59393 -19.86269 -19.22218 -19.14462 -17.73687 -17.06124 -16.59990 -16.12107 -15.83152 -15.58483 -15.38835 -14.75671 -14.67784 -14.43389 -14.07998 -13.75831 -13.68583 -13.62546 -13.30633 -13.16511 -12.87587 -12.67056 -12.64135 -12.55213 -12.38320 -12.22856 -12.04281 -12.02092 -11.77678 -11.76347 -11.61042 -11.08973 -10.97286 -10.83524 -10.76318 -10.34334 -9.33891 -8.35429 -6.40370 1.30011 1.34894 1.45803 1.88553 2.29983 2.41540 2.98744 3.69838 3.74499 3.78444 3.98749 4.13676 4.28421 4.35354 4.42126 4.51823 4.54451 4.59779 4.67405 4.69162 4.75822 4.80206 4.85629 4.88255 4.92941 4.96708 4.99723 5.01909 5.08567 5.13146 5.17124 5.21369 5.27882 5.35507 5.42502 5.46534 5.53535 5.58301 5.64231 5.66552 5.73756 6.23956 6.60774 6.76723 7.21289 7.50778 8.81751 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031251 B = 0.004329 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.767765 B = 6466.436704 C = 6758.505512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.613 5.613 3 C 0.223 3.777 4 C -0.536 4.536 5 H 0.026 0.974 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.950 3.050 9 H -0.250 1.250 10 H -0.281 1.281 11 H -0.257 1.257 12 C 0.492 3.508 13 O -0.589 6.589 14 C -0.123 4.123 15 C -0.066 4.066 16 H 0.061 0.939 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.102 4.102 20 C -0.064 4.064 21 C -0.146 4.146 22 C -0.135 4.135 23 C -0.095 4.095 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.017 0.983 29 H 0.268 0.732 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.043 0.957 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.607 -19.882 -9.490 23.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.345 5.345 3 C 0.101 3.899 4 C -0.574 4.574 5 H 0.045 0.955 6 C -0.188 4.188 7 N -0.586 5.586 8 Si 0.772 3.228 9 H -0.174 1.174 10 H -0.207 1.207 11 H -0.182 1.182 12 C 0.282 3.718 13 O -0.470 6.470 14 C -0.163 4.163 15 C -0.084 4.084 16 H 0.079 0.921 17 C -0.158 4.158 18 C -0.154 4.154 19 C -0.139 4.139 20 C -0.064 4.064 21 C -0.203 4.203 22 C -0.193 4.193 23 C -0.132 4.132 24 H 0.098 0.902 25 H 0.108 0.892 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.036 0.964 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.138 0.862 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.941 -19.733 -9.389 22.928 hybrid contribution 0.770 1.218 0.265 1.465 sum -6.171 -18.515 -9.124 21.544 Atomic orbital electron populations 1.21957 0.77756 1.03882 1.02883 1.48033 1.08405 1.06072 1.71942 1.19284 0.92662 0.82850 0.95141 1.21575 1.36781 1.06651 0.92433 0.95534 1.25872 0.95277 0.98986 0.98661 1.70055 1.42824 1.24473 1.21292 0.85685 0.78831 0.78947 0.79329 1.17388 1.20704 1.18154 1.21549 0.88032 0.86723 0.75474 1.90600 1.16519 1.88004 1.51867 1.21810 0.99080 0.89707 1.05681 1.20884 0.96041 0.93712 0.97800 0.92104 1.21630 0.98375 0.98282 0.97472 1.21510 0.97818 0.95105 1.00978 1.21581 0.98772 0.96123 0.97473 1.20513 0.95366 0.95630 0.94857 1.21975 0.99247 1.01280 0.97771 1.21814 0.99910 0.95361 1.02174 1.21609 0.97111 0.91689 1.02812 0.90222 0.89187 0.91910 0.93599 0.96449 0.92272 0.87855 0.86200 0.94447 0.92683 0.92711 0.92910 0.91405 0.91681 0.92391 0.92132 0.93766 0.92246 0.91969 0.92366 0.91039 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.20 10.24 127.77 1.31 3.51 16 2 N -0.61 -25.28 2.86 -851.11 -2.43 -27.72 16 3 C 0.22 11.19 4.23 85.64 0.36 11.55 16 4 C -0.54 -32.35 9.94 25.60 0.25 -32.09 16 5 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 6 C 0.01 0.59 5.47 84.65 0.46 1.06 16 7 N -0.95 -60.88 13.96 21.44 0.30 -60.58 16 8 Si 0.95 45.36 27.47 68.60 1.88 47.25 16 9 H -0.25 -10.86 7.11 99.48 0.71 -10.16 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.26 -11.94 6.54 99.48 0.65 -11.29 16 12 C 0.49 20.05 7.39 87.66 0.65 20.70 16 13 O -0.59 -29.80 13.55 -3.04 -0.04 -29.84 16 14 C -0.12 -3.32 3.73 29.85 0.11 -3.21 16 15 C -0.07 -1.74 1.56 -10.79 -0.02 -1.76 16 16 H 0.06 1.86 6.24 -2.39 -0.01 1.84 16 17 C -0.12 -3.76 4.94 30.59 0.15 -3.60 16 18 C -0.12 -3.06 5.65 30.59 0.17 -2.89 16 19 C -0.10 -2.01 4.73 30.59 0.14 -1.86 16 20 C -0.06 -1.11 0.77 -52.20 -0.04 -1.15 16 21 C -0.15 -2.72 7.78 71.98 0.56 -2.16 16 22 C -0.14 -1.80 8.47 71.98 0.61 -1.19 16 23 C -0.09 -1.75 4.01 30.58 0.12 -1.63 16 24 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.09 2.02 6.44 -2.39 -0.02 2.00 16 26 H 0.06 1.94 8.07 -2.39 -0.02 1.92 16 27 H 0.05 2.08 7.50 -2.39 -0.02 2.07 16 28 H 0.02 0.95 6.48 -2.39 -0.02 0.94 16 29 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 30 H 0.10 2.47 7.40 -2.39 -0.02 2.45 16 31 H 0.12 2.39 8.11 -2.38 -0.02 2.37 16 32 H 0.04 1.55 5.95 -2.39 -0.01 1.54 16 33 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.05 1.52 6.43 -2.39 -0.02 1.50 16 35 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 39 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.04 1.02 4.81 -2.39 -0.01 1.01 16 41 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -76.90 339.00 5.44 -71.46 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.88 Total: 14.16 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 4.85 Total: -14.73 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -2.13 Total: -88.30 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.04 Total: -29.84 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.25 kcal Total: -76.90 5.44 -71.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122608259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.042 kcal (2) G-P(sol) polarization free energy of solvation -76.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds