Wall clock time and date at job start Mon Mar 30 2020 07:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 110.26917 * 2 1 4 4 C 1.54940 * 110.30874 * 237.80584 * 2 1 3 5 5 C 1.55303 * 100.94020 * 204.63753 * 4 2 1 6 6 H 1.08998 * 111.02485 * 275.86008 * 5 4 2 7 7 N 1.46899 * 110.84961 * 152.32086 * 5 4 2 8 8 C 1.46897 * 111.00217 * 175.93103 * 7 5 4 9 9 C 1.50700 * 109.47430 * 292.05493 * 8 7 5 10 10 H 1.08003 * 119.99309 * 355.34137 * 9 8 7 11 11 C 1.37876 * 120.00601 * 175.34164 * 9 8 7 12 12 N 1.31514 * 120.00127 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 119.99813 * 0.02562 * 11 9 8 14 14 H 1.48507 * 109.47489 * 89.99598 * 13 11 9 15 15 H 1.48496 * 109.47230 * 209.99759 * 13 11 9 16 16 H 1.48500 * 109.47016 * 330.00111 * 13 11 9 17 17 C 1.46898 * 111.00115 * 51.97755 * 7 5 4 18 18 C 1.53003 * 117.50006 * 252.40564 * 17 7 5 19 19 C 1.53004 * 117.50406 * 183.78032 * 17 7 5 20 20 C 1.54385 * 102.25404 * 34.13153 * 5 4 2 21 21 C 1.52999 * 109.83070 * 98.15675 * 20 5 4 22 22 C 1.53000 * 109.83200 * 219.03973 * 20 5 4 23 23 O 1.43233 * 107.58823 * 338.64580 * 20 5 4 24 24 H 1.09002 * 109.46967 * 299.36222 * 1 2 3 25 25 H 1.08993 * 109.47173 * 59.36415 * 1 2 3 26 26 H 1.09000 * 109.46678 * 179.36398 * 1 2 3 27 27 H 1.09005 * 109.46646 * 180.63593 * 3 2 1 28 28 H 1.09000 * 109.46992 * 300.63380 * 3 2 1 29 29 H 1.08999 * 109.47245 * 60.64230 * 3 2 1 30 30 H 1.09001 * 111.12897 * 86.71864 * 4 2 1 31 31 H 1.09001 * 111.12673 * 322.55498 * 4 2 1 32 32 H 1.09001 * 109.47339 * 52.05831 * 8 7 5 33 33 H 1.09008 * 109.47415 * 172.05618 * 8 7 5 34 34 H 0.97003 * 119.99893 * 180.02562 * 12 11 9 35 35 H 1.09000 * 115.55962 * 38.08944 * 17 7 5 36 36 H 1.09000 * 117.49487 * 359.97438 * 18 17 7 37 37 H 1.08997 * 117.50450 * 145.01930 * 18 17 7 38 38 H 1.08993 * 117.49748 * 214.98120 * 19 17 7 39 39 H 1.09000 * 117.49368 * 359.97438 * 19 17 7 40 40 H 1.09002 * 109.47174 * 66.33029 * 21 20 5 41 41 H 1.09002 * 109.47397 * 186.33329 * 21 20 5 42 42 H 1.09003 * 109.47099 * 306.33479 * 21 20 5 43 43 H 1.08999 * 109.46924 * 59.99860 * 22 20 5 44 44 H 1.08997 * 109.47168 * 179.97438 * 22 20 5 45 45 H 1.09000 * 109.47084 * 299.99923 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0601 1.4353 0.0000 4 6 2.0678 -0.7742 -1.2297 5 6 3.4699 -1.2031 -0.7178 6 1 4.2001 -0.4072 -0.8646 7 7 3.9103 -2.4409 -1.3749 8 6 5.2752 -2.7975 -0.9655 9 6 6.2455 -1.7835 -1.5147 10 1 5.8944 -1.0001 -2.1701 11 6 7.5812 -1.8558 -1.1805 12 7 8.4279 -0.9712 -1.6601 13 14 8.1883 -3.2112 -0.0475 14 1 8.5821 -4.3930 -0.8560 15 1 9.3616 -2.7246 0.7219 16 1 7.1040 -3.5935 0.8923 17 6 3.8123 -2.3250 -2.8360 18 6 2.6970 -3.1064 -3.5335 19 6 4.1509 -3.5640 -3.6675 20 6 3.2113 -1.4411 0.7855 21 6 3.0025 -2.9342 1.0462 22 6 4.4002 -0.9329 1.6036 23 8 2.0287 -0.7157 1.1413 24 1 -0.3633 0.5039 0.8957 25 1 -0.3633 0.5236 -0.8842 26 1 -0.3633 -1.0276 -0.0114 27 1 3.1500 1.4200 -0.0114 28 1 1.6947 1.9575 -0.8843 29 1 1.7134 1.9507 0.8957 30 1 2.1496 -0.1223 -2.0994 31 1 1.4471 -1.6429 -1.4492 32 1 5.3373 -2.8076 0.1226 33 1 5.5244 -3.7855 -1.3528 34 1 9.3677 -1.0223 -1.4253 35 1 4.0801 -1.3527 -3.2496 36 1 2.0363 -3.7069 -2.9082 37 1 2.2312 -2.6484 -4.4060 38 1 4.6415 -3.4068 -4.6279 39 1 4.4468 -4.4650 -3.1302 40 1 3.9305 -3.4708 0.8489 41 1 2.7099 -3.0842 2.0854 42 1 2.2182 -3.3114 0.3899 43 1 4.5339 0.1342 1.4257 44 1 4.2113 -1.1033 2.6634 45 1 5.3020 -1.4670 1.3043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123988694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:11 Heat of formation + Delta-G solvation = -15.958386 kcal Electronic energy + Delta-G solvation = -22891.625600 eV Core-core repulsion = 19910.063007 eV Total energy + Delta-G solvation = -2981.562593 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.16863 -37.40402 -34.61471 -33.29887 -32.40228 -30.56102 -29.20932 -27.41125 -26.51155 -26.27332 -22.72816 -22.39471 -21.65685 -20.34585 -19.26107 -18.69222 -16.92558 -15.85146 -15.58868 -14.86871 -14.63593 -14.23365 -13.97227 -13.73911 -13.25789 -13.07685 -12.89017 -12.59325 -12.34489 -12.15634 -12.13278 -11.88270 -11.61682 -11.44078 -11.38206 -11.09085 -10.96379 -10.94105 -10.89831 -10.46589 -10.36227 -10.12314 -10.06214 -9.91926 -9.63930 -9.48603 -9.18510 -9.09119 -8.61354 -7.32004 -6.13325 -4.11948 3.23704 3.32058 3.33561 4.05412 4.35550 4.45841 4.59465 4.94187 5.08430 5.18642 5.21080 5.41953 5.50710 5.59317 5.60312 5.66098 5.73454 5.76170 5.80804 5.87123 5.98845 6.07646 6.10181 6.12061 6.21618 6.24319 6.24700 6.35879 6.41700 6.44934 6.48498 6.54974 6.57975 6.69972 6.72405 6.74483 6.90693 6.98132 7.13137 7.53282 7.63288 7.96911 8.07049 8.41632 8.89085 9.49550 10.99819 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018306 B = 0.008071 C = 0.006842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.197503 B = 3468.338867 C = 4091.550888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.100 3.900 3 C -0.161 4.161 4 C -0.136 4.136 5 C 0.073 3.927 6 H 0.071 0.929 7 N -0.493 5.493 8 C 0.145 3.855 9 C -0.541 4.541 10 H 0.073 0.927 11 C 0.074 3.926 12 N -0.898 5.898 13 Si 0.870 3.130 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.262 1.262 17 C 0.045 3.955 18 C -0.184 4.184 19 C -0.165 4.165 20 C 0.115 3.885 21 C -0.135 4.135 22 C -0.155 4.155 23 O -0.369 6.369 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.025 0.975 34 H 0.263 0.737 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.041 0.959 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.013 -0.362 1.615 13.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.061 3.939 3 C -0.219 4.219 4 C -0.174 4.174 5 C -0.036 4.036 6 H 0.089 0.911 7 N -0.216 5.216 8 C 0.020 3.980 9 C -0.579 4.579 10 H 0.091 0.909 11 C -0.129 4.129 12 N -0.537 5.537 13 Si 0.697 3.303 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.187 1.187 17 C -0.064 4.064 18 C -0.222 4.222 19 C -0.202 4.202 20 C 0.075 3.925 21 C -0.192 4.192 22 C -0.213 4.213 23 O -0.289 6.289 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.218 -0.689 1.986 13.384 hybrid contribution 1.359 0.085 0.035 1.362 sum -11.859 -0.604 2.021 12.045 Atomic orbital electron populations 1.21810 0.93648 1.02332 1.01756 1.22187 0.93857 0.91764 0.86128 1.22210 1.02177 0.95845 1.01663 1.23313 0.96924 1.00034 0.97121 1.22962 0.95113 0.93037 0.92468 0.91101 1.62249 1.25813 1.30002 1.03582 1.20441 0.84435 0.96525 0.96637 1.21611 0.92498 1.13567 1.30253 0.90943 1.24928 0.96866 0.95465 0.95613 1.69916 1.03470 1.35498 1.44790 0.86941 0.78892 0.82772 0.81711 1.20192 1.21276 1.18707 1.21933 1.01128 0.95077 0.88278 1.23087 0.92060 1.05033 1.02049 1.22807 0.97144 0.99264 1.00994 1.21904 0.84754 0.92205 0.93604 1.21938 1.03168 0.94377 0.99738 1.22211 0.98066 1.01723 0.99271 1.88413 1.42592 1.64082 1.33771 0.92345 0.91738 0.92124 0.91871 0.92075 0.92314 0.90926 0.89914 0.94123 0.95667 0.92732 0.90093 0.89138 0.89986 0.89562 0.88953 0.90603 0.94030 0.92218 0.92664 0.93071 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.95 37.16 0.33 -1.33 16 2 C 0.10 1.47 1.21 -89.59 -0.11 1.36 16 3 C -0.16 -2.23 8.86 37.16 0.33 -1.90 16 4 C -0.14 -2.10 4.54 -24.49 -0.11 -2.21 16 5 C 0.07 1.36 1.56 -65.77 -0.10 1.25 16 6 H 0.07 1.53 6.39 -51.93 -0.33 1.19 16 7 N -0.49 -9.54 3.61 -217.83 -0.79 -10.33 16 8 C 0.15 3.27 2.96 -4.98 -0.01 3.25 16 9 C -0.54 -14.22 8.17 -34.44 -0.28 -14.50 16 10 H 0.07 2.10 6.72 -52.48 -0.35 1.74 16 11 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 12 N -0.90 -26.63 13.96 55.43 0.77 -25.85 16 13 Si 0.87 20.80 27.56 -169.99 -4.69 16.11 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.26 -5.96 6.41 56.52 0.36 -5.60 16 17 C 0.05 0.83 3.07 -67.71 -0.21 0.62 16 18 C -0.18 -2.79 10.13 -26.73 -0.27 -3.06 16 19 C -0.16 -2.83 9.84 -26.73 -0.26 -3.09 16 20 C 0.11 2.05 0.98 -89.89 -0.09 1.96 16 21 C -0.13 -2.33 7.86 37.16 0.29 -2.04 16 22 C -0.16 -2.87 8.61 37.16 0.32 -2.55 16 23 O -0.37 -6.34 10.05 -35.23 -0.35 -6.69 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.98 7.37 -51.93 -0.38 0.60 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.07 8.04 -51.93 -0.42 0.66 16 31 H 0.08 1.27 7.79 -51.93 -0.40 0.86 16 32 H 0.04 0.93 2.54 -51.93 -0.13 0.80 16 33 H 0.03 0.59 6.92 -51.92 -0.36 0.23 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.08 1.63 7.54 -51.93 -0.39 1.24 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.09 1.63 7.53 -51.93 -0.39 1.24 16 40 H 0.08 1.39 5.34 -51.93 -0.28 1.11 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 1.01 8.09 -51.93 -0.42 0.59 16 43 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.08 1.64 6.01 -51.93 -0.31 1.33 16 LS Contribution 336.06 15.07 5.06 5.06 Total: -1.00 -28.06 336.06 -8.25 -36.31 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -7.99 Total: 5.67 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -0.27 Total: -20.28 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: -0.01 Total: -36.18 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.35 Total: -6.69 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.69 Total: 16.11 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.06 -8.25 -36.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123988694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.355 kcal (2) G-P(sol) polarization free energy of solvation -28.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds