Wall clock time and date at job start Mon Mar 30 2020 07:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 110.55212 * 2 1 4 4 C 1.55229 * 110.51768 * 236.98635 * 2 1 3 5 5 C 1.54816 * 101.98507 * 278.38587 * 4 2 1 6 6 H 1.08994 * 110.48862 * 98.00837 * 5 4 2 7 7 N 1.46901 * 110.48296 * 220.51776 * 5 4 2 8 8 C 1.46891 * 111.00381 * 312.11095 * 7 5 4 9 9 C 1.50703 * 109.47401 * 300.21277 * 8 7 5 10 10 H 1.08000 * 119.99401 * 354.73699 * 9 8 7 11 11 C 1.37875 * 120.00172 * 174.73378 * 9 8 7 12 12 N 1.31515 * 119.99771 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00094 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47105 * 270.00240 * 13 11 9 15 15 H 1.48500 * 109.46860 * 149.99902 * 13 11 9 16 16 H 1.48498 * 109.47031 * 29.99909 * 13 11 9 17 17 C 1.46902 * 110.99759 * 188.15135 * 7 5 4 18 18 C 1.52999 * 117.50410 * 235.93371 * 17 7 5 19 19 C 1.53000 * 117.49633 * 167.30808 * 17 7 5 20 20 C 1.54093 * 104.30726 * 339.26024 * 5 4 2 21 21 C 1.53008 * 109.87635 * 117.32789 * 20 5 4 22 22 C 1.52991 * 109.88222 * 238.48107 * 20 5 4 23 23 O 1.43747 * 107.29456 * 357.90887 * 20 5 4 24 24 H 1.08994 * 109.47089 * 282.26848 * 1 2 3 25 25 H 1.09003 * 109.46893 * 42.26609 * 1 2 3 26 26 H 1.09000 * 109.47141 * 162.26542 * 1 2 3 27 27 H 1.09000 * 109.46956 * 181.42225 * 3 2 1 28 28 H 1.08996 * 109.47394 * 301.42442 * 3 2 1 29 29 H 1.09005 * 109.46817 * 61.43034 * 3 2 1 30 30 H 1.09004 * 110.89043 * 160.25403 * 4 2 1 31 31 H 1.09000 * 111.02514 * 36.57719 * 4 2 1 32 32 H 1.09011 * 109.47231 * 180.21384 * 8 7 5 33 33 H 1.09002 * 109.47378 * 60.21559 * 8 7 5 34 34 H 0.96994 * 119.99575 * 179.97438 * 12 11 9 35 35 H 1.09006 * 115.54966 * 21.64764 * 17 7 5 36 36 H 1.09004 * 117.49477 * 359.97438 * 18 17 7 37 37 H 1.08994 * 117.50275 * 145.02614 * 18 17 7 38 38 H 1.09003 * 117.49498 * 214.98397 * 19 17 7 39 39 H 1.08998 * 117.50022 * 359.97438 * 19 17 7 40 40 H 1.08997 * 109.46864 * 67.45559 * 21 20 5 41 41 H 1.08999 * 109.46827 * 187.45623 * 21 20 5 42 42 H 1.08994 * 109.46991 * 307.45221 * 21 20 5 43 43 H 1.09000 * 109.47225 * 46.96484 * 22 20 5 44 44 H 1.09004 * 109.47109 * 166.96053 * 22 20 5 45 45 H 1.08996 * 109.47350 * 286.95978 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0672 1.4326 0.0000 4 6 2.0741 -0.7921 -1.2191 5 6 1.9799 -2.2546 -0.7202 6 1 1.0728 -2.7281 -1.0955 7 7 3.1654 -3.0166 -1.1350 8 6 3.4560 -2.8043 -2.5591 9 6 2.2766 -3.2503 -3.3845 10 1 1.4342 -3.7292 -2.9077 11 6 2.2730 -3.0468 -4.7481 12 7 1.2435 -3.4356 -5.4682 13 14 3.7304 -2.2189 -5.5728 14 1 3.5133 -0.7503 -5.6033 15 1 3.8683 -2.7279 -6.9610 16 1 4.9680 -2.5206 -4.8097 17 6 3.0027 -4.4461 -0.8382 18 6 4.0709 -5.1134 0.0304 19 6 4.0040 -5.4167 -1.4678 20 6 1.9283 -2.1308 0.8149 21 6 0.5994 -2.6808 1.3368 22 6 3.0941 -2.9007 1.4385 23 8 2.0384 -0.7337 1.1348 24 1 -0.3633 0.2184 1.0041 25 1 -0.3633 0.7605 -0.6912 26 1 -0.3633 -0.9788 -0.3130 27 1 3.1567 1.4121 -0.0255 28 1 1.6931 1.9609 -0.8769 29 1 1.7345 1.9453 0.9026 30 1 3.1081 -0.5189 -1.4301 31 1 1.4460 -0.6393 -2.0967 32 1 4.3360 -3.3828 -2.8407 33 1 3.6448 -1.7457 -2.7376 34 1 1.2408 -3.2921 -6.4275 35 1 1.9742 -4.7883 -0.7234 36 1 4.8947 -4.4918 0.3813 37 1 3.7453 -5.8948 0.7171 38 1 3.6342 -6.3976 -1.7667 39 1 4.7831 -4.9946 -2.1025 40 1 0.5632 -3.7580 1.1745 41 1 0.5128 -2.4708 2.4029 42 1 -0.2246 -2.2054 0.8048 43 1 4.0158 -2.6539 0.9116 44 1 3.1911 -2.6252 2.4887 45 1 2.9060 -3.9714 1.3597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123988986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:14 Heat of formation + Delta-G solvation = -4.100570 kcal Electronic energy + Delta-G solvation = -22941.989114 eV Core-core repulsion = 19960.940714 eV Total energy + Delta-G solvation = -2981.048399 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.26371 -37.56802 -33.97369 -33.71111 -32.32177 -31.06358 -28.36200 -27.76191 -26.81927 -26.26452 -23.07382 -22.12524 -21.49296 -19.89155 -19.46562 -18.72350 -16.86775 -15.97657 -15.40063 -15.13585 -14.67069 -14.28713 -14.20630 -13.72659 -13.14222 -12.98237 -12.73194 -12.55910 -12.39117 -12.10754 -11.96254 -11.70811 -11.69018 -11.61473 -11.38867 -11.17714 -10.93840 -10.90672 -10.62715 -10.39361 -10.33944 -10.13007 -10.11774 -9.82564 -9.64890 -9.55813 -9.20441 -9.04966 -8.60707 -7.24223 -6.12843 -4.11256 3.23497 3.32343 3.35513 4.15951 4.36538 4.45190 4.67960 5.02397 5.13661 5.22468 5.25966 5.38419 5.49393 5.52384 5.59358 5.61702 5.74887 5.82160 5.84382 5.90984 5.97804 5.99265 6.11037 6.12048 6.21067 6.22020 6.28914 6.31683 6.40965 6.43478 6.50020 6.57583 6.65383 6.69253 6.73538 6.74577 6.89621 6.97710 7.10336 7.50555 7.54538 7.99541 8.10276 8.42419 8.89958 9.50568 11.00348 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016157 B = 0.008841 C = 0.006750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.542158 B = 3166.158321 C = 4147.279964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.094 3.906 3 C -0.134 4.134 4 C -0.128 4.128 5 C 0.082 3.918 6 H 0.061 0.939 7 N -0.494 5.494 8 C 0.151 3.849 9 C -0.538 4.538 10 H 0.071 0.929 11 C 0.073 3.927 12 N -0.899 5.899 13 Si 0.873 3.127 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.265 1.265 17 C 0.043 3.957 18 C -0.184 4.184 19 C -0.173 4.173 20 C 0.105 3.895 21 C -0.168 4.168 22 C -0.137 4.137 23 O -0.363 6.363 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.031 0.969 33 H 0.028 0.972 34 H 0.262 0.738 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.079 0.921 44 H 0.038 0.962 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.431 3.441 11.430 12.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.054 3.946 3 C -0.191 4.191 4 C -0.166 4.166 5 C -0.028 4.028 6 H 0.079 0.921 7 N -0.216 5.216 8 C 0.025 3.975 9 C -0.576 4.576 10 H 0.090 0.910 11 C -0.129 4.129 12 N -0.538 5.538 13 Si 0.700 3.300 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.190 1.190 17 C -0.067 4.067 18 C -0.222 4.222 19 C -0.210 4.210 20 C 0.065 3.935 21 C -0.226 4.226 22 C -0.194 4.194 23 O -0.283 6.283 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.057 0.943 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.850 3.706 11.699 12.411 hybrid contribution -0.256 -0.045 -1.420 1.443 sum 1.594 3.661 10.279 11.027 Atomic orbital electron populations 1.22408 0.95473 1.02671 1.01878 1.22477 0.92959 0.92719 0.86405 1.21703 1.01646 0.94015 1.01769 1.23218 1.02473 0.93643 0.97291 1.22688 0.93573 0.94205 0.92304 0.92145 1.62260 1.34212 1.04847 1.20323 1.20336 0.97064 0.96581 0.83547 1.21600 1.03842 1.39728 0.92479 0.91050 1.24934 0.95505 0.95074 0.97425 1.69919 1.29975 1.47333 1.06530 0.86888 0.84007 0.80093 0.79010 1.20215 1.21369 1.18955 1.22094 0.93583 0.88289 1.02725 1.23256 1.02761 1.02736 0.93484 1.23057 1.03014 0.99902 0.95071 1.22080 0.94905 0.82020 0.94464 1.22489 0.97769 1.01015 1.01309 1.22151 0.98822 0.99736 0.98684 1.88865 1.83823 1.16691 1.38923 0.92236 0.91948 0.91570 0.91961 0.91476 0.92420 0.90090 0.89857 0.95139 0.95371 0.92771 0.89961 0.88771 0.89874 0.89699 0.88607 0.92152 0.92509 0.91926 0.90181 0.94335 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 7.84 37.16 0.29 -2.08 16 2 C 0.09 1.47 1.25 -89.44 -0.11 1.36 16 3 C -0.13 -1.80 8.96 37.16 0.33 -1.47 16 4 C -0.13 -2.35 4.44 -24.59 -0.11 -2.46 16 5 C 0.08 1.53 1.22 -66.18 -0.08 1.45 16 6 H 0.06 1.27 6.57 -51.93 -0.34 0.93 16 7 N -0.49 -9.73 3.31 -218.33 -0.72 -10.45 16 8 C 0.15 3.44 3.43 -4.98 -0.02 3.42 16 9 C -0.54 -14.18 8.37 -34.44 -0.29 -14.46 16 10 H 0.07 2.07 6.90 -52.49 -0.36 1.71 16 11 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 12 N -0.90 -26.63 13.96 55.43 0.77 -25.86 16 13 Si 0.87 20.93 27.37 -169.99 -4.65 16.28 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.26 -6.14 6.70 56.52 0.38 -5.77 16 17 C 0.04 0.78 3.02 -67.71 -0.20 0.58 16 18 C -0.18 -2.79 7.55 -26.73 -0.20 -3.00 16 19 C -0.17 -3.04 9.68 -26.73 -0.26 -3.30 16 20 C 0.11 1.74 1.09 -90.05 -0.10 1.64 16 21 C -0.17 -2.49 8.28 37.16 0.31 -2.18 16 22 C -0.14 -2.15 6.86 37.15 0.25 -1.89 16 23 O -0.36 -6.23 10.36 -35.23 -0.36 -6.60 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.80 8.05 -51.93 -0.42 0.38 16 26 H 0.07 1.00 5.45 -51.93 -0.28 0.71 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.54 6.74 -51.93 -0.35 1.19 16 31 H 0.08 1.63 8.05 -51.93 -0.42 1.21 16 32 H 0.03 0.72 5.60 -51.92 -0.29 0.43 16 33 H 0.03 0.66 5.34 -51.93 -0.28 0.38 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.08 1.57 7.88 -51.93 -0.41 1.16 16 36 H 0.09 1.42 7.28 -51.93 -0.38 1.04 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.10 1.80 6.51 -51.93 -0.34 1.46 16 40 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.91 5.11 -51.93 -0.27 0.65 16 43 H 0.08 1.36 6.23 -51.93 -0.32 1.04 16 44 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.07 1.11 4.78 -51.93 -0.25 0.87 16 LS Contribution 325.38 15.07 4.90 4.90 Total: -1.00 -28.36 325.38 -8.01 -36.37 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -7.66 Total: 5.82 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -0.28 Total: -20.46 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.05 Total: -36.31 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.36 Total: -6.60 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.65 Total: 16.28 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.36 -8.01 -36.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123988986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.268 kcal (2) G-P(sol) polarization free energy of solvation -28.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds