Wall clock time and date at job start Mon Mar 30 2020 07:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00122 * 2 1 4 4 H 1.48501 * 109.47141 * 270.00462 * 3 2 1 5 5 H 1.48500 * 109.46715 * 30.00070 * 3 2 1 6 6 H 1.48500 * 109.47234 * 149.99792 * 3 2 1 7 7 C 1.37880 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99988 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00179 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47389 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47344 * 179.97438 * 10 9 7 12 12 C 1.46844 * 110.99981 * 37.89531 * 11 10 9 13 13 C 1.53040 * 109.52250 * 185.84318 * 12 11 10 14 14 C 1.53119 * 109.27715 * 300.81548 * 13 12 11 15 15 C 1.53123 * 109.15712 * 57.65703 * 14 13 12 16 16 C 1.46841 * 111.00236 * 162.10700 * 11 10 9 17 17 H 1.09004 * 109.45094 * 294.17069 * 16 11 10 18 18 C 1.53003 * 109.46700 * 54.14274 * 16 11 10 19 19 H 1.08997 * 110.43000 * 49.73269 * 18 16 11 20 20 C 1.54891 * 110.59792 * 287.12124 * 18 16 11 21 21 C 1.54886 * 102.75006 * 203.31957 * 20 18 16 22 22 C 1.54269 * 104.19555 * 37.93945 * 21 20 18 23 23 C 1.53876 * 106.59750 * 336.39382 * 22 21 20 24 24 H 1.08997 * 110.07370 * 240.68598 * 23 22 21 25 25 O 1.42907 * 110.03119 * 119.27982 * 23 22 21 26 26 H 0.96991 * 119.99788 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47080 * 59.99840 * 9 7 2 28 28 H 1.08998 * 109.47094 * 300.00214 * 9 7 2 29 29 H 1.09009 * 109.46884 * 59.99947 * 10 9 7 30 30 H 1.08998 * 109.47113 * 300.00124 * 10 9 7 31 31 H 1.08996 * 109.46391 * 65.82171 * 12 11 10 32 32 H 1.09000 * 109.45544 * 305.84653 * 12 11 10 33 33 H 1.09000 * 109.50313 * 180.88058 * 13 12 11 34 34 H 1.08997 * 109.50553 * 60.76246 * 13 12 11 35 35 H 1.09007 * 109.52389 * 297.75590 * 14 13 12 36 36 H 1.08998 * 109.57729 * 177.59321 * 14 13 12 37 37 H 1.09004 * 109.49960 * 182.40266 * 15 14 13 38 38 H 1.08994 * 109.50301 * 62.28965 * 15 14 13 39 39 H 1.09004 * 110.75875 * 321.63874 * 20 18 16 40 40 H 1.09000 * 110.75430 * 84.81989 * 20 18 16 41 41 H 1.09002 * 110.48605 * 156.62064 * 21 20 18 42 42 H 1.08999 * 110.48749 * 279.13357 * 21 20 18 43 43 H 1.08990 * 110.03604 * 217.10552 * 22 21 20 44 44 H 1.09005 * 110.02736 * 95.67533 * 22 21 20 45 45 H 0.96698 * 113.99555 * 62.83534 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5109 -4.9343 0.0001 12 6 0.3106 -4.8494 -0.8416 13 6 -0.5037 -6.1376 -0.7025 14 6 0.3582 -7.3291 -1.1291 15 6 1.6249 -7.3663 -0.2695 16 6 2.3774 -6.0424 -0.4211 17 1 2.6625 -5.9041 -1.4640 18 6 3.6338 -6.0674 0.4518 19 1 3.3648 -6.0220 1.5071 20 6 4.5776 -4.8962 0.0821 21 6 5.9582 -5.4035 0.5674 22 6 5.9461 -6.9099 0.2347 23 6 4.4682 -7.3319 0.1612 24 1 4.2599 -8.0968 0.9092 25 8 4.1654 -7.8288 -1.1441 26 1 -0.4849 0.8400 -0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8896 29 1 2.8720 -3.6043 0.8895 30 1 2.8720 -3.6043 -0.8905 31 1 0.6055 -4.7167 -1.8824 32 1 -0.2956 -4.0006 -0.5249 33 1 -1.3865 -6.0807 -1.3393 34 1 -0.8108 -6.2637 0.3357 35 1 0.6332 -7.2226 -2.1785 36 1 -0.2027 -8.2535 -0.9915 37 1 2.2629 -8.1872 -0.5970 38 1 1.3514 -7.5118 0.7755 39 1 4.5838 -4.7304 -0.9952 40 1 4.2897 -3.9869 0.6097 41 1 6.7607 -4.9001 0.0282 42 1 6.0656 -5.2489 1.6410 43 1 6.4557 -7.4696 1.0189 44 1 6.4324 -7.0841 -0.7252 45 1 4.6589 -8.6244 -1.3862 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124984152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:51 Heat of formation + Delta-G solvation = -60.395940 kcal Electronic energy + Delta-G solvation = -22094.284536 eV Core-core repulsion = 19110.794986 eV Total energy + Delta-G solvation = -2983.489550 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.92632 -37.62256 -35.02787 -34.00398 -32.40000 -31.45489 -28.88914 -27.84915 -27.16568 -24.92348 -23.24076 -22.01232 -20.64533 -20.18512 -19.51748 -18.91322 -17.31177 -16.31764 -15.60782 -15.13277 -14.78000 -14.52027 -14.23218 -14.11576 -13.84746 -13.16270 -12.94527 -12.76175 -12.52559 -12.41936 -12.31692 -11.88838 -11.35381 -11.26802 -10.97270 -10.95049 -10.80003 -10.74356 -10.53189 -10.46823 -10.38599 -10.25595 -9.93517 -9.82349 -9.68710 -9.54988 -9.13839 -8.87074 -8.30958 -7.45683 -5.97040 -3.98918 3.33541 3.39764 3.42969 4.24487 4.41384 4.52011 4.66316 4.73714 5.03691 5.25111 5.28667 5.34267 5.37735 5.39147 5.53677 5.61384 5.69791 5.73141 5.81936 5.89260 5.94375 6.02324 6.07996 6.10272 6.19159 6.26322 6.30634 6.31662 6.35214 6.47201 6.50420 6.59676 6.63154 6.68393 6.78483 6.87268 7.05513 7.61355 7.68226 7.75866 7.92422 7.97364 8.12545 8.48345 9.08029 9.64593 11.14400 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018474 B = 0.005933 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.302064 B = 4718.005095 C = 6052.092210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.016 3.984 10 C 0.056 3.944 11 N -0.539 5.539 12 C 0.053 3.947 13 C -0.117 4.117 14 C -0.118 4.118 15 C -0.112 4.112 16 C 0.107 3.893 17 H 0.040 0.960 18 C -0.075 4.075 19 H 0.089 0.911 20 C -0.132 4.132 21 C -0.125 4.125 22 C -0.156 4.156 23 C 0.107 3.893 24 H 0.054 0.946 25 O -0.554 6.554 26 H 0.260 0.740 27 H 0.019 0.981 28 H 0.023 0.977 29 H 0.069 0.931 30 H 0.024 0.976 31 H 0.023 0.977 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.690 -17.108 -0.314 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.022 4.022 10 C -0.070 4.070 11 N -0.264 5.264 12 C -0.074 4.074 13 C -0.155 4.155 14 C -0.155 4.155 15 C -0.149 4.149 16 C -0.001 4.001 17 H 0.058 0.942 18 C -0.094 4.094 19 H 0.107 0.893 20 C -0.169 4.169 21 C -0.162 4.162 22 C -0.194 4.194 23 C 0.047 3.953 24 H 0.072 0.928 25 O -0.358 6.358 26 H 0.069 0.931 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 6.982 -16.564 0.170 17.976 hybrid contribution 1.160 0.689 -0.837 1.588 sum 8.142 -15.875 -0.667 17.854 Atomic orbital electron populations 1.69963 1.06010 1.26511 1.50878 1.24988 0.94812 0.99123 0.95382 0.86621 0.79879 0.83624 0.78033 1.20762 1.21241 1.19886 1.21195 0.92960 0.91048 1.50541 0.92807 1.19343 0.94318 0.90906 0.97585 1.22718 0.97146 0.88153 0.98989 1.62099 1.07001 1.04623 1.52633 1.22157 0.92635 0.98029 0.94615 1.21630 0.97567 0.94835 1.01497 1.21553 0.96729 0.97794 0.99453 1.21740 0.96182 0.97403 0.99588 1.21314 0.90999 0.91470 0.96347 0.94247 1.22048 0.94067 0.92699 1.00552 0.89295 1.23158 0.93172 0.98899 1.01702 1.22342 0.98407 0.94550 1.00949 1.22916 0.97065 0.97650 1.01725 1.22437 0.93166 0.95493 0.84189 0.92836 1.86675 1.67802 1.47465 1.33891 0.93052 0.96261 0.95888 0.91249 0.95797 0.95866 0.88975 0.92396 0.91581 0.92787 0.92854 0.90305 0.92501 0.91489 0.88957 0.91898 0.91682 0.91902 0.91207 0.78643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.41 3.86 -27.89 -0.11 0.30 16 10 C 0.06 1.21 3.53 -3.83 -0.01 1.20 16 11 N -0.54 -10.25 4.69 -226.70 -1.06 -11.31 16 12 C 0.05 1.01 4.57 -3.83 -0.02 1.00 16 13 C -0.12 -1.82 6.09 -26.65 -0.16 -1.98 16 14 C -0.12 -1.64 6.00 -26.61 -0.16 -1.80 16 15 C -0.11 -1.58 4.89 -26.65 -0.13 -1.71 16 16 C 0.11 1.74 1.09 -67.73 -0.07 1.67 16 17 H 0.04 0.73 7.64 -51.93 -0.40 0.33 16 18 C -0.07 -1.07 2.31 -88.96 -0.21 -1.28 16 19 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 20 C -0.13 -1.97 4.41 -24.74 -0.11 -2.08 16 21 C -0.12 -1.49 6.83 -25.07 -0.17 -1.66 16 22 C -0.16 -1.59 6.61 -25.61 -0.17 -1.76 16 23 C 0.11 1.20 3.40 -25.62 -0.09 1.11 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 O -0.55 -6.14 9.78 -35.23 -0.34 -6.49 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.02 0.53 6.33 -51.93 -0.33 0.20 16 28 H 0.02 0.65 8.13 -51.93 -0.42 0.23 16 29 H 0.07 1.47 5.60 -51.92 -0.29 1.18 16 30 H 0.02 0.52 6.53 -51.93 -0.34 0.18 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 1.97 5.88 -51.93 -0.31 1.66 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.02 5.54 -51.93 -0.29 0.74 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.09 7.39 -51.93 -0.38 0.71 16 40 H 0.09 1.54 5.14 -51.93 -0.27 1.28 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.68 7.96 -51.93 -0.41 0.27 16 45 H 0.37 2.46 9.11 45.56 0.42 2.88 16 LS Contribution 327.64 15.07 4.94 4.94 Total: -1.00 -30.66 327.64 -9.78 -40.44 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.21 Total: 2.43 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -1.82 Total: -20.51 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.33 Total: -37.64 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.34 Total: -6.49 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.66 -9.78 -40.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124984152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.954 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds